CF418040
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: ODBB_PSEAE (2-oxoisovalerate dehydrogenase subunit beta OS=Pseudomonas aeruginosa GN=bkdA2 PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.595e-27 Identity = 75/193 (38.86%), Postives = 109/193 (56.48%), Query Frame = 3 Query: 6 GAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESF------PVS-------AEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYA 545 G HS A + V GL+ + P + DA+GLL A I + DPV+FLE + LY F PV+ ++V D + +P+ KA I R G +T+ + +V ++ AA+ + G+ AE+I+LRS+ PLD TI ASV+KT R V E G GAE+ + V E F +L+AP+ER+ G D P P+A Sbjct: 139 GQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIACIENDDPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPASQVPDGYYKVPLDKAAIVRPGAALTVLTYGTMVYVAQAAAD---ETGLDAEIIDLRSLWPLDLETIVASVKKTGRCVIAHEATRTCGFGAELMSLVQEHCFHHLEAPIERVTGWDTPYPHA 328
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: ODBB_HUMAN (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Homo sapiens GN=BCKDHB PE=1 SV=2) HSP 1 Score: 114.005 bits (284), Expect = 7.410e-25 Identity = 70/178 (39.33%), Postives = 105/178 (58.99%), Query Frame = 3 Query: 15 HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE--GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPY 542 HS A++A PG+KV+ P S A+GLL + I D +P +F E ++LY + + EV + +P+ +A++ +EG DVT+ A+ V + + A +AKE G+S EVI+LR+I P D TI SV KT RL+ E G +EI ++V EE F L+AP+ R+ G D P P+ Sbjct: 196 HSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAA---AEEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVAS-MAKEKLGVSCEVIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPH 369
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: ODBB_BOVIN (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Bos taurus GN=BCKDHB PE=1 SV=2) HSP 1 Score: 111.309 bits (277), Expect = 4.803e-24 Identity = 65/177 (36.72%), Postives = 103/177 (58.19%), Query Frame = 3 Query: 15 HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPY 542 HS A++A PG+KV+ P S A+GLL + I D +P +F E ++LY + +V + +P+ +A++ +EG DVT+ A+ V + + A + ++ G+S EVI+LR+I P D T+ SV KT RL+ E G +EI ++V EE F L+AP+ R+ G D P P+ Sbjct: 196 HSQSPEAFFAHCPGIKVVVPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAVE---QVPVEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVAAMAQEKLGVSCEVIDLRTILPWDVDTVCKSVIKTGRLLVSHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPH 369
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: ODBB_RAT (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Rattus norvegicus GN=Bckdhb PE=1 SV=3) HSP 1 Score: 110.923 bits (276), Expect = 6.273e-24 Identity = 65/177 (36.72%), Postives = 103/177 (58.19%), Query Frame = 3 Query: 15 HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPY 542 HS A++A PG+KV+ P S A+GLL + I D +P +F E ++LY + +V + +P+ +A++ +EG DVT+ A+ V + + A + ++ G+S EVI+LR+I P D T+ SV KT RL+ E G +EI ++V EE F L+AP+ R+ G D P P+ Sbjct: 194 HSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAVE---QVPVEPYKIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAQEKLGVSCEVIDLRTIVPWDVDTVCKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPH 367
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: ODBB_MOUSE (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Mus musculus GN=Bckdhb PE=2 SV=2) HSP 1 Score: 110.923 bits (276), Expect = 6.273e-24 Identity = 65/177 (36.72%), Postives = 103/177 (58.19%), Query Frame = 3 Query: 15 HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPY 542 HS A++A PG+KV+ P S A+GLL + I D +P +F E ++LY + +V + +P+ +A++ +EG DVT+ A+ V + + A + ++ G+S EVI+LR+I P D T+ SV KT RL+ E G +EI ++V EE F L+AP+ R+ G D P P+ Sbjct: 194 HSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAVE---QVPVEPYKIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAQEKLGVSCEVIDLRTIVPWDVDTVCKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPH 367
