CF418028

Overview
NameCF418028
Unique NameCF418028
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF418028 vs. ExPASy Swiss-Prot
Match: BGAL1_ARATH (Beta-galactosidase 1 OS=Arabidopsis thaliana GN=BGAL1 PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 8.393e-47
Identity = 88/210 (41.90%), Postives = 121/210 (57.62%), Query Frame = 3
Query:   27 NEAEWTDLTRDGIPSTFTWYKTYFDAPDGIDPVALDLGSMGKGQAWVNGHHIGRYWTVVAPKGGCQDTCDYRGAYNSDKCTTNCGNPTQTWYHVPRSWLQASNNLLVIFEETGGNPFEISVKLRSTRIVCEQVSESHYPPVRKWSNSYSVDGKLSINK-MAPEMHLHCQDGYIISSIEFASYGTPQGRCQKFSRGNCHAPMSLSVVSEAC 653
            +  EW +          TWYKT F AP G  P+A+D+GSMGKGQ W+NG  +GR+W      G C + C Y G +  DKC  NCG  +Q WYHVPRSWL+ S NLLV+FEE GG+P  I++  R    VC  + E     V     +Y +     +NK + P+ HL C  G  I++++FAS+GTP+G C  + +G+CHA  S    ++ C
Sbjct:  610 SSVEWAEGAFVAQKQPLTWYKTTFSAPAGDSPLAVDMGSMGKGQIWINGQSLGRHWPAYKAVGSCSE-CSYTGTFREDKCLRNCGEASQRWYHVPRSWLKPSGNLLVVFEEWGGDPNGITLVRREVDSVCADIYEWQSTLV-----NYQLHASGKVNKPLHPKAHLQCGPGQKITTVKFASFGTPEGTCGSYRQGSCHAHHSYDAFNKLC 813          
BLAST of CF418028 vs. ExPASy Swiss-Prot
Match: BGA16_ARATH (Beta-galactosidase 16 OS=Arabidopsis thaliana GN=BGAL16 PE=2 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 4.932e-39
Identity = 93/209 (44.50%), Postives = 120/209 (57.42%), Query Frame = 3
Query:   54 RDGIPSTFTWYKTYFDAPDGIDPVALDLGSMGKGQAWVNGHHIGRYWTVVAPKGGCQDTCDYRGAYNSDKCTTNCGNPTQTWYHVPRSWLQASNNLLVIF-EETGGNPFEISVKLRSTRIVCEQVSESHYPPV----RKWSN----SYSVDGKLSINKMAPEMHLHCQDGYIISSIEFASYGTPQGRCQKFSRGNCHAPMSLSVVSEAC 653
            RD      TWYK  FD P+G DPVAL+LGSMGKG+AWVNG  IGRYW                 ++++ K     GNP+Q WYH+PRS+L+ ++NLLVI  EE  GNP  I++   S   VC  VS ++  PV    +K  N    +Y  D K       P++ L C  G  IS I FAS+GTP G C  +S G+CH+P SL+VV +AC
Sbjct:  601 RDSKSQPLTWYKASFDTPEGEDPVALNLGSMGKGEAWVNGQSIGRYWV----------------SFHTYK-----GNPSQIWYHIPRSFLKPNSNLLVILEEEREGNPLGITIDTVSVTEVCGHVSNTNPHPVISPRKKGLNRKNLTYRYDRK-------PKVQLQCPTGRKISKILFASFGTPNGSCGSYSIGSCHSPNSLAVVQKAC 781          
BLAST of CF418028 vs. ExPASy Swiss-Prot
Match: BGAL7_ARATH (Beta-galactosidase 7 OS=Arabidopsis thaliana GN=BGAL7 PE=2 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 2.706e-37
Identity = 79/181 (43.65%), Postives = 103/181 (56.91%), Query Frame = 3
Query:   78 TWYKTYFDAPDGIDPVALDLGSMGKGQAWVNGHHIGRYW-TVVAPKGGCQDTCDYRGAYNSDKCTTNCGNPTQTWYHVPRSWLQAS-NNLLVIFEETGGNPFEISVKLRSTRIVCEQVSESHYPPVRKWSNSYSVDGKLSINKMAPEMHLHCQDGYIISSIEFASYGTPQGRCQKFSRGNC 614
