CF418040

Overview
NameCF418040
Unique NameCF418040
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11173 contig Csv1_Contig11173:585..1264. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: ODBB_PSEAE (2-oxoisovalerate dehydrogenase subunit beta OS=Pseudomonas aeruginosa GN=bkdA2 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.595e-27
Identity = 75/193 (38.86%), Postives = 109/193 (56.48%), Query Frame = 3
Query:    6 GAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESF------PVS-------AEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYA 545
            G  HS    A +  V GL+ + P +  DA+GLL A I + DPV+FLE + LY   F      PV+       ++V D  + +P+ KA I R G  +T+  +  +V ++  AA+   + G+ AE+I+LRS+ PLD  TI ASV+KT R V   E     G GAE+ + V E  F +L+AP+ER+ G D P P+A
Sbjct:  139 GQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIACIENDDPVIFLEPKRLYNGPFDGHHDRPVTPWSKHPASQVPDGYYKVPLDKAAIVRPGAALTVLTYGTMVYVAQAAAD---ETGLDAEIIDLRSLWPLDLETIVASVKKTGRCVIAHEATRTCGFGAELMSLVQEHCFHHLEAPIERVTGWDTPYPHA 328          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: ODBB_HUMAN (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Homo sapiens GN=BCKDHB PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 7.410e-25
Identity = 70/178 (39.33%), Postives = 105/178 (58.99%), Query Frame = 3
Query:   15 HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE--GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPY 542
            HS    A++A  PG+KV+ P S   A+GLL + I D +P +F E ++LY  +   + EV    + +P+ +A++ +EG DVT+ A+   V +  + A  +AKE  G+S EVI+LR+I P D  TI  SV KT RL+   E     G  +EI ++V EE F  L+AP+ R+ G D P P+
Sbjct:  196 HSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAA---AEEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVAS-MAKEKLGVSCEVIDLRTIIPWDVDTICKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPH 369          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: ODBB_BOVIN (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Bos taurus GN=BCKDHB PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 4.803e-24
Identity = 65/177 (36.72%), Postives = 103/177 (58.19%), Query Frame = 3
Query:   15 HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPY 542
            HS    A++A  PG+KV+ P S   A+GLL + I D +P +F E ++LY  +     +V    + +P+ +A++ +EG DVT+ A+   V +  + A +  ++ G+S EVI+LR+I P D  T+  SV KT RL+   E     G  +EI ++V EE F  L+AP+ R+ G D P P+
Sbjct:  196 HSQSPEAFFAHCPGIKVVVPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAVE---QVPVEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVAAMAQEKLGVSCEVIDLRTILPWDVDTVCKSVIKTGRLLVSHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPH 369          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: ODBB_RAT (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Rattus norvegicus GN=Bckdhb PE=1 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 6.273e-24
Identity = 65/177 (36.72%), Postives = 103/177 (58.19%), Query Frame = 3
Query:   15 HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPY 542
            HS    A++A  PG+KV+ P S   A+GLL + I D +P +F E ++LY  +     +V    + +P+ +A++ +EG DVT+ A+   V +  + A +  ++ G+S EVI+LR+I P D  T+  SV KT RL+   E     G  +EI ++V EE F  L+AP+ R+ G D P P+
