CF418028

Overview
NameCF418028
Unique NameCF418028
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF418028 vs. ExPASy Swiss-Prot
Match: BGAL_MALDO (Beta-galactosidase OS=Malus domestica PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.658e-34
Identity = 63/128 (49.22%), Postives = 81/128 (63.28%), Query Frame = 3
Query:   27 NEAEWTDLTRDGIPSTFTWYKTYFDAPDGIDPVALDLGSMGKGQAWVNGHHIGRYWTVVAPKGGCQDTCDYRGAYNSDKCTTNCGNPTQTWYHVPRSWLQASNNLLVIFEETGGNPFEISVKLRSTRI 410
            +  EW +          TWYK  F+AP G  P+ALD+GSMGKGQ W+NG  +GR+W     +G C D C Y G Y+  KC T+CG P+Q WYH+PRSWL  + NLLV+FEE GG+P  IS+  R T +
Sbjct:  600 SSVEWVEGPSMAEKQPLTWYKATFNAPPGDAPLALDMGSMGKGQIWINGQSVGRHWPGYIARGSCGD-CSYAGTYDDKKCRTHCGEPSQRWYHIPRSWLTPTGNLLVVFEEWGGDPSRISLVERGTAL 726          
BLAST of CF418028 vs. ExPASy Swiss-Prot
Match: BGAL2_ARATH (Beta-galactosidase 2 OS=Arabidopsis thaliana GN=BGAL2 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.658e-34
Identity = 62/110 (56.36%), Postives = 79/110 (71.82%), Query Frame = 3
Query:   78 TWYKTYFDAPDGIDPVALDLGSMGKGQAWVNGHHIGRYWTVVAPKGGCQDTCDYRGAYNSDKCTTNCGNPTQTWYHVPRSWLQASNNLLVIFEETGGNPFEISVKLRSTR 407
            TWYK+ FD P G +P+ALD+ +MGKGQ WVNGH+IGR+W     +G C   C+Y G YN  KC ++CG P+Q WYHVPRSWL+   NLLVIFEE GG+P  IS+  R+ +
Sbjct:  619 TWYKSSFDTPRGNEPLALDMNTMGKGQVWVNGHNIGRHWPAYTARGNC-GRCNYAGIYNEKKCLSHCGEPSQRWYHVPRSWLKPFGNLLVIFEEWGGDPSGISLVKRTAK 727          
BLAST of CF418028 vs. ExPASy Swiss-Prot
Match: BGAL9_ORYSJ (Beta-galactosidase 9 OS=Oryza sativa subsp. japonica GN=Os06g0573600 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.627e-32
Identity = 63/109 (57.80%), Postives = 77/109 (70.64%), Query Frame = 3
Query:   78 TWYKTYFDAPDGIDPVALDLGSMGKGQAWVNGHHIGRYWTVVAPKGGCQDTCDYRGAYNSDKCTTNCGNPTQTWYHVPRSWLQASNNLLVIFEETGGNPFEISVKLRST 404
            TW++ YF+AP G  PVALDLGSMGKGQAWVNGH IGRYW+  A  G C   C Y G Y+  KC  NCG+ +Q WYHVPRSWL  S NL+V+ EE GG+   +++  R+T
Sbjct:  609 TWHRAYFNAPAGGAPVALDLGSMGKGQAWVNGHLIGRYWSYKA-SGNC-GGCSYAGTYSEKKCQANCGDASQRWYHVPRSWLNPSGNLVVLLEEFGGDLSGVTLMTRTT 715          
BLAST of CF418028 vs. ExPASy Swiss-Prot
Match: BGA12_ARATH (Beta-galactosidase 12 OS=Arabidopsis thaliana GN=BGAL12 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.627e-32
Identity = 57/124 (45.97%), Postives = 81/124 (65.32%), Query Frame = 3
Query:   36 EWTDLTRDGIPSTFTWYKTYFDAPDGIDPVALDLGSMGKGQAWVNGHHIGRYWTVVAPKGGCQDTCDYRGAYNSDKCTTNCGNPTQTWYHVPRSWLQASNNLLVIFEETGGNPFEISVKLRSTR 407
