CF418040
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: DXS_SYNJA (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain JA-3-3Ab) GN=dxs PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.921e-13 Identity = 53/188 (28.19%), Postives = 95/188 (50.53%), Query Frame = 3 Query: 6 GAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMA 566 G H Y A+ +P + +++P + + ++ I+ + + G P++ E + +PIGKA++ R G +V I A+ +V SL+AAEIL + GIS V+N R +PLD I +++ +VTVEEG G G+ + ++++ + P+ R+ DV + +A E +A Sbjct: 433 GPTHQGMYDIAYLRCIPEMVLMAPKDEAELQRMVVTGIQYTKGPIAMRYPRGAGVGVPLAEEGWEP---IPIGKAEVLRSGGEVLILAYGSMVHPSLQAAEILKEHGISTTVVNARFAKPLDTELILPLAQQSRLVVTVEEGCLMGGFGSAVGEALLDAD---IRVPLLRLGVPDVWVEHATPEESLA 614
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: DXS_CYAA5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cyanothece sp. (strain ATCC 51142) GN=dxs PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.921e-13 Identity = 53/202 (26.24%), Postives = 95/202 (47.03%), Query Frame = 3 Query: 6 GAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMA-----VPQVEDIVR 593 G H Y A+ +P L +++P + + ++ I D + + G P+ E + + IGK +I R G DV + + +V SL+ AEIL + GI A V+N R ++PLD I ++ ++VT+EEG G G+ + ++++ + P++R D + +A E A PQ+ + +R Sbjct: 428 GPTHQGLYDIAYLRCIPNLTIMAPKDEAELQRMVVTGINHTDGPIAMRYPRGSGVGVPLMEEGWEP---VSIGKGEILRNGDDVLLVGYGTMVHQSLQVAEILKEHGIEATVVNARFVKPLDTELIVPLAQRIGKVVTLEEGCLMGGFGSAVAEALLDHD---VVVPIKRFGVPDKLVDHAKPDESKADLGLTSPQIAEEIR 623
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: DXS_SYNS3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain CC9311) GN=dxs PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 6.507e-13 Identity = 53/175 (30.29%), Postives = 85/175 (48.57%), Query Frame = 3 Query: 6 GAQHSHCYAAWYA-SVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGAD 527 G H Y Y ++P V++P + + +L + P L GE P+ E ++ LPIG ++ REG DV I A+ +V ++ A+ LA G+ VIN R +RPLD + I+ ++ ++VT+EEG G G+ + S+ E+ L P+ RI D Sbjct: 428 GPTHQGQYDISYMRAIPNFTVMAPKDEAELQRMLVTCLNHDGPTA-LRIPRGPGEGVPLMEEGWEA---LPIGCGEVVREGNDVLIVAYGAMVPKAMATAKCLAAVGVEVAVINARYLRPLDEALIHPMAKQIGKIVTMEEGALAGGFGSAVLESLQEKG---LAIPMLRIGIPD 595
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: DXS_GEOTN (1-deoxy-D-xylulose-5-phosphate synthase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=dxs PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 6.507e-13 Identity = 43/165 (26.06%), Postives = 83/165 (50.30%), Query Frame = 3 Query: 33 AWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGAD 527 A+ VP L ++ P + + ++ A+R D + + G P+ E+ + +PIG ++ R+G D I F + ++L+AAE LA++G+S +V+N R ++P+D + ++ + ++T+EE Q G G+ + Y A +ER+ D Sbjct: 435 AFLRHVPNLVLMMPKDENEGQHMVYTALRYDDGPIAMRFPRGNGLGVPLDEELKE----IPIGTWEVLRDGSDAVILTFGTTISMALEAAEQLARDGVSVKVVNARFLKPMDEAMLHELLESRLPILTIEEAVLQGGFGSSVLE--FAHDHGYHQAVIERMGIPD 593
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: DXS_GEOKA (1-deoxy-D-xylulose-5-phosphate synthase OS=Geobacillus kaustophilus GN=dxs PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 6.507e-13 Identity = 47/165 (28.48%), Postives = 83/165 (50.30%), Query Frame = 3 Query: 33 AWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGAD 527 A+ VP L ++ P + + ++ AIR D + + G P+ E+ + +PIG ++ R+G D I F + ++LKAA+ LAK+GIS +V+N R ++P+D + ++ + ++TVEE Q G G+ + Y A +ER+ D Sbjct: 433 AFLRHVPNLVLMMPKDENEGQHMVYTAIRYDDGPIAMRFPRGNGLGVPLDEELKE----IPIGTWEVLRDGCDAAILTFGTTISMALKAADELAKDGISVKVVNARFLKPMDVAMLHELLESRLPILTVEEAVLQGGFGSAVLE--FAHDHGYHGAVIERMGIPD 591
