CF418040

Overview
NameCF418040
Unique NameCF418040
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: DXS_SYNE7 (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus elongatus (strain PCC 7942) GN=dxs PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.472e-12
Identity = 56/182 (30.77%), Postives = 89/182 (48.90%), Query Frame = 3
Query:    6 GAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAA 548
            G  H   Y  A+   +P + +++P    + + +L   I    P+  +      G   P+  E  +S   LPIGKA+  R+G D+ + A+  +V  +L+ AE+L + GISA VIN R  +PLD   I    R+  ++VT EEG    G G+ I  S+       L  PV  I   D+ + +A+
Sbjct:  428 GPTHQGMYDIAYLRLIPNMVLMAPKDEAELQRMLVTGIEYDGPIA-MRFPRGNGIGVPLPEEGWES---LPIGKAEQLRQGDDLLMLAYGSMVYPALQTAELLNEHGISATVINARFAKPLDEELIVPLARQIGKVVTFEEGCLPGGFGSAIMESLQAHD---LQVPVLPIGVPDLLVEHAS 602          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: DXS_PROM4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Prochlorococcus marinus (strain MIT 9211) GN=dxs PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.229e-12
Identity = 56/184 (30.43%), Postives = 91/184 (49.46%), Query Frame = 3
Query:    6 GAQHSHCYAAWYA-SVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLD--APVERIAGADVPMPYAA 548
            G  H   Y   Y  SVP   V++P    + + +L   + +  P   L      GE   +  E  +    L IG+ +I  +G D+ I A+  +V  +++ AE+L + GIS+ V+N R +RPLD++ I+   R+  ++VT+EEG    G G     S + ESFS  D   P  R+   D  + +A+
Sbjct:  428 GPTHQGQYDISYLRSVPNFTVMAPKDEAELQRMLVTCLENDGPCA-LRIPRGSGEGVTLMEEGWEP---LKIGRGEILEDGDDLLILAYGSMVTPAVQTAELLKQAGISSTVVNARFLRPLDQALIHPLARRIGKVVTIEEGALGGGFG-----SAVVESFSDQDLLVPTFRLGIPDKLVDHAS 602          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: DXS_PELCD (1-deoxy-D-xylulose-5-phosphate synthase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=dxs PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.229e-12
Identity = 42/147 (28.57%), Postives = 75/147 (51.02%), Query Frame = 3
Query:   48 VPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFS 488
            +P + V++P    + +  +    +   P+ +      Y     +  E+ DS   +PIGK +  R+G D  I A   +   +L A++ILA EG+S  V++ R ++PLD+  + A  R+T  +VTVEE   Q G G+ +   + +E  +
Sbjct:  440 IPNMVVIAPRDEIELQRAMLTGTQHDGPLAYR-----YPRGKALGLELPDSVESMPIGKGEKLRDGSDAVIFALGVVCKEALVASDILAGEGLSVAVVDPRFLKPLDQQLLIAEARRTGVVVTVEENVRQGGFGSAVLEMLADEGLA 581          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: DXS_SYNY3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechocystis sp. (strain PCC 6803) GN=dxs PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.217e-12
Identity = 47/181 (25.97%), Postives = 89/181 (49.17%), Query Frame = 3
Query:    6 GAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYA 545
            G  H   Y  A+   +P L +++P    + + +L   +      + +      G   P+  E  +    L IGKA+I R G DV +  +  +V  +L+ AE+L + GI A V+N R ++PLD   I     +  ++VT+EEG    G G+ +  ++++ +   +  P++R+   D+ + +A
Sbjct:  428 GPTHQGMYDIAYLRCIPNLVLMAPKDEAELQQMLVTGVNYTGGAIAMRYPRGNGIGVPLMEEGWEP---LEIGKAEILRSGDDVLLLGYGSMVYPALQTAELLHEHGIEATVVNARFVKPLDTELILPLAERIGKVVTMEEGCLMGGFGSAVAEALMDNN---VLVPLKRLGVPDILVDHA 602          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: DXS_ANADF (1-deoxy-D-xylulose-5-phosphate synthase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=dxs PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.217e-12