            EW + +        TWYK+ FD+P G +P+ALD+ +MGKGQ W+NG +IGR+W     +G C+  C Y G +   KC +NCG  +Q WYHVPRSWL+ +NNL+++ EE GG P  IS+  R+ +
Sbjct:  606 EWKEGSLVAKKQPLTWYKSTFDSPTGNEPLALDMNTMGKGQMWINGQNIGRHWPAYTARGKCE-RCSYAGTFTEKKCLSNCGEASQRWYHVPRSWLKPTNNLVIVLEEWGGEPNGISLVKRTAK 728          
BLAST of CF418028 vs. ExPASy Swiss-Prot
Match: BGAL1_ORYSJ (Beta-galactosidase 1 OS=Oryza sativa subsp. japonica GN=Os01g0533400 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.438e-30
Identity = 72/200 (36.00%), Postives = 105/200 (52.50%), Query Frame = 3
Query:   75 FTWYKTYFDAPDGIDPVALDLGSMGKGQAWVNGHHIGRYWT--VVAPKGGCQDTCDYRGAYNSD----KCTTNCGNPTQTWYHVPRSWLQASN-NLLVIFEETGGNPFEISVKLRSTRIVCEQVSESHYPPVRKWSNSYSVDGKLSINKMAPEMHLHCQDGYIISSIEFASYGTPQGRCQKFSRGNCHAPMSLSVVSEAC 653
            FTWYK  F+AP G D V +DL  + KG AWVNG+++GRYW     A   GC   CDYRGA+ ++    +C T CG P+Q +YHVPRS+L A   N L++FEE GG+P  ++++      VC                        +  +    + L C  G+ +SS++ AS+G  +GRC  +  G C +  +    + AC
Sbjct:  624 FTWYKATFEAPSGEDAVVVDLLGLNKGVAWVNGNNLGRYWPSYTAAEMAGCH-RCDYRGAFQAEGDGTRCLTGCGEPSQRYYHVPRSFLAAGEPNTLLLFEEAGGDPSGVALRTVVPGAVC------------------------TSGEAGDAVTLSCGGGHAVSSVDVASFGVGRGRCGGY-EGGCESKAAYEAFTAAC 797          
BLAST of CF418028 vs. ExPASy Swiss-Prot
Match: BGA12_ORYSJ (Beta-galactosidase 12 OS=Oryza sativa subsp. japonica GN=Os09g0539200 PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 1.879e-30
Identity = 70/195 (35.90%), Postives = 100/195 (51.28%), Query Frame = 3
Query:   78 TWYKTYFDAPDGIDPVALDLGSMGKGQAWVNGHHIGRYWTVVAPKGGCQDTCDYRGAYNSDKCTTNCGNPTQTWYHVPRSWLQASNNLLVIFEETGGNPFEISVKLRSTRIVCEQVSESHYPPVRKWSNSYSVDG---KLSINKMAPEMHLHCQDGYIISSIEFASYGTPQGRCQKFSRGNCHAPMSLSVVSEAC 653
            TWYK YFD PDG DP+ +D+ SM KG  +VNG  IGRYWT                        T  G+P+Q+ YH+PR++L+   NLL+IFEE  G P  I ++      +C  +SE +   ++ W +    DG   KL     +    L+C     I  + FAS+G P+G C  F+ G CH P + ++V + C
Sbjct:  627 TWYKRYFDEPDGDDPIVVDMSSMSKGMIYVNGEGIGRYWT---------------------SFITLAGHPSQSVYHIPRAFLKPKGNLLIIFEEELGKPGGILIQTVRRDDICVFISEHNPAQIKTWES----DGGQIKLIAEDTSTRGTLNCPPKRTIQEVVFASFGNPEGACGNFTAGTCHTPDAKAIVEKEC 796          
BLAST of CF418028 vs. ExPASy Swiss-Prot
Match: BGAL4_ARATH (Beta-galactosidase 4 OS=Arabidopsis thaliana GN=BGAL4 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.453e-30
Identity = 59/127 (46.46%), Postives = 82/127 (64.57%), Query Frame = 3
Query:   21 EENEAEWTDLTRDGIPSTFTWYKTYFDAPDGIDPVALDLGSMGKGQAWVNGHHIGRYWTVVAPKGGCQDTCDYRGAYNSDKCTTNCGNPTQTWYHVPRSWLQASNNLLVIFEETGGNPFEISVKLRS 401
