CF418040

Overview
NameCF418040
Unique NameCF418040
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11173 contig Csv1_Contig11173:585..1264. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: DXS_SYNJA (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain JA-3-3Ab) GN=dxs PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.921e-13
Identity = 53/188 (28.19%), Postives = 95/188 (50.53%), Query Frame = 3
Query:    6 GAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMA 566
            G  H   Y  A+   +P + +++P    + + ++   I+     + +      G   P++ E  +    +PIGKA++ R G +V I A+  +V  SL+AAEIL + GIS  V+N R  +PLD   I    +++  +VTVEEG    G G+ +  ++++     +  P+ R+   DV + +A   E +A
Sbjct:  433 GPTHQGMYDIAYLRCIPEMVLMAPKDEAELQRMVVTGIQYTKGPIAMRYPRGAGVGVPLAEEGWEP---IPIGKAEVLRSGGEVLILAYGSMVHPSLQAAEILKEHGISTTVVNARFAKPLDTELILPLAQQSRLVVTVEEGCLMGGFGSAVGEALLDAD---IRVPLLRLGVPDVWVEHATPEESLA 614          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: DXS_CYAA5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cyanothece sp. (strain ATCC 51142) GN=dxs PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.921e-13
Identity = 53/202 (26.24%), Postives = 95/202 (47.03%), Query Frame = 3
Query:    6 GAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMA-----VPQVEDIVR 593
            G  H   Y  A+   +P L +++P    + + ++   I   D  + +      G   P+  E  +    + IGK +I R G DV +  +  +V  SL+ AEIL + GI A V+N R ++PLD   I    ++  ++VT+EEG    G G+ +  ++++     +  P++R    D  + +A   E  A      PQ+ + +R
Sbjct:  428 GPTHQGLYDIAYLRCIPNLTIMAPKDEAELQRMVVTGINHTDGPIAMRYPRGSGVGVPLMEEGWEP---VSIGKGEILRNGDDVLLVGYGTMVHQSLQVAEILKEHGIEATVVNARFVKPLDTELIVPLAQRIGKVVTLEEGCLMGGFGSAVAEALLDHD---VVVPIKRFGVPDKLVDHAKPDESKADLGLTSPQIAEEIR 623          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: DXS_SYNS3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain CC9311) GN=dxs PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.507e-13
Identity = 53/175 (30.29%), Postives = 85/175 (48.57%), Query Frame = 3
Query:    6 GAQHSHCYAAWYA-SVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGAD 527
            G  H   Y   Y  ++P   V++P    + + +L   +    P   L      GE  P+  E  ++   LPIG  ++ REG DV I A+  +V  ++  A+ LA  G+   VIN R +RPLD + I+   ++  ++VT+EEG    G G+ +  S+ E+    L  P+ RI   D
Sbjct:  428 GPTHQGQYDISYMRAIPNFTVMAPKDEAELQRMLVTCLNHDGPTA-LRIPRGPGEGVPLMEEGWEA---LPIGCGEVVREGNDVLIVAYGAMVPKAMATAKCLAAVGVEVAVINARYLRPLDEALIHPMAKQIGKIVTMEEGALAGGFGSAVLESLQEKG---LAIPMLRIGIPD 595          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: DXS_GEOTN (1-deoxy-D-xylulose-5-phosphate synthase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=dxs PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.507e-13
Identity = 43/165 (26.06%), Postives = 83/165 (50.30%), Query Frame = 3
Query:   33 AWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGAD 527
            A+   VP L ++ P    + + ++  A+R  D  + +      G   P+  E+ +    +PIG  ++ R+G D  I  F   + ++L+AAE LA++G+S +V+N R ++P+D + ++  +     ++T+EE   Q G G+ +          Y  A +ER+   D