            TWYK  F AP G +PV +DL  +GKG+AW+NG  IGRYW +  +   GC+D CDYRGAY SDKC   CG PTQ WYHVPRS+L AS +N + +FEE GGNP  ++ K      VC +  E +                        ++ L C +   IS+++FAS+G P G C  F+ G C
Sbjct:  623 TWYKAKFKAPLGKEPVIVDLNGLGKGEAWINGQSIGRYWPSFNSSDDGCKDECDYRGAYGSDKCAFMCGKPTQRWYHVPRSFLNASGHNTITLFEEMGGNPSMVNFKTVVVGTVCARAHEHN------------------------KVELSCHN-RPISAVKFASFGNPLGHCGSFAVGTC 778          
BLAST of CF418028 vs. ExPASy Swiss-Prot
Match: BGAL7_ORYSJ (Beta-galactosidase 7 OS=Oryza sativa subsp. japonica GN=Os05g0428100 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.992e-36
Identity = 87/210 (41.43%), Postives = 111/210 (52.86%), Query Frame = 3
Query:   27 NEAEWTDLTRDGIPSTFTWYKTYFDAPDGIDPVALDLGSMGKGQAWVNGHHIGRYW-TVVAPKGGCQDTCDYRGAYNSDKCTTNCGNPTQTWYHVPRSWLQASNNLLVIFEETGGNPFEISVKLRSTRIVCEQVSESHYPPVRKWSNSYSVDGKLSINKMAPEMHLHCQDGYIISSIEFASYGTPQGRCQKFSRGNCHAPMSLSVVSEAC 653
            N   W D+  + I    TWYKT F  P G D V L+L SMGKG+ WVNG  IGRYW +  AP                       G P+Q+ YH+PR +L   +NLLV+ EE GG+P +I+V   S   VC  V E   PP++         GK+      P++ + CQ G  ISSIEFASYG P G C+ F  G+CHA  S SVV ++C
Sbjct:  568 NSVRWMDIN-NLIYHPLTWYKTTFSTPPGNDAVTLNLTSMGKGEVWVNGESIGRYWVSFKAPS----------------------GQPSQSLYHIPRGFLTPKDNLLVLVEEMGGDPLQITVNTMSVTTVCGNVDEFSVPPLQS-------RGKV------PKVRIWCQGGNRISSIEFASYGNPVGDCRSFRIGSCHAESSESVVKQSC 741          
BLAST of CF418028 vs. ExPASy Swiss-Prot
Match: BGAL_BRAOL (Beta-galactosidase OS=Brassica oleracea PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.137e-35
Identity = 78/195 (40.00%), Postives = 108/195 (55.38%), Query Frame = 3
Query:   78 TWYKTYFDAPDGIDPVALDLGSMGKGQAWVNGHHIGRYW-TVVAPKGGCQDTCDYRGAYNSDKCTTNCGNPTQTWYHVPRSWL-QASNNLLVIFEETGGNPFEISVKLRSTRIVCEQVSESHYPPVRKWSNSYSVDGKLSINKMAPEMHLHCQDGYIISSIEFASYGTPQGRCQKFSRGNCH-APMSLSVVSEAC 653
            +WYK  F AP G DPV +DL  +GKG+ W+NG  IGRYW +  +   GC + CDYRG Y SDKC   CG PTQ WYHVPRS+L    +N + +FEE GG+P  +  K   T  VC +  E +                        ++ L C +   IS+++FAS+G P G+C  F+ G+C  A  ++ VV++ C
Sbjct:  625 SWYKANFKAPLGKDPVIVDLNGLGKGEVWINGQSIGRYWPSFNSSDEGCTEECDYRGEYGSDKCAFMCGKPTQRWYHVPRSFLNDKGHNTITLFEEMGGDPSMVKFKTVVTGRVCAKAHEHN------------------------KVELSC-NNRPISAVKFASFGNPSGQCGSFAAGSCEGAKDAVKVVAKEC 794          
BLAST of CF418028 vs. ExPASy Swiss-Prot
Match: BGAL_DIACA (Putative beta-galactosidase OS=Dianthus caryophyllus GN=CARSR12 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.308e-35
Identity = 64/107 (59.81%), Postives = 77/107 (71.96%), Query Frame = 3
