CF418040

Overview
NameCF418040
Unique NameCF418040
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11173 contig Csv1_Contig11173:585..1264. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: ODPB_HUMAN (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Homo sapiens GN=PDHB PE=1 SV=3)

HSP 1 Score: 241.891 bits (616), Expect = 2.356e-63
Identity = 119/199 (59.80%), Postives = 152/199 (76.38%), Query Frame = 3
Query:    3 VGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRA 596
            V AQHS C+AAWY   PGLKV+SP++SEDA+GL+K+AIRD +PVV LENEL+YG  F    E     F +PIGKAKIER+G  +T+ + S+ VG  L+AA +L+KEG+  EVIN+R+IRP+D  TI ASV KTN LVTVE G+PQ GVGAEICA ++E  +F++LDAP  R+ GADVPMPYA  LE  ++PQV+DI+ A
Sbjct:  154 VAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKDIIFA 352          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: ODPB_CAEEL (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Caenorhabditis elegans GN=C04C3.3 PE=1 SV=2)

HSP 1 Score: 231.491 bits (589), Expect = 3.185e-60
Identity = 119/203 (58.62%), Postives = 150/203 (73.89%), Query Frame = 3
Query:    3 VGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAXRA 608
            V AQHS  ++AWYA  PGLKV+ PYS+EDA+GLLKAAIRD +PVVFLENE+LYG+SFPV  EVL   F +PIGKAKIER G  VTI ++S+ V  SL+AA+ L   G+SAEVINLRS+RP D  +I  SV KT+ LV+VE G+P  G+G+EI A V+E + F  LDAP+ R+ G DVPMPY   LE  A+P  E +V+A  ++
Sbjct:  146 VAAQHSQDFSAWYAHCPGLKVVCPYSAEDAKGLLKAAIRDDNPVVFLENEILYGQSFPVGDEVLSDDFVVPIGKAKIERAGDHVTIVSYSRGVEFSLEAAKQLEAIGVSAEVINLRSLRPFDFESIRQSVHKTHHLVSVETGWPFAGIGSEIAAQVMESDVFDQLDAPLLRVTGVDVPMPYTQTLEAAALPTAEHVVKAVKKS 348          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: ODPB_ZYMMO (Pyruvate dehydrogenase E1 component subunit beta OS=Zymomonas mobilis GN=pdhB PE=3 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 2.282e-58
Identity = 118/205 (57.56%), Postives = 146/205 (71.22%), Query Frame = 3
Query:    3 VGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAXRACYR 617
            VGAQH+  +  WYA+VPGL VL+PY + DA+GLLKAAIR  DPVVFLE ELLYG++F V        F LPIGKA+I REGKDVTI ++S  V  +L AAE LAKEGI AEVI+LR++RPLD+ TI  S+ KTNR+VTVE+G+P   + +EI A  +EE F  LDAPV R+  AD P PYA NLE+  +   E I+ A  + CYR
Sbjct:  260 VGAQHTQNFGPWYAAVPGLVVLAPYDAIDAKGLLKAAIRSDDPVVFLECELLYGKTFDVPKM---DDFVLPIGKARIIREGKDVTIVSYSIGVSFALTAAEALAKEGIDAEVIDLRTLRPLDKETILQSLAKTNRIVTVEDGWPVCSISSEIAAIAMEEGFDNLDAPVLRVTNADTPTPYAENLEKKGLVNPEAIIEAVRKVCYR 461          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: ODPB_ASCSU (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Ascaris suum PE=1 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.304e-57
Identity = 114/198 (57.58%), Postives = 138/198 (69.70%), Query Frame = 3
Query:    3 VGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVR 593
            V  QHS  + AW+   PG+KV+ PY  EDARGLLKAA+RD +PV+ LENE+LYG  FPVS E     F LP G+AKI+R GKD+TI + S  V +SL AA+ LAK GI  EVINLR +RPLD  T+  SV KT  LVTVE G+P  GVGAEI A V E ++F YLD P+ R+ G DVPMPYA  LE  A+PQ  D+V+
Sbjct:  155 VAQQHSQDFTAWFMHCPGVKVVVPYDCEDARGLLKAAVRDDNPVICLENEILYGMKFPVSPEAQSPDFVLPFGQAKIQRPGKDITIVSLSIGVDVSLHAADELAKSGIDCEVINLRCVRPLDFQTVKDSVIKTKHLVTVESGWPNCGVGAEISARVTESDAFGYLDGPILRVTGVDVPMPYAQPLETAALPQPADVVK 352          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: ODPB_RICFE (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia felis GN=pdhB PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.136e-56
