CF418028

Overview
NameCF418028
Unique NameCF418028
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF418028 vs. ExPASy Swiss-Prot
Match: BGA13_ORYSJ (Beta-galactosidase 13 OS=Oryza sativa subsp. japonica GN=Os10g0330600 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.031e-28
Identity = 73/201 (36.32%), Postives = 102/201 (50.75%), Query Frame = 3
Query:   75 FTWYKTYFDAPDGIDPVALDLGSMGKGQAWVNGHHIGRYWT--VVAPKGGCQDTCDYRGAYNSD----KCTTNCGNPTQTWYHVPRSWLQASN-NLLVIFEETGGNPFEISVKLRSTRIVCEQVSESHYPPVRKWSNSYSVDGKLSINKMAPEMHLHC-QDGYIISSIEFASYGTPQGRCQKFSRGNCHAPMSLSVVSEAC 653
            FTWYKT F AP G D V +DL  + KG AWVNG+++GRYW     A  GGC   CDYRG + ++    KC T CG P+Q +YHVPRS+L+    N L++FEE GG+P ++         VC                           ++   + L C Q    IS+I+  S+G  +G+C  +  G C +  +    +EAC
Sbjct:  624 FTWYKTTFQAPAGQDTVVVDLLGLNKGVAWVNGNNLGRYWPSYTAAEMGGCHH-CDYRGVFQAEGDGQKCLTGCGEPSQRYYHVPRSFLKNGEPNTLILFEEAGGDPSQVIFHSVVAGSVCVSA------------------------EVGDAITLSCGQHSKTISTIDVTSFGVARGQCGAY-EGGCESKAAYKAFTEAC 798          
BLAST of CF418028 vs. ExPASy Swiss-Prot
Match: BGA11_ARATH (Beta-galactosidase 11 OS=Arabidopsis thaliana GN=BGAL11 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.031e-28
Identity = 72/209 (34.45%), Postives = 102/209 (48.80%), Query Frame = 3
Query:   30 EAEWTDLTRDGIPSTFTWYKTYFDAPDGIDPVALDLGSMGKGQAWVNGHHIGRYWTVVAPKGGCQDTCDYRGAYNSDKCTTNCGNPTQTWYHVPRSWLQASNNLLVIFEETGG-NPFEISVKLRSTRIVCEQVSESHYPPVRKWSNSYSVDGKLSINKMAPEMHLHCQDGYIISSIEFASYGTPQGRCQKFSRGNCHAPMSLSVVSEAC 653
            + EW   T  G     TWY+TYFDAP+ +    + +  MGKG  WVNG  +GRYW                         +  G PTQ  YH+PRS+L+   NLLVIFEE     P  +   + +   VC  V E++ P VR W+        ++ N ++    L C     I+++EFAS+G P G C  F+ G C+AP+S  V+ + C
Sbjct:  619 KVEWKKFT--GKAPGLTWYQTYFDAPESVSAATIRMHGMGKGLIWVNGEGVGRYW---------------------QSFLSPLGQPTQIEYHIPRSFLKPKKNLLVIFEEEPNVKPELMDFAIVNRDTVCSYVGENYTPSVRHWTRKKDQVQAITDN-VSLTATLKCSGTKKIAAVEFASFGNPIGVCGNFTLGTCNAPVSKQVIEKHC 803          
BLAST of CF418028 vs. ExPASy Swiss-Prot
Match: BGA11_ORYSJ (Beta-galactosidase 11 OS=Oryza sativa subsp. japonica GN=Os08g0549200 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.646e-26
Identity = 72/198 (36.36%), Postives = 92/198 (46.46%), Query Frame = 3
Query:   78 TWYKTYFDAPDGIDPVALDLGSMGKGQAWVNGHHIGRYWTVVAPKGGCQDTCDYRGAYNSDKCTTNCGNPTQTWYHVPRSWLQASNNLLVIFEETGGNPFEISVKLRSTRIVCEQVSESHYPPVR-KWSNSYS-----VDGKLSINKMAPEMHLHCQDGYIISSIEFASYGTPQGRCQKFSRGNCHAPMSLSVVSEAC 653
            TWY+  FD P G DPV +DL  MGKG  +VNG  +GRYW              Y  A          G P+Q  YHVPRS L+   N L+ FEE GG P  I +       +C  ++E +   VR  W +  S              + P   L C     I S+ FASYG P G C  ++ G+CHAP +  VV +AC
