CF418021

Overview
NameCF418021
Unique NameCF418021
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length668
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2264 contig Csv1_Contig2264:72..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBE2C_SPISO (Ubiquitin-conjugating enzyme E2 C OS=Spisula solidissima GN=UBE2C PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.190e-25
Identity = 53/121 (43.80%), Postives = 77/121 (63.64%), Query Frame = 1
Query:  154 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAS 516
            KRL ++ + L      GI+  P  +++  W A + GP DT ++   +KLTL+F  DYP KPP V+F +  +HPN+   G+ICLDIL+  W+  YDV  IL S+QSLL +PN  SP N++A+
Sbjct:   33 KRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAA 153          
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBC11_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC11 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.190e-25
Identity = 55/122 (45.08%), Postives = 78/122 (63.93%), Query Frame = 1
Query:  154 KRLMRDFKRLQQDPPAGISGAP-QDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAS 516
            KRL  +  +L       IS  P  DN +  W   I GP DTP+ G  FK++L+F ++YP  PP ++F+S M+HPN+   G+ICLDIL+ +WS +Y+V  IL S+QSLL +PN  SP N+ A+
Sbjct:   11 KRLQNELLQLLSSTTESISAFPVDDNDLTYWVGYITGPKDTPYSGLKFKVSLKFPQNYPFHPPMIKFLSPMWHPNVDKSGNICLDILKEKWSAVYNVETILLSLQSLLGEPNNRSPLNAVAA 132          
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UB2G2_PONAB (Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.473e-25
Identity = 59/141 (41.84%), Postives = 79/141 (56.03%), Query Frame = 1
Query:  136 MSTPARKRLMRDFKRLQQDPPAGISGAPQ-DNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAS 516
            M+  A KRLM ++K+L  +PP GI   P  + +   W A+I GP+DT ++ G F   L F  DYP  PP +RF   MFHPNIY DG +C+ IL               +WSP+  V  IL S+ S+L +PN  S AN +AS
Sbjct:    1 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDAS 141          
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UB2G2_MOUSE (Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus GN=Ube2g2 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.473e-25
Identity = 59/141 (41.84%), Postives = 79/141 (56.03%), Query Frame = 1
Query:  136 MSTPARKRLMRDFKRLQQDPPAGISGAPQ-DNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAS 516
            M+  A KRLM ++K+L  +PP GI   P  + +   W A+I GP+DT ++ G F   L F  DYP  PP +RF   MFHPNIY DG +C+ IL               +WSP+  V  IL S+ S+L +PN  S AN +AS
Sbjct:    1 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDAS 141          
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UB2G2_HUMAN (Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens GN=UBE2G2 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.473e-25
Identity = 59/141 (41.84%), Postives = 79/141 (56.03%), Query Frame = 1
Query:  136 MSTPARKRLMRDFKRLQQDPPAGISGAPQ-DNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAS 516
            M+  A KRLM ++K+L  +PP GI   P  + +   W A+I GP+DT ++ G F   L F  DYP  PP +RF   MFHPNIY DG +C+ IL               +WSP+  V  IL S+ S+L +PN  S AN +AS
Sbjct:    1 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDAS 141          
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UB2G2_BOVIN (Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus GN=UBE2G2 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.473e-25
Identity = 59/141 (41.84%), Postives = 79/141 (56.03%), Query Frame = 1
Query:  136 MSTPARKRLMRDFKRLQQDPPAGISGAPQ-DNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAS 516
            M+  A KRLM ++K+L  +PP GI   P  + +   W A+I GP+DT ++ G F   L F  DYP  PP +RF   MFHPNIY DG +C+ IL               +WSP+  V  IL S+ S+L +PN  S AN +AS
Sbjct:    1 MAGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDAS 141          
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBE2C_DROME (Ubiquitin-conjugating enzyme E2 C OS=Drosophila melanogaster GN=vih PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.335e-25
Identity = 54/121 (44.63%), Postives = 75/121 (61.98%), Query Frame = 1
Query:  154 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAS 516