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: DXS_TRIEI (1-deoxy-D-xylulose-5-phosphate synthase OS=Trichodesmium erythraeum (strain IMS101) GN=dxs PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.110e-12 Identity = 47/181 (25.97%), Postives = 92/181 (50.83%), Query Frame = 3 Query: 6 GAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYA 545 G H Y A+ +P + V++P + + ++ I+ D + + G P+ E ++ + IGK +I R G DV I + +V +++ AEIL++ G++A V+N R ++PLD I ++ ++VT+EEG G G+ + ++++ + + PV R+ D + +A Sbjct: 428 GPTHQGMYDIAYLRCIPNMVVMAPKDEGELQRMVLTGIKHTDGAIAMRYPRGNGYGVPLMEEGWEA---ITIGKGEILRNGDDVLILGYGSMVYSAMQTAEILSEHGVAATVVNARFVKPLDTELILPLAQRIGQVVTMEEGCLMGGFGSAVTEALMDNN---VLVPVLRLGVPDKLVDHA 602
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: DXS_CYAP8 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cyanothece sp. (strain PCC 8801) GN=dxs PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.110e-12 Identity = 47/162 (29.01%), Postives = 79/162 (48.77%), Query Frame = 3 Query: 6 GAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFS 488 G H Y A+ +P + +++P + + ++ + D + + G P+ E + LPIGK +I R G D+ I + +V +L+AAE L + GI A V+N R ++PLD I ++ ++VT+EEG G G S + E+FS Sbjct: 428 GPTHQGMYDIAYLRCIPNMTIMAPKDEAELQRMIVTGVNYTDGPIAMRYPRGNGIGVPLMEEGWEP---LPIGKGEILRNGDDLLILGYGTMVNTALQAAETLREHGIEATVVNARFVKPLDTELILPLAQRIGKVVTLEEGCLMGGFG-----SAVAEAFS 581
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: DXS_PROM3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Prochlorococcus marinus (strain MIT 9303) GN=dxs PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12 Identity = 56/211 (26.54%), Postives = 101/211 (47.87%), Query Frame = 3 Query: 6 GAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAA---NLERMAVPQVEDIVRAAXRACYRSVP 626 G H Y +++ ++P V++P + + +L ++ P L GE P+ E + L IG+ ++ EG D+ I A+ +V ++ A++L + G+ A VIN R +RPLD++ I+ R+ R+VT+EEG G GA + S+ ++ + P RI D + +A+ + E + + + R C S P Sbjct: 428 GPTHQGQYDISYFRAIPNFTVMAPKDEAELQRMLVTCLQHQGPAA-LRIPRGSGEGVPLLDEGWEP---LAIGRGEVLCEGDDLLIVAYGVMVPAAMITAQLLQEAGVKATVINARFLRPLDQALIHPLARRIGRVVTMEEGALAGGFGAAVVESLSDQD---VLVPTFRIGIPDQLVDHASPQQSREALGLTPTQMSERIQEHFCLNSQP 631
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: DXS_DESPS (1-deoxy-D-xylulose-5-phosphate synthase OS=Desulfotalea psychrophila GN=dxs PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12 Identity = 46/145 (31.72%), Postives = 76/145 (52.41%), Query Frame = 3 Query: 48 VPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEES 482 +P L +++P + + +L A P + GE S E+ +S L IG+ ++ REG D+ + V +++AAE LAK+GISA VIN R I+PLD I +KT R++T+E+ G G+ + + ++S Sbjct: 449 IPNLTIMAPKDEAELQQMLVTATGHDGPTA-IRYPRGAGEDVSTSQEI-ESIPILEIGRGELLREGDDILLLPIGNRVYPAMRAAEELAKQGISASVINPRFIKPLDAELICQQAKKTGRIITIEDNTLCSGFGSAVLELLSQKS 591
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: DXS_SYNP6 (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=dxs PE=3 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 2.472e-12 Identity = 56/182 (30.77%), Postives = 89/182 (48.90%), Query Frame = 3 Query: 6 GAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAA 548 G H Y A+ +P + +++P + + +L I P+ + G P+ E +S LPIGKA+ R+G D+ + A+ +V +L+ AE+L + GISA VIN R +PLD I R+ ++VT EEG G G+ I S+ L PV I D+ + +A+ Sbjct: 428 GPTHQGMYDIAYLRLIPNMVLMAPKDEAELQRMLVTGIEYDGPIA-MRFPRGNGIGVPLPEEGWES---LPIGKAEQLRQGDDLLMLAYGSMVYPALQTAELLNEHGISATVINARFAKPLDEELIVPLARQIGKVVTFEEGCLPGGFGSAIMESLQAHD---LQVPVLPIGVPDLLVEHAS 602 The following BLAST results are available for this feature:
BLAST of CF418040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 128
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF418040 ID=CF418040; Name=CF418040; organism=Citrus sinensis; type=EST; length=680bpback to top |