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: ODPB_MYCGE (Pyruvate dehydrogenase E1 component subunit beta OS=Mycoplasma genitalium GN=pdhB PE=3 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 8.193e-24 Identity = 67/179 (37.43%), Postives = 99/179 (55.31%), Query Frame = 3 Query: 15 HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVG--LSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYA 545 HS A YA + GLK + P + D +GL AAI PDPV+F E + LY E+ + +PIG+A + EG ++TI ++ + ++L + L +GI E+I+LR+I P D+ T+ SV+KT RL+ V E AEI SV EE F+YL +R+ G D+ +P A Sbjct: 131 HSETLEAIYAQIAGLKTVMPSNPYDTKGLFLAAIESPDPVIFFEPKKLYRA---FRQEIPSDYYTVPIGEANLISEGSELTIVSYGPTMFDLINLVYSGELKDKGI--ELIDLRTISPWDKQTVFNSVKKTGRLLVVTEAVKSFTTSAEIITSVTEELFTYLKKAPQRVTGFDIVVPLA 304
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: ODPB_MYCPN (Pyruvate dehydrogenase E1 component subunit beta OS=Mycoplasma pneumoniae GN=pdhB PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 6.936e-23 Identity = 66/179 (36.87%), Postives = 98/179 (54.75%), Query Frame = 3 Query: 15 HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVG--LSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYA 545 HS A Y + GLK + P + D +GL AA+ PDPVVF E + LY E+ + +PIG+A + +G ++TI ++ + +++ L +GI E+I+LR+I P D+ T+ SV+KT RL+ V E EI ASV EE FSYL A +R+ G D+ +P A Sbjct: 132 HSETLEAIYGQIAGLKTVMPSNPYDTKGLFLAAVESPDPVVFFEPKKLYRA---FRQEIPADYYTVPIGQANLISQGNNLTIVSYGPTMFDLINMVYGGELKDKGI--ELIDLRTISPWDKETVFNSVKKTGRLLVVTEAAKTFTTSGEIIASVTEELFSYLKAAPQRVTGWDIVVPLA 305
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: DXS_DESAP (1-deoxy-D-xylulose-5-phosphate synthase OS=Desulforudis audaxviator (strain MP104C) GN=dxs PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.553e-17 Identity = 53/167 (31.74%), Postives = 87/167 (52.10%), Query Frame = 3 Query: 48 VPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAA 548 VP L +++P + + +LK A+ P+ + Y + LPIG+A++ REG D+T+ A +V ++KAAEILA+ GI A V+N R ++PLD I R+T RL+T+EE G G+ + ++ + + D V+ I DV + + A Sbjct: 438 VPNLVMMAPKDENEFQHMLKTAVEHEGPIA-----VRYPRGTGTGCALDQDLVALPIGRAEVLREGDDITLIAIGNMVPTAVKAAEILAERGIEASVVNARFVKPLDEKCICHYARRTGRLITLEENVIAGGFGSAVQELLVAKGLT--DVRVQLIGLPDVFIEHGA 597
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: DXS_PELTS (1-deoxy-D-xylulose-5-phosphate synthase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=dxs PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.161e-16 Identity = 50/152 (32.89%), Postives = 81/152 (53.29%), Query Frame = 3 Query: 6 GAQHSHCYAAWYAS-VPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 458 GA H + Y +P + +++P + + +L A+ P P + Y S + DS +P+G+A++ R+G +VT+ A +V L++KAAEILA GI A VIN R ++PLD+ I R+T + T+EE Q G G+ + Sbjct: 424 GATHHGLFDFSYLRPIPNMVIMAPKDENELQHMLYTALSHPGPAA-----VRYPRSAGTGCRMDDSFKIIPLGRAEVLRDGTEVTLLAVGSMVCLAVKAAEILAGHGIDAAVINARFVKPLDKECILRYARRTREVFTLEENVLQGGFGSAV 570
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: DXS_THERP (1-deoxy-D-xylulose-5-phosphate synthase OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=dxs PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 8.212e-16 Identity = 63/187 (33.69%), Postives = 95/187 (50.80%), Query Frame = 3 Query: 33 AWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYA--ANLERMAVPQVEDI 587 A+ +P + +++P ++ R +L A+ + + L Y V +L LPIG+A++ REG DV I A V + +AA+ILA+ GI A VIN R ++PLDRS I + R+ LVTVEE G G+ + ++ + L PV R+ AD +A A+L R A E I Sbjct: 428 AYLRCLPNMVLMAPKDEDELRHMLATALAYEEGPIALR----YPRGSGVGVPMLGEPRVLPIGRAELLREGSDVAIVALGATVLPAERAADILAERGIRATVINARFVKPLDRSLILDAARECGCLVTVEEAQLAGGFGSAVLETLADAG---LLIPVLRLGLADRFFDHASQASLRRQAGIDAESI 607 The following BLAST results are available for this feature:
BLAST of CF418040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 128
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Sequences
The
following sequences are available for this feature:
EST sequence >CF418040 ID=CF418040; Name=CF418040; organism=Citrus sinensis; type=EST; length=680bpback to top |