Sbjct:  194 HSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAVE---QVPVEPYKIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAQEKLGVSCEVIDLRTIVPWDVDTVCKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPH 367          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: ODBB_MOUSE (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Mus musculus GN=Bckdhb PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 6.273e-24
Identity = 65/177 (36.72%), Postives = 103/177 (58.19%), Query Frame = 3
Query:   15 HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPY 542
            HS    A++A  PG+KV+ P S   A+GLL + I D +P +F E ++LY  +     +V    + +P+ +A++ +EG DVT+ A+   V +  + A +  ++ G+S EVI+LR+I P D  T+  SV KT RL+   E     G  +EI ++V EE F  L+AP+ R+ G D P P+
Sbjct:  194 HSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAVE---QVPVEPYKIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAQEKLGVSCEVIDLRTIVPWDVDTVCKSVIKTGRLLISHEAPLTGGFASEISSTVQEECFLNLEAPISRVCGYDTPFPH 367          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: ODPB_MYCGE (Pyruvate dehydrogenase E1 component subunit beta OS=Mycoplasma genitalium GN=pdhB PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.193e-24
Identity = 67/179 (37.43%), Postives = 99/179 (55.31%), Query Frame = 3
Query:   15 HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVG--LSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYA 545
            HS    A YA + GLK + P +  D +GL  AAI  PDPV+F E + LY        E+    + +PIG+A +  EG ++TI ++   +   ++L  +  L  +GI  E+I+LR+I P D+ T+  SV+KT RL+ V E        AEI  SV EE F+YL    +R+ G D+ +P A
Sbjct:  131 HSETLEAIYAQIAGLKTVMPSNPYDTKGLFLAAIESPDPVIFFEPKKLYRA---FRQEIPSDYYTVPIGEANLISEGSELTIVSYGPTMFDLINLVYSGELKDKGI--ELIDLRTISPWDKQTVFNSVKKTGRLLVVTEAVKSFTTSAEIITSVTEELFTYLKKAPQRVTGFDIVVPLA 304          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: ODPB_MYCPN (Pyruvate dehydrogenase E1 component subunit beta OS=Mycoplasma pneumoniae GN=pdhB PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.936e-23
Identity = 66/179 (36.87%), Postives = 98/179 (54.75%), Query Frame = 3
Query:   15 HSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVG--LSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYA 545
            HS    A Y  + GLK + P +  D +GL  AA+  PDPVVF E + LY        E+    + +PIG+A +  +G ++TI ++   +   +++     L  +GI  E+I+LR+I P D+ T+  SV+KT RL+ V E         EI ASV EE FSYL A  +R+ G D+ +P A
Sbjct:  132 HSETLEAIYGQIAGLKTVMPSNPYDTKGLFLAAVESPDPVVFFEPKKLYRA---FRQEIPADYYTVPIGQANLISQGNNLTIVSYGPTMFDLINMVYGGELKDKGI--ELIDLRTISPWDKETVFNSVKKTGRLLVVTEAAKTFTTSGEIIASVTEELFSYLKAAPQRVTGWDIVVPLA 305          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: DXS_DESAP (1-deoxy-D-xylulose-5-phosphate synthase OS=Desulforudis audaxviator (strain MP104C) GN=dxs PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.553e-17
Identity = 53/167 (31.74%), Postives = 87/167 (52.10%), Query Frame = 3
Query:   48 VPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAA 548
            VP L +++P    + + +LK A+    P+      + Y         +      LPIG+A++ REG D+T+ A   +V  ++KAAEILA+ GI A V+N R ++PLD   I    R+T RL+T+EE     G G+ +   ++ +  +  D  V+ I   DV + + A
Sbjct:  438 VPNLVMMAPKDENEFQHMLKTAVEHEGPIA-----VRYPRGTGTGCALDQDLVALPIGRAEVLREGDDITLIAIGNMVPTAVKAAEILAERGIEASVVNARFVKPLDEKCICHYARRTGRLITLEENVIAGGFGSAVQELLVAKGLT--DVRVQLIGLPDVFIEHGA 597          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: DXS_PELTS (1-deoxy-D-xylulose-5-phosphate synthase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=dxs PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.161e-16
