CF418040
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: DXS_SYNE7 (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus elongatus (strain PCC 7942) GN=dxs PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.472e-12 Identity = 56/182 (30.77%), Postives = 89/182 (48.90%), Query Frame = 3 Query: 6 GAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAA 548 G H Y A+ +P + +++P + + +L I P+ + G P+ E +S LPIGKA+ R+G D+ + A+ +V +L+ AE+L + GISA VIN R +PLD I R+ ++VT EEG G G+ I S+ L PV I D+ + +A+ Sbjct: 428 GPTHQGMYDIAYLRLIPNMVLMAPKDEAELQRMLVTGIEYDGPIA-MRFPRGNGIGVPLPEEGWES---LPIGKAEQLRQGDDLLMLAYGSMVYPALQTAELLNEHGISATVINARFAKPLDEELIVPLARQIGKVVTFEEGCLPGGFGSAIMESLQAHD---LQVPVLPIGVPDLLVEHAS 602
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: DXS_PROM4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Prochlorococcus marinus (strain MIT 9211) GN=dxs PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.229e-12 Identity = 56/184 (30.43%), Postives = 91/184 (49.46%), Query Frame = 3 Query: 6 GAQHSHCYAAWYA-SVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLD--APVERIAGADVPMPYAA 548 G H Y Y SVP V++P + + +L + + P L GE + E + L IG+ +I +G D+ I A+ +V +++ AE+L + GIS+ V+N R +RPLD++ I+ R+ ++VT+EEG G G S + ESFS D P R+ D + +A+ Sbjct: 428 GPTHQGQYDISYLRSVPNFTVMAPKDEAELQRMLVTCLENDGPCA-LRIPRGSGEGVTLMEEGWEP---LKIGRGEILEDGDDLLILAYGSMVTPAVQTAELLKQAGISSTVVNARFLRPLDQALIHPLARRIGKVVTIEEGALGGGFG-----SAVVESFSDQDLLVPTFRLGIPDKLVDHAS 602
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: DXS_PELCD (1-deoxy-D-xylulose-5-phosphate synthase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=dxs PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.229e-12 Identity = 42/147 (28.57%), Postives = 75/147 (51.02%), Query Frame = 3 Query: 48 VPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFS 488 +P + V++P + + + + P+ + Y + E+ DS +PIGK + R+G D I A + +L A++ILA EG+S V++ R ++PLD+ + A R+T +VTVEE Q G G+ + + +E + Sbjct: 440 IPNMVVIAPRDEIELQRAMLTGTQHDGPLAYR-----YPRGKALGLELPDSVESMPIGKGEKLRDGSDAVIFALGVVCKEALVASDILAGEGLSVAVVDPRFLKPLDQQLLIAEARRTGVVVTVEENVRQGGFGSAVLEMLADEGLA 581
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: DXS_SYNY3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechocystis sp. (strain PCC 6803) GN=dxs PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.217e-12 Identity = 47/181 (25.97%), Postives = 89/181 (49.17%), Query Frame = 3 Query: 6 GAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYA 545 G H Y A+ +P L +++P + + +L + + + G P+ E + L IGKA+I R G DV + + +V +L+ AE+L + GI A V+N R ++PLD I + ++VT+EEG G G+ + ++++ + + P++R+ D+ + +A Sbjct: 428 GPTHQGMYDIAYLRCIPNLVLMAPKDEAELQQMLVTGVNYTGGAIAMRYPRGNGIGVPLMEEGWEP---LEIGKAEILRSGDDVLLLGYGSMVYPALQTAELLHEHGIEATVVNARFVKPLDTELILPLAERIGKVVTMEEGCLMGGFGSAVAEALMDNN---VLVPLKRLGVPDILVDHA 602