Sbjct:  435 AFLRHVPNLVLMMPKDENEGQHMVYTALRYDDGPIAMRFPRGNGLGVPLDEELKE----IPIGTWEVLRDGSDAVILTFGTTISMALEAAEQLARDGVSVKVVNARFLKPMDEAMLHELLESRLPILTIEEAVLQGGFGSSVLE--FAHDHGYHQAVIERMGIPD 593          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: DXS_GEOKA (1-deoxy-D-xylulose-5-phosphate synthase OS=Geobacillus kaustophilus GN=dxs PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.507e-13
Identity = 47/165 (28.48%), Postives = 83/165 (50.30%), Query Frame = 3
Query:   33 AWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGAD 527
            A+   VP L ++ P    + + ++  AIR  D  + +      G   P+  E+ +    +PIG  ++ R+G D  I  F   + ++LKAA+ LAK+GIS +V+N R ++P+D + ++  +     ++TVEE   Q G G+ +          Y  A +ER+   D
Sbjct:  433 AFLRHVPNLVLMMPKDENEGQHMVYTAIRYDDGPIAMRFPRGNGLGVPLDEELKE----IPIGTWEVLRDGCDAAILTFGTTISMALKAADELAKDGISVKVVNARFLKPMDVAMLHELLESRLPILTVEEAVLQGGFGSAVLE--FAHDHGYHGAVIERMGIPD 591          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: DXS_TRIEI (1-deoxy-D-xylulose-5-phosphate synthase OS=Trichodesmium erythraeum (strain IMS101) GN=dxs PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.110e-12
Identity = 47/181 (25.97%), Postives = 92/181 (50.83%), Query Frame = 3
Query:    6 GAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYA 545
            G  H   Y  A+   +P + V++P    + + ++   I+  D  + +      G   P+  E  ++   + IGK +I R G DV I  +  +V  +++ AEIL++ G++A V+N R ++PLD   I    ++  ++VT+EEG    G G+ +  ++++ +   +  PV R+   D  + +A
Sbjct:  428 GPTHQGMYDIAYLRCIPNMVVMAPKDEGELQRMVLTGIKHTDGAIAMRYPRGNGYGVPLMEEGWEA---ITIGKGEILRNGDDVLILGYGSMVYSAMQTAEILSEHGVAATVVNARFVKPLDTELILPLAQRIGQVVTMEEGCLMGGFGSAVTEALMDNN---VLVPVLRLGVPDKLVDHA 602          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: DXS_CYAP8 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cyanothece sp. (strain PCC 8801) GN=dxs PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.110e-12
Identity = 47/162 (29.01%), Postives = 79/162 (48.77%), Query Frame = 3
Query:    6 GAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFS 488
            G  H   Y  A+   +P + +++P    + + ++   +   D  + +      G   P+  E  +    LPIGK +I R G D+ I  +  +V  +L+AAE L + GI A V+N R ++PLD   I    ++  ++VT+EEG    G G     S + E+FS
Sbjct:  428 GPTHQGMYDIAYLRCIPNMTIMAPKDEAELQRMIVTGVNYTDGPIAMRYPRGNGIGVPLMEEGWEP---LPIGKGEILRNGDDLLILGYGTMVNTALQAAETLREHGIEATVVNARFVKPLDTELILPLAQRIGKVVTLEEGCLMGGFG-----SAVAEAFS 581          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: DXS_PROM3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Prochlorococcus marinus (strain MIT 9303) GN=dxs PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12
Identity = 56/211 (26.54%), Postives = 101/211 (47.87%), Query Frame = 3
Query:    6 GAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAA---NLERMAVPQVEDIVRAAXRACYRSVP 626
            G  H   Y  +++ ++P   V++P    + + +L   ++   P   L      GE  P+  E  +    L IG+ ++  EG D+ I A+  +V  ++  A++L + G+ A VIN R +RPLD++ I+   R+  R+VT+EEG    G GA +  S+ ++    +  P  RI   D  + +A+   + E + +   +   R     C  S P
Sbjct:  428 GPTHQGQYDISYFRAIPNFTVMAPKDEAELQRMLVTCLQHQGPAA-LRIPRGSGEGVPLLDEGWEP---LAIGRGEVLCEGDDLLIVAYGVMVPAAMITAQLLQEAGVKATVINARFLRPLDQALIHPLARRIGRVVTMEEGALAGGFGAAVVESLSDQD---VLVPTFRIGIPDQLVDHASPQQSREALGLTPTQMSERIQEHFCLNSQP 631          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: DXS_DESPS (1-deoxy-D-xylulose-5-phosphate synthase OS=Desulfotalea psychrophila GN=dxs PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12