Identity = 50/152 (32.89%), Postives = 81/152 (53.29%), Query Frame = 3
Query:    6 GAQHSHCYAAWYAS-VPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 458
            GA H   +   Y   +P + +++P    + + +L  A+  P P       + Y  S      + DS   +P+G+A++ R+G +VT+ A   +V L++KAAEILA  GI A VIN R ++PLD+  I    R+T  + T+EE   Q G G+ +
Sbjct:  424 GATHHGLFDFSYLRPIPNMVIMAPKDENELQHMLYTALSHPGPAA-----VRYPRSAGTGCRMDDSFKIIPLGRAEVLRDGTEVTLLAVGSMVCLAVKAAEILAGHGIDAAVINARFVKPLDKECILRYARRTREVFTLEENVLQGGFGSAV 570          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: DXS_THERP (1-deoxy-D-xylulose-5-phosphate synthase OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=dxs PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.212e-16
Identity = 63/187 (33.69%), Postives = 95/187 (50.80%), Query Frame = 3
Query:   33 AWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYA--ANLERMAVPQVEDI 587
            A+   +P + +++P   ++ R +L  A+   +  + L     Y     V   +L     LPIG+A++ REG DV I A    V  + +AA+ILA+ GI A VIN R ++PLDRS I  + R+   LVTVEE     G G+ +  ++ +     L  PV R+  AD    +A  A+L R A    E I
Sbjct:  428 AYLRCLPNMVLMAPKDEDELRHMLATALAYEEGPIALR----YPRGSGVGVPMLGEPRVLPIGRAELLREGSDVAIVALGATVLPAERAADILAERGIRATVINARFVKPLDRSLILDAARECGCLVTVEEAQLAGGFGSAVLETLADAG---LLIPVLRLGLADRFFDHASQASLRRQAGIDAESI 607          
The following BLAST results are available for this feature:
BLAST of CF418040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
ODBB_PSEAE1.595e-2738.862-oxoisovalerate dehydrogenase subunit beta OS=Pse... [more]
ODBB_HUMAN7.410e-2539.332-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_BOVIN4.803e-2436.722-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_RAT6.273e-2436.722-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_MOUSE6.273e-2436.722-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODPB_MYCGE8.193e-2437.43Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_MYCPN6.936e-2336.87Pyruvate dehydrogenase E1 component subunit beta O... [more]
DXS_DESAP2.553e-1731.741-deoxy-D-xylulose-5-phosphate synthase OS=Desulfo... [more]
DXS_PELTS2.161e-1632.891-deoxy-D-xylulose-5-phosphate synthase OS=Pelotom... [more]
DXS_THERP8.212e-1633.691-deoxy-D-xylulose-5-phosphate synthase OS=Thermom... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-970 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-012_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF418040 ID=CF418040; Name=CF418040; organism=Citrus sinensis; type=EST; length=680bp
GAGTGGGTGCCCAACACTCTCACTGTTATGCAGCATGGTATGCCTCAGTC
CCTGGGTTGAAAGTACTGAGCCCATACAGTTCTGAAGATGCTCGTGGACT
GCTAAAAGCTGCTATAAGGGATCCGGATCCTGTTGTTTTTCTTGAAAATG
AGTTGTTATATGGTGAGTCATTCCCGGTATCAGCTGAAGTTCTTGATTCC
AGTTTTTGCCTTCCAATTGGGAAAGCTAAAATTGAGAGAGAAGGAAAGGA
TGTAACCATTACAGCTTTCTCAAAAATTGTGGGCCTTTCACTCAAGGCGG
CTGAGATACTTGCAAAGGAAGGAATAAGTGCTGAGGTTATCAATCTGCGG
TCAATTAGGCCACTAGATAGATCCACAATCAATGCTTCTGTCAGAAAAAC
TAACAGACTGGTAACAGTTGAAGAAGGGTTCCCTCAGCATGGAGTTGGTG
CCGAAATCTGTGCATCCGTTATTGAGGAAAGCTTCAGTTATCTTGATGCA
CCAGTTGAGAGAATTGCTGGAGCTGATGTTCCAATGCCATATGCAGCCAA
TCTTGAGAGAATGGCTGTCCCACAGGTTGAAGATATTGTCCGAGCTGCCN
AGAGAGCATGCTACAGATCTGTGCCNATGGCTGCTGCAGCATAAAAGAAC
TGATTCTGCCCTGAAGCTTTGTCAGATCCT
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