Query:   81 WYKTYFDAPDGIDPVALDLGSMGKGQAWVNGHHIGRYWTVVAPKGGCQDTCDYRGAYNSDKCTTNCGNPTQTWYHVPRSWLQASNNLLVIFEETGGNPFEISVKLRS 401
            WYKT FDAP G DP+ALDLGSMGKGQAW+NG  IGR+W+    KG C D C+Y G Y   KC ++CG  +Q WYHVPRSWLQ   NLLV+FEE GG+   +S+  R+
Sbjct:  623 WYKTTFDAPGGNDPLALDLGSMGKGQAWINGQSIGRHWSNNIAKGSCNDNCNYAGTYTETKCLSDCGKSSQKWYHVPRSWLQPRGNLLVVFEEWGGDTKWVSLVKRT 729          
BLAST of CF418028 vs. ExPASy Swiss-Prot
Match: BGA10_ARATH (Beta-galactosidase 10 OS=Arabidopsis thaliana GN=BGAL10 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.321e-35
Identity = 66/130 (50.77%), Postives = 80/130 (61.54%), Query Frame = 3
Query:   36 EWTDLTRDGIPSTFTWYKTYFDAPDGIDPVALDLGSMGKGQAWVNGHHIGRYWTVVA----PKGGCQDTCDYRGAYNSDKCTTNCGNPTQTWYHVPRSWLQASNNLLVIFEETGGNPFEISVKLRSTRIV 413
            +WT  T+       TWYK   + P G +PV LD+ SMGKG AW+NG  IGRYW  +A    P   C   CDYRG +  DKC T CG P+Q WYHVPRSW ++S N LVIFEE GGNP +I +  R   +V
Sbjct:  612 KWTVTTKPPKKQPLTWYKVVIEPPSGSEPVGLDMISMGKGMAWLNGEEIGRYWPRIARKNSPNDECVKECDYRGKFMPDKCLTGCGEPSQRWYHVPRSWFKSSGNELVIFEEKGGNPMKIKLSKRKVSVV 741          
BLAST of CF418028 vs. ExPASy Swiss-Prot
Match: BGAL5_ARATH (Beta-galactosidase 5 OS=Arabidopsis thaliana GN=BGAL5 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.643e-35
Identity = 67/108 (62.04%), Postives = 79/108 (73.15%), Query Frame = 3
Query:   78 TWYKTYFDAPDGIDPVALDLGSMGKGQAWVNGHHIGRYWTVVAPKGGCQDTCDYRGAYNSDKCTTNCGNPTQTWYHVPRSWLQASNNLLVIFEETGGNPFEISVKLRS 401
            TWYK YFDAP G +P+ALDL SMGKGQAW+NG  IGRYW   A KG C  +C+Y G Y  +KC + CG PTQ WYHVPRSWL+   NLLV+FEE GG+  ++SV  RS
Sbjct:  625 TWYKAYFDAPRGNEPLALDLKSMGKGQAWINGQSIGRYWMAFA-KGDC-GSCNYAGTYRQNKCQSGCGEPTQRWYHVPRSWLKPKGNLLVLFEELGGDISKVSVVKRS 730          
BLAST of CF418028 vs. ExPASy Swiss-Prot
Match: BGAL4_ORYSJ (Beta-galactosidase 4 OS=Oryza sativa subsp. japonica GN=Os02g0219200 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.643e-35
Identity = 65/109 (59.63%), Postives = 81/109 (74.31%), Query Frame = 3
Query:   78 TWYKTYFDAPDGIDPVALDLGSMGKGQAWVNGHHIGRYWTVVAPKGGCQDTCDYRGAYNSDKCTTNCGNPTQTWYHVPRSWLQASNNLLVIFEETGGNPFEISVKLRST 404
            TW+K +F+AP G DPVALD+GSMGKGQ WVNGHH+GRYW+  A  GGC   C Y G Y+ DKC +NCG+ +Q WYHVPRSWL+   NLLV+ EE GG+   +S+  R+T
Sbjct:  623 TWHKAFFNAPAGNDPVALDMGSMGKGQLWVNGHHVGRYWSYKA-SGGC-GGCSYAGTYHEDKCRSNCGDLSQRWYHVPRSWLKPGGNLLVVLEEYGGDLAGVSLATRTT 729          
BLAST of CF418028 vs. ExPASy Swiss-Prot