            KRL ++   L      GIS  P   +I  W   I GP +T + G T++L+L F   YP   P V+F++  FHPN+   G+ICLDIL+++WS +YDV  IL SIQSLL +PN  SP N++A+
Sbjct:   35 KRLHKELMNLMMANERGISAFPDGENIFKWVGTIAGPRNTVYSGQTYRLSLDFPNSYPYAAPVVKFLTSCFHPNVDLQGAICLDILKDKWSALYDVRTILLSIQSLLGEPNNESPLNAQAA 155          
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBC7_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC7 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.219e-24
Identity = 55/140 (39.29%), Postives = 83/140 (59.29%), Query Frame = 1
Query:  136 MSTPARKRLMRDFKRLQQDPPAGISGAPQ-DNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEA 513
            MS  A+KRL+++ ++L +D P GI   P+ +N+I +W+ +I GP DTP+  G F   L+F +DYP  PP + F   + HPNIY +G +C+ IL             + +WSP+  V  IL S+ S+L +PN  S AN +A
Sbjct:    1 MSKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDA 140          
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBC11_SCHPO (Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosaccharomyces pombe GN=ubc11 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.219e-24
Identity = 54/122 (44.26%), Postives = 79/122 (64.75%), Query Frame = 1
Query:  154 KRLMRDFKRLQQDPPAGISGAPQ-DNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAS 516
            KRL  +   L      GIS  P  D++++ W   I GP DT ++G  FK+++ F  +YP  PPT+ F S M+HPN+   G+ICLDIL+++WS +Y+V  IL S+QSLL +PN  SP N++A+
Sbjct:   31 KRLRSELMSLMMSNTPGISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPYSPPTIIFTSPMWHPNVDMSGNICLDILKDKWSAVYNVQTILLSLQSLLGEPNNASPLNAQAA 152          
BLAST of CF418021 vs. ExPASy Swiss-Prot
Match: UBC7_ARATH (Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis thaliana GN=UBC7 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.633e-24
Identity = 56/143 (39.16%), Postives = 82/143 (57.34%), Query Frame = 1
Query:  136 MSTPARKRLMRDFKRLQQDPPAGIS-GAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEASAD 522
            M++ A   L +  K L + P  G S G   + +I  W+  I GP DT ++GG F   + F ++YPN PPTVRF S M+HPN+Y+DG +C+ IL               +W+P++ V +I+ SI S+L  PN  SPAN EA+ +
Sbjct:    1 MASQASLLLQKQLKDLCKHPVDGFSAGLVDEKNIFEWSVTIIGPPDTLYEGGFFNAIMTFPQNYPNSPPTVRFTSDMWHPNVYSDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKE 143          
The following BLAST results are available for this feature:
BLAST of CF418021 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
UBE2C_SPISO4.190e-2543.80Ubiquitin-conjugating enzyme E2 C OS=Spisula solid... [more]
UBC11_YEAST4.190e-2545.08Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UB2G2_PONAB5.473e-2541.84Ubiquitin-conjugating enzyme E2 G2 OS=Pongo abelii... [more]
UB2G2_MOUSE5.473e-2541.84Ubiquitin-conjugating enzyme E2 G2 OS=Mus musculus... [more]
UB2G2_HUMAN5.473e-2541.84Ubiquitin-conjugating enzyme E2 G2 OS=Homo sapiens... [more]
UB2G2_BOVIN5.473e-2541.84Ubiquitin-conjugating enzyme E2 G2 OS=Bos taurus G... [more]
UBE2C_DROME9.335e-2544.63Ubiquitin-conjugating enzyme E2 C OS=Drosophila me... [more]
UBC7_YEAST1.219e-2439.29Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UBC11_SCHPO1.219e-2444.26Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosa... [more]
UBC7_ARATH4.633e-2439.16Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-951 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-012_G02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF418021 ID=CF418021; Name=CF418021; organism=Citrus sinensis; type=EST; length=668bp
ATCAAATTGAGTACCATGGAATTCTTTCTCTGATACCGCCCGCTTTTCGA
TTGTTTCCCGAGAAAATCTCGCTGCGATTCTGAAGCTTTTACTGCAATCA
ACGCTACTTGCCGCGTCAGCTCGTAGGCAGTGAGAATGTCGACTCCTGCA
AGGAAGAGATTGATGAGGGATTTTAAGAGGTTACAACAAGATCCTCCGGC
TGGCATTAGTGGTGCTCCTCAGGACAACAGTATAATGCTTTGGAATGCTG
TTATATTCGGGCCGGATGATACCCCATGGGATGGAGGTACGTTTAAATTG
ACACTTCAGTTCACAGAGGATTATCCAAATAAGCCACCAACAGTGCGCTT
TGTTTCTCGAATGTTCCATCCAAATATTTATGCGGATGGAAGCATTTGCT
TGGACATTCTACAAAATCAGTGGAGTCCAATTTACGATGTAGCAGCAATA
CTCACGTCAATTCAGTCATTGCTTTGTGACCCAAATCCAAACTCTCCTGC
AAATTCGGAGGCCAGCGCGGATGTTTAGCGAGAACAAGCGTGAATACAAT
AGGAGAGTACGGGAAATTGTTGAGCAGAGTTGGACTGCTGACTAGTGGCA
ACTTGTTGGAATGTAGGGAACTTCAAAAGTAGTCCAATGGCTTGTTCTAA
ATAACATTTAAGATTCAA
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