CF418034

Overview
NameCF418034
Unique NameCF418034
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11256 contig Csv1_Contig11256:225..908. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.964e-26
Identity = 75/203 (36.95%), Postives = 104/203 (51.23%), Query Frame = 3
Query:   21 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFA----------------SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTD----EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 566
            +P+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+ +K G+      W+ AG A+ F+                S   ++ ++ +L  +VE  R         V   P+ +       +  YPGG F+PL  A       E K KEL NGRLAM +  GF VQ  VTGKGP ENL  H++DP  N
Sbjct:   63 TPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR---------VGGGPLGEGL-----DKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVAN 250          
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.964e-26
Identity = 75/203 (36.95%), Postives = 104/203 (51.23%), Query Frame = 3
Query:   21 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFA----------------SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTD----EAKEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 566
            +P+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+ +K G+      W+ AG A+ F+                S   ++ ++ +L  +VE  R         V   P+ +       +  YPGG F+PL  A       E K KEL NGRLAM +  GF VQ  VTGKGP ENL  H++DP  N
Sbjct:   63 TPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAG-AQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYR---------VGGGPLGEGL-----DKVYPGGAFDPLGLADDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVAN 250          
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.177e-26
Identity = 75/192 (39.06%), Postives = 104/192 (54.17%), Query Frame = 3
Query:   21 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEV---GYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 566
            +P+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+F + G+      W+ AG ++ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:   66 APSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGPLGEVIDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 253          
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.177e-26
Identity = 73/194 (37.63%), Postives = 101/194 (52.06%), Query Frame = 3
Query:   21 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQDIKNPGSVNQDPIFKQYSLPPNEVG------YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 566
            +P+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+ +K G+      W+ AG ++ F+     ++    L H   I   W        V    + + Y +    +G      YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP  N
Sbjct:   65 TPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPNLIHAQSILAVW-----ASQVVLMGLIEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVAN 252          
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 5.177e-26
Identity = 73/201 (36.32%), Postives = 102/201 (50.75%), Query Frame = 3
Query:   24 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGK-------AEYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 566
            P+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+  + G+      W+ AG         +Y  + S         ++ ++ +L   VE   ++    P     DP+            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVE--GYRIAGGPLGEVVDPL------------YPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 252          
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.761e-26
Identity = 75/192 (39.06%), Postives = 103/192 (53.65%), Query Frame = 3
Query:   21 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 566
            SP+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+  + G+      W+ AG ++ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:   66 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGEPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVNN 253          
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 6.761e-26
Identity = 73/201 (36.32%), Postives = 102/201 (50.75%), Query Frame = 3
Query:   24 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGK-------AEYFASSS--------TLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 566
            P+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+  + G+      W+ AG         +Y  + S         ++ ++ +L   VE   ++    P     DP+            YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:   62 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVE--GYRIAGGPLGEVVDPL------------YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 248          
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.761e-26
Identity = 67/193 (34.72%), Postives = 99/193 (51.30%), Query Frame = 3
Query:   24 PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGK-------AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 566
            P+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+  + G+      W+ AG         +Y  + S +     +     ++     ++      + P+ +       ++ YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:   66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGEGPLGE-----AEDLLYPGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 253          
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.761e-26
Identity = 75/195 (38.46%), Postives = 104/195 (53.33%), Query Frame = 3
Query:   21 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-W-QDIKNPGSVNQDPIFKQYSLPPNEVG------YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 566
            SP+YL G  PGD G+D  GL+ DPE      + E+++SRWAMLG +G + PE+ ++ G+      W+ AG ++ F+     ++    L H   I   W   +   G+V      + Y +    +G      YPGG F+PL  A   EA    K KEL NGRLAM +  GF V   VTGKGP ENL  H++DP +N
Sbjct:   28 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAV------EGYRIAGGPLGEVVDPLYPGGSFDPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVNN 215          
BLAST of CF418034 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.831e-26
Identity = 75/192 (39.06%), Postives = 103/192 (53.65%), Query Frame = 3
Query:   21 SPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGI-INVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRR-WQ-DIKNPGSVNQDPIFKQYSLPPNEVG---YPGGIFNPLNFAPTDEA----KEKELANGRLAMLAFLGFIVQHNVTGKGPFENLLQHISDPWHN 566
            SP+YL G  PGD G+D  GL+ DPE      + E+++ RWAMLG +G + PE+  + G+      W+ AG ++ F+     ++    L H   I   W   +   G+V     ++    P  EV    YPGG F+PL  A   EA    K KE+ NGRLAM +  GF VQ  VTGKGP ENL  H++DP +N
Sbjct:   67 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG-SQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEG---YRVAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 254          
The following BLAST results are available for this feature:
BLAST of CF418034 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
CB23_ORYSJ3.964e-2636.95Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI3.964e-2636.95Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_PETSP5.177e-2639.06Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB23_TOBAC5.177e-2637.63Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB21_ORYSJ5.177e-2636.32Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB25_NICPL6.761e-2639.06Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB22_ORYSJ6.761e-2636.32Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_SINAL6.761e-2634.72Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_PEA6.761e-2638.46Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB24_TOBAC8.831e-2639.06Chlorophyll a-b binding protein 40, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-964 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-012_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF418034 ID=CF418034; Name=CF418034; organism=Citrus sinensis; type=EST; length=683bp
AGTGGTTACCGGGCTTGGCCTCGCCAACTTACCTCAACGGCAGCCTCCCC
GGTGACAATGGATTTGACCCCTTGGGGCTTGCCGAGGATCCTGAGAACTT
GAAGTGGTATGTGCAAGCCGAGCTTGTGAATTCGCGCTGGGCCATGTTGG
GTGTTGTTGGAATGTTGTTGCCCGAAGTTTTCACAAAGATTGGAATTATT
AATGTTCCTCAATGGTATGATGCTGGGAAGGCTGAGTACTTTGCATCATC
ATCGACCCTTTTCGTGATCGAGTTCATCTTGTTCCACTATGTGGAGATAA
GAAGATGGCAAGACATAAAGAACCCAGGAAGTGTCAACCAAGACCCCATT
TTCAAGCAGTACAGCTTGCCTCCAAACGAAGTTGGGTACCCCGGTGGCAT
CTTCAACCCACTCAACTTTGCACCCACTGATGAGGCAAAGGAGAAGGAGC
TTGCCAATGGGAGATTGGCAATGTTGGCATTCTTGGGATTTATTGTTCAG
CACAATGTGACAGGCAAAGGGCCATTTGAAAACCTCCTGCAACATATCTC
TGACCCATGGCACAACACCATCGTCCAGACACTTAGTGGTAATTAATCAA
AGATGGATTGGCAATTCGGGATCCTGTTTCTTTCTTTTGTACCATGAATC
TGTAGTTTTTGAGTGAAATTGAGCATCAATGTA
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