CF418040

Overview
NameCF418040
Unique NameCF418040
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11173 contig Csv1_Contig11173:585..1264. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: ODPB_CHAGL (Pyruvate dehydrogenase E1 component subunit beta OS=Chaetosphaeridium globosum GN=pdhB PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.302e-37
Identity = 76/203 (37.44%), Postives = 134/203 (66.01%), Query Frame = 3
Query:    3 VGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAXRAC 611
            +GA+HS    +++ SVPGL++++  +  + +GLLK+AIR+ +PV+F E+ LLY     ++  +++  + L + KA++ R G D+TI  +S++    L+AA++L  +G   E+I++ S++PLD  TI+ SVRKT++++ VEE     G+GA + A+++E+ F YLDAP++ ++  DVP PY+  LE + V Q   I++A    C
Sbjct:  125 LGAEHSQRLESYFQSVPGLQMVACSTPYNGKGLLKSAIRNDNPVIFFEHVLLYN----LNENLIEQEYLLCLEKAEVVRPGNDITILTYSRMRHHVLQAAKVLVNKGYDPEIIDILSLKPLDMGTISLSVRKTHKVLIVEECMRTGGIGASLRAAILEDLFDYLDAPIQCLSSQDVPTPYSGPLEELTVIQPNQIIQAVEEMC 323          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: ACOB_RALEH (Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=acoB PE=1 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 1.302e-37
Identity = 80/199 (40.20%), Postives = 121/199 (60.80%), Query Frame = 3
Query:    9 AQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAXR 605
            AQHS      +  +PGLKV+ P +  D +GLL  AIRD DPV+F E++ LYG    +  EV + ++ +P G+A I R+GKDV+I  +  +V  +L+AA  LAKEGI AE+++LR++ PLD  T+  SV  T RLV V+E  P+  +  +I A V +++F  L A +E +     P+P++  LE + +P    I  AA +
Sbjct:  137 AQHSQMLTPLFTHIPGLKVVCPSTPYDTKGLLIQAIRDNDPVIFCEHKNLYG----LEGEVPEGAYAIPFGEANIVRDGKDVSIVTYGLMVHRALEAAATLAKEGIEAEIVDLRTLSPLDMDTVLESVENTGRLVVVDEASPRCNIATDISAQVAQQAFGALKAGIEMVCPPHTPVPFSPTLEDLYIPSAAQIAAAARK 331          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: ODPB_PORPU (Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra purpurea GN=pdhB PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.788e-37
Identity = 79/198 (39.90%), Postives = 129/198 (65.15%), Query Frame = 3
Query:    3 VGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRA 596
            +GA+HS    A++ ++PGLK+++  +  +A+GLLK+AIRD +PVVF E+ LLY     +  E+ +  + +P+ KA++ R+GKD+TI  +S++     +A  +L  +G   EV++L S++PLD  +I+ SV+KT+R++ VEE     G+GAE+ A + E  F  LDAPV R++  D+P PY  +LE+  V Q   I+ A
Sbjct:  125 LGAEHSQRLEAYFQAIPGLKIVACSTPYNAKGLLKSAIRDNNPVVFFEHVLLYN----LQEEIPEDEYLIPLDKAEVVRKGKDITILTYSRMRHHVTEALPLLLNDGYDPEVLDLISLKPLDIDSISVSVKKTHRVLIVEECMKTAGIGAELIAQINEHLFDELDAPVVRLSSQDIPTPYNGSLEQATVIQPHQIIDA 318          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: ODPB_PORYE (Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra yezoensis GN=pdhB PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.102e-36
Identity = 81/196 (41.33%), Postives = 126/196 (64.29%), Query Frame = 3
Query:    3 VGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIV 590
            +GA+HS    A++ ++PGLK+++  +  +A+GLLK+AIRD +PVVF E+ LLY     +  E+    + LP+ K +  R+GKD+TI  +S++    ++A   L KEG   EVI+L S++PLD  +I+ SV+KT++++ VEE     G+GAE+ A + E  F  LDAPV R++  D+P PY  +LE+  V Q   IV
Sbjct:  125 LGAEHSQRLEAYFQAIPGLKIVACSTPYNAKGLLKSAIRDNNPVVFFEHVLLYN----LQEEIPQEEYFLPLNKVEFVRKGKDITILTYSRMRHHVIQALPALLKEGYDPEVIDLISLKPLDIDSISISVKKTHKVLIVEECMKTAGIGAELIAQINEYLFDELDAPVVRLSSQDIPTPYNGSLEQATVIQPSQIV 316          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: ACOB_BACSU (Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta OS=Bacillus subtilis GN=acoB PE=3 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 1.880e-36