Identity = 46/145 (31.72%), Postives = 76/145 (52.41%), Query Frame = 3
Query:   48 VPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEES 482
            +P L +++P    + + +L  A     P   +      GE    S E+ +S   L IG+ ++ REG D+ +      V  +++AAE LAK+GISA VIN R I+PLD   I    +KT R++T+E+     G G+ +   + ++S
Sbjct:  449 IPNLTIMAPKDEAELQQMLVTATGHDGPTA-IRYPRGAGEDVSTSQEI-ESIPILEIGRGELLREGDDILLLPIGNRVYPAMRAAEELAKQGISASVINPRFIKPLDAELICQQAKKTGRIITIEDNTLCSGFGSAVLELLSQKS 591          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: DXS_SYNP6 (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=dxs PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.472e-12
Identity = 56/182 (30.77%), Postives = 89/182 (48.90%), Query Frame = 3
Query:    6 GAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAA 548
            G  H   Y  A+   +P + +++P    + + +L   I    P+  +      G   P+  E  +S   LPIGKA+  R+G D+ + A+  +V  +L+ AE+L + GISA VIN R  +PLD   I    R+  ++VT EEG    G G+ I  S+       L  PV  I   D+ + +A+
Sbjct:  428 GPTHQGMYDIAYLRLIPNMVLMAPKDEAELQRMLVTGIEYDGPIA-MRFPRGNGIGVPLPEEGWES---LPIGKAEQLRQGDDLLMLAYGSMVYPALQTAELLNEHGISATVINARFAKPLDEELIVPLARQIGKVVTFEEGCLPGGFGSAIMESLQAHD---LQVPVLPIGVPDLLVEHAS 602          
The following BLAST results are available for this feature:
BLAST of CF418040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
DXS_SYNJA2.921e-1328.191-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_CYAA52.921e-1326.241-deoxy-D-xylulose-5-phosphate synthase OS=Cyanoth... [more]
DXS_SYNS36.507e-1330.291-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_GEOTN6.507e-1326.061-deoxy-D-xylulose-5-phosphate synthase OS=Geobaci... [more]
DXS_GEOKA6.507e-1328.481-deoxy-D-xylulose-5-phosphate synthase OS=Geobaci... [more]
DXS_TRIEI1.110e-1225.971-deoxy-D-xylulose-5-phosphate synthase OS=Trichod... [more]
DXS_CYAP81.110e-1229.011-deoxy-D-xylulose-5-phosphate synthase OS=Cyanoth... [more]
DXS_PROM31.450e-1226.541-deoxy-D-xylulose-5-phosphate synthase OS=Prochlo... [more]
DXS_DESPS1.450e-1231.721-deoxy-D-xylulose-5-phosphate synthase OS=Desulfo... [more]
DXS_SYNP62.472e-1230.771-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-970 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-012_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF418040 ID=CF418040; Name=CF418040; organism=Citrus sinensis; type=EST; length=680bp
GAGTGGGTGCCCAACACTCTCACTGTTATGCAGCATGGTATGCCTCAGTC
CCTGGGTTGAAAGTACTGAGCCCATACAGTTCTGAAGATGCTCGTGGACT
GCTAAAAGCTGCTATAAGGGATCCGGATCCTGTTGTTTTTCTTGAAAATG
AGTTGTTATATGGTGAGTCATTCCCGGTATCAGCTGAAGTTCTTGATTCC
AGTTTTTGCCTTCCAATTGGGAAAGCTAAAATTGAGAGAGAAGGAAAGGA
TGTAACCATTACAGCTTTCTCAAAAATTGTGGGCCTTTCACTCAAGGCGG
CTGAGATACTTGCAAAGGAAGGAATAAGTGCTGAGGTTATCAATCTGCGG
TCAATTAGGCCACTAGATAGATCCACAATCAATGCTTCTGTCAGAAAAAC
TAACAGACTGGTAACAGTTGAAGAAGGGTTCCCTCAGCATGGAGTTGGTG
CCGAAATCTGTGCATCCGTTATTGAGGAAAGCTTCAGTTATCTTGATGCA
CCAGTTGAGAGAATTGCTGGAGCTGATGTTCCAATGCCATATGCAGCCAA
TCTTGAGAGAATGGCTGTCCCACAGGTTGAAGATATTGTCCGAGCTGCCN
AGAGAGCATGCTACAGATCTGTGCCNATGGCTGCTGCAGCATAAAAGAAC
TGATTCTGCCCTGAAGCTTTGTCAGATCCT
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