Identity = 53/164 (32.32%), Postives = 77/164 (46.95%), Query Frame = 3
Query:    6 GAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAE---VLDSSFCLPIGKAKIERE--GK-DVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE 476
            G  H   +  A+   VP L V++P    + R +L  A+    P  F          FP  A     L++   LPIGK ++ R   GK DV + A    +  +L AAE LAK+G++A V++ R  +PLD   I     +   +VT+EEG    G GA  C  + E
Sbjct:  425 GKTHQGAFDVAYLRCVPNLVVMAPSDENELRHMLHTALHHDGPAAF---------RFPRGAGEGVALEAPQVLPIGKGRLARAVPGKPDVCVVALGTTLHAALAAAEALAKDGVAASVVDARFAKPLDEELIAGEAERARCVVTIEEGCLPGGFGA-ACLELFE 578          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: DXS2_GEOMG (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=dxs2 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.217e-12
Identity = 50/160 (31.25%), Postives = 79/160 (49.38%), Query Frame = 3
Query:   48 VPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGAD 527
            +P + +++P    + + +LK AI    PV  L      G   P+   +      L IG+ ++  EG DV I A    V  + +AA++L   GI A V+N R ++PLDR  I  + R+T  +VTVEE   Q G G+ +   + +E  +  D   +RI   D
Sbjct:  441 LPEMTLMAPKDENELQHMLKTAIYAGRPVA-LRYPRGAGYGLPLDQTIQS----LEIGRGELLTEGDDVAIVAIGSTVYPAQEAAKLLEARGIRATVVNARFVKPLDRELILGAARRTGCIVTVEENALQGGFGSAVLELLADEGMT--DVRAKRIGIPD 593          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: DXS_SYNPW (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain WH7803) GN=dxs PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12
Identity = 43/158 (27.22%), Postives = 82/158 (51.90%), Query Frame = 3
Query:    6 GAQHSHCYAAWYA-SVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE 476
            G  H   Y   Y  ++P   V++P    + + +L ++++   P   +      GE  P+  E  +    LPIG+ ++ R+G D+ I A+  +   +L  A++LA  G+ + V+N R +RPLD   ++   R+  ++VT+EEG    G G+ +  S+++
Sbjct:  428 GPTHQGQYDISYLRAIPNFTVMAPKDEAELQRMLVSSLQHSGPCA-IRIPRGPGEGVPLMEEGWEP---LPIGRGEVLRDGDDLLIVAYGAMNSKALATADLLASCGVQSTVVNARFLRPLDDELLHPLARRIGKVVTIEEGTLAGGFGSALTESLLD 581          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: DXS_PROMP (1-deoxy-D-xylulose-5-phosphate synthase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=dxs PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12
Identity = 56/183 (30.60%), Postives = 90/183 (49.18%), Query Frame = 3
Query:    6 GAQHSHCYAAWYA-SVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSF-CLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAA 548
            G  H   Y   Y  ++P   +++P    + + +L  +I    P       +  G    V+  V+D  +  L IG+ +I  EG DV I A+  +V  + + A +L   GISA +IN R +RPLD+  I   VRK  ++VT+EEG    G G+ I   + +     ++ PV RI   DV + +A+
Sbjct:  428 GPTHQGQYDISYMRAIPNFVLMAPKDEAELQRMLITSINYKGPTAL---RIPRGSGLGVA--VMDEGWEPLKIGEGEILEEGDDVLIIAYGSMVQSATETANLLKNRGISACIINARFVRPLDQDLIIPLVRKLKKVVTMEEGTLVGGFGSAIVEMLNDND---INIPVLRIGIPDVLVDHAS 602          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: DXS_ACAM1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Acaryochloris marina (strain MBIC 11017) GN=dxs PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12