Identity = 81/194 (41.75%), Postives = 118/194 (60.82%), Query Frame = 3
Query:    9 AQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIV 590
            AQHS      + S+PGLK + P +  DA+GLL AAI D DPV F E++  Y     +  EV +  + +P+GKA I+REG DVT+ A  K V  +L+AA  L++ GI AEV++ RS+ PLD   I  S+ KTNRL+ ++E  P+  +  +I A V ++ F  LDAP++RI     P+P++  LE   +P  + IV
Sbjct:  140 AQHSQSLYGLFTSIPGLKTVVPSNPYDAKGLLLAAIEDNDPVFFFEDKTSYN----MKGEVPEDYYTIPLGKADIKREGNDVTLFAVGKQVNTALEAAAQLSERGIEAEVLDPRSLSPLDEDAIFTSLEKTNRLIIIDEANPRCSIATDIAALVADKGFDLLDAPIKRITAPHTPVPFSPVLEDQYLPTPDKIV 329          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: ODPB_CYAME (Pyruvate dehydrogenase E1 component subunit beta OS=Cyanidioschyzon merolae GN=pdhB PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.455e-36
Identity = 79/198 (39.90%), Postives = 126/198 (63.64%), Query Frame = 3
Query:    3 VGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRA 596
            + A+HS    A++ +VPGLK+++  +  +A+GLLKAAIRD +PV+FLE+ LLY     +  E+    + LP+ KA++ REG DVTI  +S+++   ++A + L  +G++ EVI+L S++P+D  T+  SV KT++ + VEE     G+ AE+ A +   +F  LDAP+ R++  DVP PY   LE+  + Q   IV A
Sbjct:  126 LSAEHSQRIEAYFQAVPGLKIVACSTPYNAKGLLKAAIRDNNPVLFLEHVLLYN----LKQEIPKQEYVLPLDKAQVVREGSDVTIITYSRMLHHVMQAVKQLVAQGMNPEVIDLISLKPIDLETLVTSVSKTHKAIIVEECMQTGGIAAEVMAQIYSHAFDELDAPIRRLSSKDVPTPYNGYLEQACLVQPTQIVEA 319          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: ODPB_GRATL (Pyruvate dehydrogenase E1 component subunit beta OS=Gracilaria tenuistipitata var. liui GN=pdhB PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.592e-35
Identity = 77/198 (38.89%), Postives = 128/198 (64.65%), Query Frame = 3
Query:    3 VGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRA 596
            +GA+HS    A++ ++PGLK+++  +  +A+GLLK+AIRD +PV+F E+ LLY     +  E+ +  + LP+ KA++ R+G DVTI  +S++    ++A   L  +G + EVI+L S++PLD ++I  S+ KT++L+ VEE     G+GAEI A + +  F +LDAP+ R++  D+P PY   LE+  V   + I+ A
Sbjct:  125 LGAEHSQRLEAYFQAIPGLKIVACSTPYNAKGLLKSAIRDNNPVIFFEHVLLYN----LKDELPNDEYFLPLDKAELVRDGLDVTILTYSRMRHHVMQAVVDLVNDGYNPEVIDLISLKPLDITSIAQSLMKTHKLIIVEECMKTGGIGAEIIAQINDNYFDFLDAPIVRLSSQDIPTPYNGKLEKATVIYPQQIIEA 318          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: ODBB_BACSU (2-oxoisovalerate dehydrogenase subunit beta OS=Bacillus subtilis GN=bfmBAB PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.079e-35
Identity = 82/198 (41.41%), Postives = 123/198 (62.12%), Query Frame = 3
Query:   15 HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVP-MPYAANLERMAVPQVEDIVRAAXR 605
            HS    A +A+ PGLK++ P +  DA+GLLKAA+RD DPV+F E++  Y     +  EV    + LPIGKA ++REG D+T+  +   V  +L+AAE L K+GISA V++LR++ PLD+  I  +  KT +++ V E   +  + +E+ A + E     LDAP++R+AG D+P MPYA  +E+  +    D V AA R
Sbjct:  129 HSQSVEAIFANQPGLKIVMPSTPYDAKGLLKAAVRDEDPVLFFEHKRAYRL---IKGEVPADDYVLPIGKADVKREGDDITVITYGLCVHFALQAAERLEKDGISAHVVDLRTVYPLDKEAIIEAASKTGKVLLVTEDTKEGSIMSEVAAIISEHCLFDLDAPIKRLAGPDIPAMPYAPTMEKYFMVN-PDKVEAAMR 322          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: ODBB_THET8 (2-oxoisovalerate dehydrogenase subunit beta OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=TTHA0230 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.120e-34