Sbjct:  626 TWYRRRFDPPSGTDPVVIDLTPMGKGFLFVNGEGLGRYWV------------SYHHA---------LGKPSQYLYHVPRSLLRPKGNTLMFFEEEGGKPDAIMILTVKRDNICTFMTEKNPAHVRWSWESKDSQPKAVAGAGAGAGGLKPTAVLSCPTKKTIQSVVFASYGNPLGICGNYTVGSCHAPRTKEVVEKAC 802          
BLAST of CF418028 vs. ExPASy Swiss-Prot
Match: BGA14_ARATH (Beta-galactosidase 14 OS=Arabidopsis thaliana GN=BGAL14 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.820e-25
Identity = 69/207 (33.33%), Postives = 102/207 (49.28%), Query Frame = 3
Query:   54 RDGIPSTFTWYKTYFDAPDGIDPVALDLGSMGKGQAWVNGHHIGRYW-TVVAPKGGCQDTCDYRGAYNSDKCTTNCGNPTQTWYHVPRSWL--QASNNLLVIFEETGGNPFE-ISVKLRSTRIVCEQVSESHYPPVRKWSNSYSVDGKLSINK---MAPEMHLHCQDGYIISSIEFASYGTPQGRCQKFSRGNCHAPMSLSVVSEAC 653
            +DG     TWYKTYF+ P+G++ VA+ + +MGKG  WVNG  +GRYW + ++P                       G PTQT YH+PRS++  +   N+LVI EE  G   E I   L +   +C  V E +   V+ W      +G   +++   M  +  + C     +  ++FAS+G P G C  F+ G C A  S  VV + C
Sbjct:  624 KDGKRKPLTWYKTYFETPEGVNAVAIRMKAMGKGLIWVNGIGVGRYWMSFLSP----------------------LGEPTQTEYHIPRSFMKGEKKKNMLVILEEEPGVKLESIDFVLVNRDTICSNVGEDYPVSVKSWKR----EGPKIVSRSKDMRLKAVMRCPPEKQMVEVQFASFGDPTGTCGNFTMGKCSASKSKEVVEKEC 804          
BLAST of CF418028 vs. ExPASy Swiss-Prot
Match: BGAL6_ARATH (Beta-galactosidase 6 OS=Arabidopsis thaliana GN=BGAL6 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.746e-20
Identity = 53/140 (37.86%), Postives = 74/140 (52.86%), Query Frame = 3
Query:   27 NEAEWTDLTRDGIPST--FTWYKTYFDAPDGIDPVALDLGSMGKGQAWVNGHHIGRYWTVVAPKGGCQDTCDYRGAYNSDKCTTNCGNPTQTWYHVPRSWLQASNNLLVIFEETGGNPFEISVKLRSTRIVCEQVSESHY 440
            N  +W+ + + G+       WYKT FD P+G  PV L + SMGKG+ WVNG  IGRYW                         T  G P+Q+ YH+PR++L+ S NLLV+FEE GG+P  IS  L +  +V    ++S +
Sbjct:  602 NRVKWS-MNKAGLIKNRPLAWYKTTFDGPNGDGPVGLHMSSMGKGEIWVNGESIGRYWV---------------------SFLTPAGQPSQSIYHIPRAFLKPSGNLLVVFEEEGGDPLGIS--LNTISVVGSSQAQSQF 717          
BLAST of CF418028 vs. ExPASy Swiss-Prot
Match: BGA15_ARATH (Beta-galactosidase 15 OS=Arabidopsis thaliana GN=BGAL15 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.799e-18
Identity = 59/183 (32.24%), Postives = 85/183 (46.45%), Query Frame = 3
Query:   96 FDAPDGIDPVALDLGSMGKGQAWVNGHHIGRYWTVVAPKGGCQDTCDYRGAYNSDKCTTNCGNPTQTWYHVPRSWLQA-SNNLLVIFEETGGNPFEISVKLRSTRIVCEQVSESHYPPVRKWSNSYSVDGKLSINKMAPEMHLHCQDGYIISSIEFASYGTPQGRCQKFSRGNCHAPMSLSVV 641
            + AP G +PV +DL  +GKG AW+NG++IGRYW                   + D C+          YHVPRS+L +  +N LV+FEE GGNP  ++ +      VC  V E +                         + L C +G  IS+I+FAS+G P G C  F +G C A  + + +