Match: BGAL4_ORYSI (Beta-galactosidase 4 OS=Oryza sativa subsp. indica GN=OsI_006270 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.643e-35
Identity = 65/109 (59.63%), Postives = 81/109 (74.31%), Query Frame = 3
Query:   78 TWYKTYFDAPDGIDPVALDLGSMGKGQAWVNGHHIGRYWTVVAPKGGCQDTCDYRGAYNSDKCTTNCGNPTQTWYHVPRSWLQASNNLLVIFEETGGNPFEISVKLRST 404
            TW+K +F+AP G DPVALD+GSMGKGQ WVNGHH+GRYW+  A  GGC   C Y G Y+ DKC +NCG+ +Q WYHVPRSWL+   NLLV+ EE GG+   +S+  R+T
Sbjct:  623 TWHKAFFNAPAGNDPVALDMGSMGKGQLWVNGHHVGRYWSYKA-SGGC-GGCSYAGTYHEDKCRSNCGDLSQRWYHVPRSWLKPGGNLLVVLEEYGGDLAGVSLATRTT 729          
The following BLAST results are available for this feature:
BLAST of CF418028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
BGAL1_ARATH8.393e-4741.90Beta-galactosidase 1 OS=Arabidopsis thaliana GN=BG... [more]
BGA16_ARATH4.932e-3944.50Beta-galactosidase 16 OS=Arabidopsis thaliana GN=B... [more]
BGAL7_ARATH2.706e-3743.65Beta-galactosidase 7 OS=Arabidopsis thaliana GN=BG... [more]
BGAL7_ORYSJ2.992e-3641.43Beta-galactosidase 7 OS=Oryza sativa subsp. japoni... [more]
BGAL_BRAOL1.137e-3540.00Beta-galactosidase OS=Brassica oleracea PE=2 SV=1[more]
BGAL_DIACA3.308e-3559.81Putative beta-galactosidase OS=Dianthus caryophyll... [more]
BGA10_ARATH4.321e-3550.77Beta-galactosidase 10 OS=Arabidopsis thaliana GN=B... [more]
BGAL5_ARATH5.643e-3562.04Beta-galactosidase 5 OS=Arabidopsis thaliana GN=BG... [more]
BGAL4_ORYSJ5.643e-3559.63Beta-galactosidase 4 OS=Oryza sativa subsp. japoni... [more]
BGAL4_ORYSI5.643e-3559.63Beta-galactosidase 4 OS=Oryza sativa subsp. indica... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-958 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-012_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF418028 ID=CF418028; Name=CF418028; organism=Citrus sinensis; type=EST; length=653bp
TCCAGCAGATATACGGTATAGAAGAAAATGAGGCAGAATGGACTGATTTG
ACACGTGATGGTATTCCATCCACCTTCACCTGGTACAAGACATATTTTGA
CGCTCCTGATGGGATAGACCCAGTGGCTCTCGATTTGGGAAGCATGGGAA
AGGGCCAGGCTTGGGTCAATGGCCACCATATAGGAAGATACTGGACTGTG
GTTGCCCCGAAAGGTGGATGTCAAGATACATGTGATTACCGTGGAGCCTA
CAATTCCGATAAGTGCACTACAAACTGTGGGAACCCTACTCAAACCTGGT
ACCATGTGCCACGGTCATGGTTGCAAGCATCAAATAATTTACTCGTCATC
TTTGAGGAAACAGGAGGCAATCCGTTTGAGATTTCAGTCAAGTTGCGTTC
AACTCGAATTGTCTGTGAACAAGTTTCAGAGTCCCACTACCCACCTGTTA
GGAAGTGGTCCAATTCATATTCTGTTGATGGAAAATTGTCGATAAATAAG
ATGGCACCAGAAATGCATTTGCATTGTCAAGATGGATATATTATCTCTTC
CATAGAATTTGCTAGCTATGGTACCCCTCAGGGTCGCTGCCAGAAATTTT
CAAGGGGCAACTGCCATGCGCCCATGTCATTATCCGTGGTGTCTGAGGCT
TGC
back to top