Identity = 85/201 (42.29%), Postives = 119/201 (59.20%), Query Frame = 3
Query:    6 GAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAXRA 608
            G  HS    A +    GLKV++  +  DA+GLLKAAIRD DPVVFLE + LY     V  EV +  + LPIGKA + REGKD+T+  +  ++   L+AA  LAK G+SAEV++LR++ P D   +  SV KT R+V V +        +E+ A++ E+    L AP  R+ G D P PYA   +++ +P V  I+ AA RA
Sbjct:  126 GHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIRDEDPVVFLEPKRLYRS---VKEEVPEEDYTLPIGKAALRREGKDLTLIGYGTVMPEVLQAAAELAKAGVSAEVLDLRTLMPWDYEAVMNSVAKTGRVVLVSDAPRHASFVSEVAATIAEDLLDMLLAPPIRVTGFDTPYPYAQ--DKLYLPTVTRILNAAKRA 321          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: ODPB_BACSU (Pyruvate dehydrogenase E1 component subunit beta OS=Bacillus subtilis GN=pdhB PE=3 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 8.733e-34
Identity = 82/197 (41.62%), Postives = 122/197 (61.93%), Query Frame = 3
Query:   15 HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAXR 605
            H+       A  PG+KV+ P +  DA+GLL +AIRD DPVVFLE+  LY  SF    EV +  + + +GKA ++REG D++I  +  +V  SLKAA+ L K+GISAEV++LR++ PLD  TI ASV KT R + V+E   Q G+ A + A + + +   L+APV R+A  D   P+ +  E + +P  +D++  A +
Sbjct:  129 HADSLEGLVAQQPGIKVVIPSTPYDAKGLLISAIRDNDPVVFLEHMKLY-RSF--RQEVPEEEYTIELGKADVKREGTDLSIITYGAMVHESLKAADELEKDGISAEVVDLRTVSPLDIDTIIASVEKTGRAIVVQEAQKQAGIAANVVAEINDRAILSLEAPVLRVAAPDTVFPF-SQAESVWLPNHKDVLETARK 321          
The following BLAST results are available for this feature:
BLAST of CF418040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
ODPB_CHAGL1.302e-3737.44Pyruvate dehydrogenase E1 component subunit beta O... [more]
ACOB_RALEH1.302e-3740.20Acetoin:2,6-dichlorophenolindophenol oxidoreductas... [more]
ODPB_PORPU3.788e-3739.90Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_PORYE1.102e-3641.33Pyruvate dehydrogenase E1 component subunit beta O... [more]
ACOB_BACSU1.880e-3641.75Acetoin:2,6-dichlorophenolindophenol oxidoreductas... [more]
ODPB_CYAME2.455e-3639.90Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_GRATL1.592e-3538.89Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODBB_BACSU2.079e-3541.412-oxoisovalerate dehydrogenase subunit beta OS=Bac... [more]
ODBB_THET85.120e-3442.292-oxoisovalerate dehydrogenase subunit beta OS=The... [more]
ODPB_BACSU8.733e-3441.62Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-970 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-012_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF418040 ID=CF418040; Name=CF418040; organism=Citrus sinensis; type=EST; length=680bp
GAGTGGGTGCCCAACACTCTCACTGTTATGCAGCATGGTATGCCTCAGTC
CCTGGGTTGAAAGTACTGAGCCCATACAGTTCTGAAGATGCTCGTGGACT
GCTAAAAGCTGCTATAAGGGATCCGGATCCTGTTGTTTTTCTTGAAAATG
AGTTGTTATATGGTGAGTCATTCCCGGTATCAGCTGAAGTTCTTGATTCC
AGTTTTTGCCTTCCAATTGGGAAAGCTAAAATTGAGAGAGAAGGAAAGGA
TGTAACCATTACAGCTTTCTCAAAAATTGTGGGCCTTTCACTCAAGGCGG
CTGAGATACTTGCAAAGGAAGGAATAAGTGCTGAGGTTATCAATCTGCGG
TCAATTAGGCCACTAGATAGATCCACAATCAATGCTTCTGTCAGAAAAAC
TAACAGACTGGTAACAGTTGAAGAAGGGTTCCCTCAGCATGGAGTTGGTG
CCGAAATCTGTGCATCCGTTATTGAGGAAAGCTTCAGTTATCTTGATGCA
CCAGTTGAGAGAATTGCTGGAGCTGATGTTCCAATGCCATATGCAGCCAA
TCTTGAGAGAATGGCTGTCCCACAGGTTGAAGATATTGTCCGAGCTGCCN
AGAGAGCATGCTACAGATCTGTGCCNATGGCTGCTGCAGCATAAAAGAAC
TGATTCTGCCCTGAAGCTTTGTCAGATCCT
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