Sbjct:  606 WSAPLGSEPVVVDLLGLGKGTAWINGNNIGRYWPAFLS--------------DIDGCSAE--------YHVPRSFLNSEGDNTLVLFEEIGGNPSLVNFQTIGVGSVCANVYEKNV------------------------LELSC-NGKPISAIKFASFGNPGGDCGSFEKGTCEASNNAAAI 741          
BLAST of CF418028 vs. ExPASy Swiss-Prot
Match: BGAL2_DICDI (Probable beta-galactosidase 2 OS=Dictyostelium discoideum GN=glb2 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.367e-14
Identity = 48/131 (36.64%), Postives = 64/131 (48.85%), Query Frame = 3
Query:   63 IPSTFTWYK---TYFDAPDGIDPV--ALDLGSMGKGQAWVNGHHIGRYWTVVAPKGGCQDTC----DYRGAYNSDKCTTNCGNPTQTWYHVPRSWLQASN-----NLLVIFEETGGNPFEISVKLRSTRIV 413
            I    TWYK   +    P  I     ALD+ SM KG  WVNG+ IGRYW + A +  C  +      Y G Y+      +C  P+Q+ Y VP  WL  +N       ++I EE  GNP EI  +L S +I+
Sbjct:  632 IQKPLTWYKLNISLVGLPIDISSTVYALDMSSMNKGMIWVNGYSIGRYWLIEATQSICNQSAIENYSYIGEYDPSNYRIDCNKPSQSIYSVPIDWLFNNNYNNQYATIIIIEELNGNPNEI--QLLSNKII 760          
The following BLAST results are available for this feature:
BLAST of CF418028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
BGA13_ORYSJ1.031e-2836.32Beta-galactosidase 13 OS=Oryza sativa subsp. japon... [more]
BGA11_ARATH1.031e-2834.45Beta-galactosidase 11 OS=Arabidopsis thaliana GN=B... [more]
BGA11_ORYSJ1.646e-2636.36Beta-galactosidase 11 OS=Oryza sativa subsp. japon... [more]
BGA14_ARATH1.820e-2533.33Beta-galactosidase 14 OS=Arabidopsis thaliana GN=B... [more]
BGAL6_ARATH8.746e-2037.86Beta-galactosidase 6 OS=Arabidopsis thaliana GN=BG... [more]
BGA15_ARATH4.799e-1832.24Beta-galactosidase 15 OS=Arabidopsis thaliana GN=B... [more]
BGAL2_DICDI9.367e-1436.64Probable beta-galactosidase 2 OS=Dictyostelium dis... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-958 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-012_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF418028 ID=CF418028; Name=CF418028; organism=Citrus sinensis; type=EST; length=653bp
TCCAGCAGATATACGGTATAGAAGAAAATGAGGCAGAATGGACTGATTTG
ACACGTGATGGTATTCCATCCACCTTCACCTGGTACAAGACATATTTTGA
CGCTCCTGATGGGATAGACCCAGTGGCTCTCGATTTGGGAAGCATGGGAA
AGGGCCAGGCTTGGGTCAATGGCCACCATATAGGAAGATACTGGACTGTG
GTTGCCCCGAAAGGTGGATGTCAAGATACATGTGATTACCGTGGAGCCTA
CAATTCCGATAAGTGCACTACAAACTGTGGGAACCCTACTCAAACCTGGT
ACCATGTGCCACGGTCATGGTTGCAAGCATCAAATAATTTACTCGTCATC
TTTGAGGAAACAGGAGGCAATCCGTTTGAGATTTCAGTCAAGTTGCGTTC
AACTCGAATTGTCTGTGAACAAGTTTCAGAGTCCCACTACCCACCTGTTA
GGAAGTGGTCCAATTCATATTCTGTTGATGGAAAATTGTCGATAAATAAG
ATGGCACCAGAAATGCATTTGCATTGTCAAGATGGATATATTATCTCTTC
CATAGAATTTGCTAGCTATGGTACCCCTCAGGGTCGCTGCCAGAAATTTT
CAAGGGGCAACTGCCATGCGCCCATGTCATTATCCGTGGTGTCTGAGGCT
TGC
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