CF418023

Overview
NameCF418023
Unique NameCF418023
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7541 contig Csv1_Contig7541:28..641. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF418023 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.927e-24
Identity = 53/74 (71.62%), Postives = 63/74 (85.14%), Query Frame = 1
Query:    1 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNF 222
            SG G+ +IG  L+NS +  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLA+ YL EAALG+AN DAI +GNF
Sbjct:  366 SGTGIEAIGDKLLNSFDGPPTFEQPKMTVEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTGNF 439          
BLAST of CF418023 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 6.698e-24
Identity = 50/73 (68.49%), Postives = 67/73 (91.78%), Query Frame = 1
Query:   10 GVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 228
            G+ +IGK LVNS++   TFEQP+MT+EKLLEYG+M+VQEQ+NVKRVQLAD Y+S+AALG+AN+DA+++G+FYG
Sbjct:  355 GIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 427          
BLAST of CF418023 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.492e-23
Identity = 53/74 (71.62%), Postives = 60/74 (81.08%), Query Frame = 1
Query:    7 VGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 228
            +GV  IGK LVNS+E  P FEQP MT EKL+EYGNM+V EQENVKRVQLA+ YLS+AALG+AN DAI  G FYG
Sbjct:  364 LGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYG 437          

HSP 2 Score: 71.633 bits (174), Expect = 3.448e-12
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = 2
Query:  365 GKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQY 472
            GK AQQ+N+PVPEGCTDP AENFDPTARSDDG+C Y
Sbjct:  437 GKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVY 472          
BLAST of CF418023 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.545e-23
Identity = 51/72 (70.83%), Postives = 62/72 (86.11%), Query Frame = 1
Query:    1 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSG 216
            SG G+  IG+ L+NS++  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLA+ YL EAALG+AN DAI +G
Sbjct:  361 SGTGIELIGEKLLNSRDGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTG 432          
BLAST of CF418023 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.332e-15
Identity = 38/50 (76.00%), Postives = 46/50 (92.00%), Query Frame = 1
Query:    4 GVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQL 153
            GVGV  IG++LVNSKE+ PTF+QP+MT+EKLLEYGNM+V EQENVKRV+L
Sbjct:  360 GVGVERIGRNLVNSKESPPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKL 409          
The following BLAST results are available for this feature:
BLAST of CF418023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RCA2_TOBAC3.927e-2471.62Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU6.698e-2468.49Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH1.492e-2371.62Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN2.545e-2370.83Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA3.332e-1576.00Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-953 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-012_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF418023 ID=CF418023; Name=CF418023; organism=Citrus sinensis; type=EST; length=613bp
TCTGGTGTTGGTGTTGGAAGCATTGGCAAGAGCCTTGTGAACTCAAAGGA
AGCAGCCCCAACATTCGAGCAACCAAGGATGACAATGGAGAAGCTGCTCG
AGTACGGAAACATGATTGTGCAAGAGCAAGAGAATGTGAAGAGAGTTCAG
TTGGCTGACAAGTATTTGAGTGAGGCCGCTCTTGGTGAAGCTAATGAAGA
TGCTATTCAGAGTGGAAATTTCTATGGTTAGCCCCCTTGATCCTAGCTAA
GAGGCCTTGATGGGAGGTTTGCTACTAGCATTCTACCAAATTTAGAGCAT
AAATTGAGATCAAATGAAGAATAACAAAGCATTTTTTTTTTTGGGGGTAA
ATTTTGCTGTTGCAGGCAAAGCAGCCCAGCAAATGAATGTTCCAGTTCCT
GAAGGATGTACTGATCCTACTGCAGAAAACTTTGATCCAACTGCAAGAAG
TGATGATGGAAGCTGCCAATACACGCTTTAGGCCTTGTTTCTAAGGGTTG
AGAAGTGTCGCACTTTGCTTAGGATGTGAGATATTCAAATAATATTGTTG
CATTTTCATTTCTTTTTTNATCAGAAAGAATCCTCTAATTTTGTGTTAAA
AAAAAAAAAAAAA
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