Identity = 49/182 (26.92%), Postives = 90/182 (49.45%), Query Frame = 3
Query:    6 GAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSF-CLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYA 545
            G  H   Y  A+   +P + +++P    + + +L   I   D  + +     Y     +   +++  +  LPIGKA+  R G DV + A+  +V L+ + A++L + G+ A V+N R  +PLD   I    +K  ++VT+EEG    G G+ +  ++++     + APV RI   D  + +A
Sbjct:  427 GPTHQGMYDIAYLRCLPNMVMMAPKDEAELQQMLVTGINYTDGPIAMR----YPRGSGLGVGLMEEGWEPLPIGKAETLRHGDDVLLLAYGTMVNLASQVADMLTEHGVRATVVNARFAKPLDTELIIPLAQKIGQVVTLEEGCLPGGFGSAVLEALMDHQ---VMAPVTRIGVPDQLVEHA 601          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: DXS_GEOSW (1-deoxy-D-xylulose-5-phosphate synthase OS=Geobacillus sp. (strain WCH70) GN=dxs PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.194e-12
Identity = 41/142 (28.87%), Postives = 74/142 (52.11%), Query Frame = 3
Query:   33 AWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 458
            A+   VP L ++ P    + + ++  AI+  D  + L      G    +  E+      +PIG  ++ REG+D+ I  F   + ++L+AAE LAK+ IS +V+N R I+P+D   ++  +     ++T+EE   Q G G+ +
Sbjct:  435 AFLRHVPNLVIMMPKDENEGQHMVYTAIQYDDGPIALRFPRGNGLGVKLDEELKK----IPIGTWEVLREGRDLAILTFGTTISMALEAAEKLAKDNISVKVVNARFIKPMDEKILHDLLESNIPILTIEEAVLQGGFGSAV 572          
The following BLAST results are available for this feature:
BLAST of CF418040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
DXS_SYNE72.472e-1230.771-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_PROM43.229e-1230.431-deoxy-D-xylulose-5-phosphate synthase OS=Prochlo... [more]
DXS_PELCD3.229e-1228.571-deoxy-D-xylulose-5-phosphate synthase OS=Pelobac... [more]
DXS_SYNY34.217e-1225.971-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_ANADF4.217e-1232.321-deoxy-D-xylulose-5-phosphate synthase OS=Anaerom... [more]
DXS2_GEOMG4.217e-1231.251-deoxy-D-xylulose-5-phosphate synthase 2 OS=Geoba... [more]
DXS_SYNPW5.508e-1227.221-deoxy-D-xylulose-5-phosphate synthase OS=Synecho... [more]
DXS_PROMP5.508e-1230.601-deoxy-D-xylulose-5-phosphate synthase OS=Prochlo... [more]
DXS_ACAM15.508e-1226.921-deoxy-D-xylulose-5-phosphate synthase OS=Acaryoc... [more]
DXS_GEOSW7.194e-1228.871-deoxy-D-xylulose-5-phosphate synthase OS=Geobaci... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-970 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-012_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF418040 ID=CF418040; Name=CF418040; organism=Citrus sinensis; type=EST; length=680bp
GAGTGGGTGCCCAACACTCTCACTGTTATGCAGCATGGTATGCCTCAGTC
CCTGGGTTGAAAGTACTGAGCCCATACAGTTCTGAAGATGCTCGTGGACT
GCTAAAAGCTGCTATAAGGGATCCGGATCCTGTTGTTTTTCTTGAAAATG
AGTTGTTATATGGTGAGTCATTCCCGGTATCAGCTGAAGTTCTTGATTCC
AGTTTTTGCCTTCCAATTGGGAAAGCTAAAATTGAGAGAGAAGGAAAGGA
TGTAACCATTACAGCTTTCTCAAAAATTGTGGGCCTTTCACTCAAGGCGG
CTGAGATACTTGCAAAGGAAGGAATAAGTGCTGAGGTTATCAATCTGCGG
TCAATTAGGCCACTAGATAGATCCACAATCAATGCTTCTGTCAGAAAAAC
TAACAGACTGGTAACAGTTGAAGAAGGGTTCCCTCAGCATGGAGTTGGTG
CCGAAATCTGTGCATCCGTTATTGAGGAAAGCTTCAGTTATCTTGATGCA
CCAGTTGAGAGAATTGCTGGAGCTGATGTTCCAATGCCATATGCAGCCAA
TCTTGAGAGAATGGCTGTCCCACAGGTTGAAGATATTGTCCGAGCTGCCN
AGAGAGCATGCTACAGATCTGTGCCNATGGCTGCTGCAGCATAAAAGAAC
TGATTCTGCCCTGAAGCTTTGTCAGATCCT
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