Identity = 112/207 (54.11%), Postives = 147/207 (71.01%), Query Frame = 3
Query:    3 VGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAXRACYRSV 623
            V AQHS  Y A Y+ VPGLKV++PYS+ED +GL+  AIRD +PV+FLENE+LYG SF V   +      +P G+AKI REG  VTI  FS  V L+L AA +L  + I  EVI+LR+I+PLD  TI  SV+KTNRLV VEEG+   GVGA I + V++E+F YLDAP+E ++G DVP+P+A NLE++A+P   D++ A  + CY SV
Sbjct:  124 VAAQHSQNYTACYSHVPGLKVVAPYSAEDHKGLMLTAIRDDNPVIFLENEILYGHSFDVPETIEP----IPFGQAKILREGSSVTIVTFSIQVKLALDAANVLQNDNIDCEVIDLRTIKPLDTDTIIESVKKTNRLVIVEEGWFFAGVGASIASIVMKEAFDYLDAPIEIVSGKDVPLPFAVNLEKLALPSESDVIEAVKKVCYYSV 326          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: ODPB_RICBR (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia bellii (strain RML369-C) GN=pdhB PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 3.644e-56
Identity = 111/204 (54.41%), Postives = 147/204 (72.06%), Query Frame = 3
Query:    3 VGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAXRACY 614
            V AQHS  YAA Y+ +PGLKV++PYS+ED +GL+  AIRD +PV+FLENE+LYG SF +S  V      +P GKAK+ +EG  VTI  FS  V L+L AA IL  + I+ EVI+LR+I+PLD  TI  SV+KT RLV +EEG+   G+GA I A V++E+F YLDAPVE ++G DVP+PYA NLE++A+P   D++ A  + CY
Sbjct:  124 VAAQHSQNYAACYSYIPGLKVVAPYSAEDHKGLMITAIRDDNPVIFLENEILYGHSFDISENVEP----IPFGKAKVLKEGDSVTIVTFSIQVKLALDAANILQSDNINCEVIDLRTIKPLDIDTIIESVKKTGRLVVIEEGWFFAGIGATIAAIVMKEAFDYLDAPVEIVSGKDVPLPYAVNLEKLALPSEYDVINAVKKVCY 323          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: ODPB_RICCN (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia conorii GN=pdhB PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.808e-55
Identity = 110/207 (53.14%), Postives = 145/207 (70.05%), Query Frame = 3
Query:    3 VGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAXRACYRSV 623
            V AQHS  Y A Y+ +PGLKV++PYS+ED +GL+  AIRD +PVVFLENE+LYG SF V   +      +P G+AKI REG  VTI  FS  V L+L AA  +  + I  EVI+LR+I+PLD  TI  SV+KTNRLV VEEG+   GVGA I + V++E+F YLDAP+E ++G D+P+PYA NLE +A+P   D++ A  + CY S+
Sbjct:  124 VAAQHSQNYTACYSHIPGLKVVAPYSAEDHKGLMLTAIRDDNPVVFLENEILYGHSFDVPKTIEP----IPFGQAKILREGSSVTIVTFSIQVKLALDAANFVQNDNIDCEVIDLRTIKPLDTETIIESVKKTNRLVVVEEGWFFAGVGASIASIVMKEAFDYLDAPIEIVSGKDLPLPYAVNLETLALPSESDVIEAVKKVCYYSI 326          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: ODPB_RICPR (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia prowazekii GN=pdhB PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.172e-54
Identity = 107/207 (51.69%), Postives = 148/207 (71.50%), Query Frame = 3
Query:    3 VGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAXRACYRSV 623
            V AQHS  Y A Y+ +PGLKV++PYS+ED +GL+  AIRD +PV+FLENE+LYG SF V  ++++    +P  KAKI +EG +VTI  FS  V L+L    IL  + I  E+I+LR+I+PLD  +I  SV+KTNRLV VEEG+   GVGA I + V++E+F YLDAP+E ++G DVP+PYA NLE++A+P   D++ A  + CY S+
Sbjct:  124 VAAQHSQNYTACYSHIPGLKVVAPYSAEDHKGLMLTAIRDDNPVIFLENEILYGHSFDVP-DIIEP---IPFSKAKILKEGSNVTIVTFSIQVKLALDVVNILQNDNIDCELIDLRTIKPLDTDSIIESVKKTNRLVIVEEGWFFAGVGASIASIVMKEAFDYLDAPIEIVSGKDVPLPYAVNLEKLAMPSANDLIEAVKKVCYYSI 326          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: ODPB_RICTY (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia typhi GN=pdhB PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.410e-54