            E +   WT  +        TWYK+ F  P G +P+ALD+ +MGKGQ W+NG +IGR+W     +G C   C+Y G +++ KC +NCG  +Q WYHVPRSWL+ S NL+V+FEE GG+P  IS+  R+
Sbjct:  600 ESSGVRWTQGSFVAKKQPLTWYKSTFATPAGNEPLALDMNTMGKGQVWINGRNIGRHWPAYKAQGSC-GRCNYAGTFDAKKCLSNCGEASQRWYHVPRSWLK-SQNLIVVFEELGGDPNGISLVKRT 724          
BLAST of CF418028 vs. ExPASy Swiss-Prot
Match: BGA14_ORYSJ (Beta-galactosidase 14 OS=Oryza sativa subsp. japonica GN=Os10g0340600 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.453e-30
Identity = 76/201 (37.81%), Postives = 104/201 (51.74%), Query Frame = 3
Query:   75 FTWYKTYFDAPDGIDPVALDLGSMGKGQAWVNGHHIGRYWT--VVAPKGGCQDTCDYRGAYNSD----KCTTNCGNPTQTWYHVPRSWL-QASNNLLVIFEETGGNPFEISVKLRSTRIVCEQVSESHYPPVRKWSNSYSVDGKLSINKMAPEMHLHC-QDGYIISSIEFASYGTPQGRCQKFSRGNCHAPMSLSVVSEAC 653
            FTWYKT F AP G D V +DL  + KG AWVNG+ +GRYW   V A   GC   CDYRG + ++    KC T CG P+Q  YHVPRS+L +   N L++FEE GG+P E++V+      VC                           ++   + L C   G  ISS++ AS+G  +GRC  +  G C + ++    + AC
Sbjct:  604 FTWYKTTFQAPAGEDSVVVDLHGLNKGVAWVNGNSLGRYWPSYVAADMPGCHH-CDYRGVFKAEVEAQKCLTGCGEPSQQLYHVPRSFLNKGEPNTLILFEEAGGDPSEVAVRTVVEGSVCASA------------------------EVGDTVTLSCGAHGRTISSVDVASFGVARGRCGSYD-GGCESKVAYDAFAAAC 778          
BLAST of CF418028 vs. ExPASy Swiss-Prot
Match: BGA10_ORYSJ (Putative beta-galactosidase 10 OS=Oryza sativa subsp. japonica GN=Os06g0628500 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.323e-30
Identity = 74/205 (36.10%), Postives = 105/205 (51.22%), Query Frame = 3
Query:   63 IPSTFTWYKTYFDAPDGIDPVALDLGSMGKGQAWVNGHHIGRYWT--VVAPKGGCQDTCDYRGAYNSD----KCTTNCGNPTQTWYHVPRSWLQ-ASNNLLVIFEETGGNPFEISVKLRSTRIVCEQVSESHYPPVRKWSNSYSVDGKLSINKMAPEMHLHC-QDGYIISSIEFASYGTPQGRCQKFSRGNCHAPMSLSVVSEAC 653
            I   FTWYKT F AP G D V +DL  + KG AWVNG+++GRYW     A  GGC   CDYRG + ++    KC T CG P+Q +YHVPRS+L+    N +++FEE GG+P  +S +  +   VC                           ++   + L C Q    IS+I   S+G  +G+C  + +G C +  +    +EAC
Sbjct:  601 INKPFTWYKTTFQAPAGEDTVVVDLLGLNKGVAWVNGNNLGRYWPSYTAAEMGGCHH-CDYRGVFQAEGDGQKCLTGCGEPSQRFYHVPRSFLKNGEPNTVILFEEAGGDPSHVSFRTVAAGSVCASA------------------------EVGDTITLSCGQHSKTISAINVTSFGVARGQCGAY-KGGCESKAAYKAFTEAC 779          
BLAST of CF418028 vs. ExPASy Swiss-Prot
Match: BGA13_ARATH (Beta-galactosidase 13 OS=Arabidopsis thaliana GN=BGAL13 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.077e-29
Identity = 72/198 (36.36%), Postives = 101/198 (51.01%), Query Frame = 3
Query:   78 TWYKTYFDAPDGIDPVALDLGSMGKGQAWVNGHHIGRYW-TVVAPKGGCQDTCDYRGAYNSDKCTTNCGNPTQTWYHVPRSWLQASNNLLVIFEETGG-NPFEISVKLRSTRIVCEQVSESHYPPVRKWSNSYSVDGKLSINKMAPEMH----LHCQDGYIISSIEFASYGTPQGRCQKFSRGNCHAPMSLSVVSEAC 653