Identity = 106/207 (51.21%), Postives = 148/207 (71.50%), Query Frame = 3
Query:    3 VGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAXRACYRSV 623
            V AQHS  Y A Y+ +PGLKV++PYS+ED +GL+  AIRD +PV+FLENE+LYG SF V  ++++    +P  KAKI +EG +VTI  FS  V L+L    IL  + I  E+I+LR+I+PLD + I  SV+KTNRLV VEEG+   GVGA I + V++E+F YLDAP+E ++G DVP+PYA NLE++A+P   D++ A  + CY ++
Sbjct:  124 VAAQHSQNYTACYSHIPGLKVVAPYSAEDHKGLMLTAIRDDNPVIFLENEILYGHSFDVP-DIIEP---IPFSKAKILKEGSNVTIVTFSIQVKLALDVVNILQNDNIDCELIDLRTIKPLDTNMIIESVKKTNRLVIVEEGWFFAGVGASIASIVMKEAFDYLDAPIEIVSGKDVPLPYAVNLEKLAMPSANDLIEAVKKVCYYTI 326          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: ODPB_BACST (Pyruvate dehydrogenase E1 component subunit beta OS=Bacillus stearothermophilus GN=pdhB PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 5.844e-38
Identity = 91/197 (46.19%), Postives = 124/197 (62.94%), Query Frame = 3
Query:   15 HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAXR 605
            HS       A  PGLKV+ P +  DA+GLL +AIRD DPV+FLE+  LY  SF    EV +  + +PIGKA I+REGKD+TI A+  +V  SLKAA  L KEGISAEV++LR+++PLD  TI  SV KT R + V+E   Q G+ A + A + E +   L+APV R+A  D   P+ A  E + +P  +D++  A +
Sbjct:  129 HSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAIRDNDPVIFLEHLKLY-RSF--RQEVPEGEYTIPIGKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRTVQPLDIETIIGSVEKTGRAIVVQEAQRQAGIAANVVAEINERAILSLEAPVLRVAAPDTVYPF-AQAESVWLPNFKDVIETAKK 321          
The following BLAST results are available for this feature:
BLAST of CF418040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
ODPB_HUMAN2.356e-6359.80Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_CAEEL3.185e-6058.62Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_ZYMMO2.282e-5857.56Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ASCSU4.304e-5757.58Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_RICFE2.136e-5654.11Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICBR3.644e-5654.41Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICCN1.808e-5553.14Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICPR1.172e-5451.69Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICTY3.410e-5451.21Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_BACST5.844e-3846.19Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-970 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-012_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF418040 ID=CF418040; Name=CF418040; organism=Citrus sinensis; type=EST; length=680bp
GAGTGGGTGCCCAACACTCTCACTGTTATGCAGCATGGTATGCCTCAGTC
CCTGGGTTGAAAGTACTGAGCCCATACAGTTCTGAAGATGCTCGTGGACT
GCTAAAAGCTGCTATAAGGGATCCGGATCCTGTTGTTTTTCTTGAAAATG
AGTTGTTATATGGTGAGTCATTCCCGGTATCAGCTGAAGTTCTTGATTCC
AGTTTTTGCCTTCCAATTGGGAAAGCTAAAATTGAGAGAGAAGGAAAGGA
TGTAACCATTACAGCTTTCTCAAAAATTGTGGGCCTTTCACTCAAGGCGG
CTGAGATACTTGCAAAGGAAGGAATAAGTGCTGAGGTTATCAATCTGCGG
TCAATTAGGCCACTAGATAGATCCACAATCAATGCTTCTGTCAGAAAAAC
TAACAGACTGGTAACAGTTGAAGAAGGGTTCCCTCAGCATGGAGTTGGTG
CCGAAATCTGTGCATCCGTTATTGAGGAAAGCTTCAGTTATCTTGATGCA
CCAGTTGAGAGAATTGCTGGAGCTGATGTTCCAATGCCATATGCAGCCAA
TCTTGAGAGAATGGCTGTCCCACAGGTTGAAGATATTGTCCGAGCTGCCN
AGAGAGCATGCTACAGATCTGTGCCNATGGCTGCTGCAGCATAAAAGAAC
TGATTCTGCCCTGAAGCTTTGTCAGATCCT
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