            TWY+TYFDAP+     A+ +  MGKG  WVNG  +GRYW + ++P                       G PTQ  YH+PRS+L+   NLLVIFEE     P  I   + +   VC  + E++ P VR W+          +  +  ++H    L C     IS++EFAS+G P G C  F+ G+C+AP+S  VV + C
Sbjct:  636 TWYQTYFDAPESQSAAAIRMNGMGKGLIWVNGEGVGRYWMSFLSP----------------------LGQPTQIEYHIPRSFLKPKKNLLVIFEEEPNVKPELIDFVIVNRDTVCSYIGENYTPSVRHWTRKND-----QVQAITDDVHLTANLKCSGTKKISAVEFASFGNPNGTCGNFTLGSCNAPVSKKVVEKYC 806          
The following BLAST results are available for this feature:
BLAST of CF418028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
BGAL_MALDO3.658e-3449.22Beta-galactosidase OS=Malus domestica PE=1 SV=1[more]
BGAL2_ARATH3.658e-3456.36Beta-galactosidase 2 OS=Arabidopsis thaliana GN=BG... [more]
BGAL9_ORYSJ7.627e-3257.80Beta-galactosidase 9 OS=Oryza sativa subsp. japoni... [more]
BGA12_ARATH7.627e-3245.97Beta-galactosidase 12 OS=Arabidopsis thaliana GN=B... [more]
BGAL1_ORYSJ1.438e-3036.00Beta-galactosidase 1 OS=Oryza sativa subsp. japoni... [more]
BGA12_ORYSJ1.879e-3035.90Beta-galactosidase 12 OS=Oryza sativa subsp. japon... [more]
BGAL4_ARATH2.453e-3046.46Beta-galactosidase 4 OS=Arabidopsis thaliana GN=BG... [more]
BGA14_ORYSJ2.453e-3037.81Beta-galactosidase 14 OS=Oryza sativa subsp. japon... [more]
BGA10_ORYSJ9.323e-3036.10Putative beta-galactosidase 10 OS=Oryza sativa sub... [more]
BGA13_ARATH2.077e-2936.36Beta-galactosidase 13 OS=Arabidopsis thaliana GN=B... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-958 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-012_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF418028 ID=CF418028; Name=CF418028; organism=Citrus sinensis; type=EST; length=653bp
TCCAGCAGATATACGGTATAGAAGAAAATGAGGCAGAATGGACTGATTTG
ACACGTGATGGTATTCCATCCACCTTCACCTGGTACAAGACATATTTTGA
CGCTCCTGATGGGATAGACCCAGTGGCTCTCGATTTGGGAAGCATGGGAA
AGGGCCAGGCTTGGGTCAATGGCCACCATATAGGAAGATACTGGACTGTG
GTTGCCCCGAAAGGTGGATGTCAAGATACATGTGATTACCGTGGAGCCTA
CAATTCCGATAAGTGCACTACAAACTGTGGGAACCCTACTCAAACCTGGT
ACCATGTGCCACGGTCATGGTTGCAAGCATCAAATAATTTACTCGTCATC
TTTGAGGAAACAGGAGGCAATCCGTTTGAGATTTCAGTCAAGTTGCGTTC
AACTCGAATTGTCTGTGAACAAGTTTCAGAGTCCCACTACCCACCTGTTA
GGAAGTGGTCCAATTCATATTCTGTTGATGGAAAATTGTCGATAAATAAG
ATGGCACCAGAAATGCATTTGCATTGTCAAGATGGATATATTATCTCTTC
CATAGAATTTGCTAGCTATGGTACCCCTCAGGGTCGCTGCCAGAAATTTT
CAAGGGGCAACTGCCATGCGCCCATGTCATTATCCGTGGTGTCTGAGGCT
TGC
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