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: DXS_ANADF (1-deoxy-D-xylulose-5-phosphate synthase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=dxs PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.217e-12 Identity = 53/164 (32.32%), Postives = 77/164 (46.95%), Query Frame = 3 Query: 6 GAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAE---VLDSSFCLPIGKAKIERE--GK-DVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE 476 G H + A+ VP L V++P + R +L A+ P F FP A L++ LPIGK ++ R GK DV + A + +L AAE LAK+G++A V++ R +PLD I + +VT+EEG G GA C + E Sbjct: 425 GKTHQGAFDVAYLRCVPNLVVMAPSDENELRHMLHTALHHDGPAAF---------RFPRGAGEGVALEAPQVLPIGKGRLARAVPGKPDVCVVALGTTLHAALAAAEALAKDGVAASVVDARFAKPLDEELIAGEAERARCVVTIEEGCLPGGFGA-ACLELFE 578
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: DXS2_GEOMG (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=dxs2 PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.217e-12 Identity = 50/160 (31.25%), Postives = 79/160 (49.38%), Query Frame = 3 Query: 48 VPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGAD 527 +P + +++P + + +LK AI PV L G P+ + L IG+ ++ EG DV I A V + +AA++L GI A V+N R ++PLDR I + R+T +VTVEE Q G G+ + + +E + D +RI D Sbjct: 441 LPEMTLMAPKDENELQHMLKTAIYAGRPVA-LRYPRGAGYGLPLDQTIQS----LEIGRGELLTEGDDVAIVAIGSTVYPAQEAAKLLEARGIRATVVNARFVKPLDRELILGAARRTGCIVTVEENALQGGFGSAVLELLADEGMT--DVRAKRIGIPD 593
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: DXS_SYNPW (1-deoxy-D-xylulose-5-phosphate synthase OS=Synechococcus sp. (strain WH7803) GN=dxs PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12 Identity = 43/158 (27.22%), Postives = 82/158 (51.90%), Query Frame = 3 Query: 6 GAQHSHCYAAWYA-SVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE 476 G H Y Y ++P V++P + + +L ++++ P + GE P+ E + LPIG+ ++ R+G D+ I A+ + +L A++LA G+ + V+N R +RPLD ++ R+ ++VT+EEG G G+ + S+++ Sbjct: 428 GPTHQGQYDISYLRAIPNFTVMAPKDEAELQRMLVSSLQHSGPCA-IRIPRGPGEGVPLMEEGWEP---LPIGRGEVLRDGDDLLIVAYGAMNSKALATADLLASCGVQSTVVNARFLRPLDDELLHPLARRIGKVVTIEEGTLAGGFGSALTESLLD 581
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: DXS_PROMP (1-deoxy-D-xylulose-5-phosphate synthase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=dxs PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12 Identity = 56/183 (30.60%), Postives = 90/183 (49.18%), Query Frame = 3 Query: 6 GAQHSHCYAAWYA-SVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSF-CLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAA 548 G H Y Y ++P +++P + + +L +I P + G V+ V+D + L IG+ +I EG DV I A+ +V + + A +L GISA +IN R +RPLD+ I VRK ++VT+EEG G G+ I + + ++ PV RI DV + +A+ Sbjct: 428 GPTHQGQYDISYMRAIPNFVLMAPKDEAELQRMLITSINYKGPTAL---RIPRGSGLGVA--VMDEGWEPLKIGEGEILEEGDDVLIIAYGSMVQSATETANLLKNRGISACIINARFVRPLDQDLIIPLVRKLKKVVTMEEGTLVGGFGSAIVEMLNDND---INIPVLRIGIPDVLVDHAS 602
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: DXS_ACAM1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Acaryochloris marina (strain MBIC 11017) GN=dxs PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12 Identity = 49/182 (26.92%), Postives = 90/182 (49.45%), Query Frame = 3 Query: 6 GAQHSHCY-AAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSF-CLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYA 545 G H Y A+ +P + +++P + + +L I D + + Y + +++ + LPIGKA+ R G DV + A+ +V L+ + A++L + G+ A V+N R +PLD I +K ++VT+EEG G G+ + ++++ + APV RI D + +A Sbjct: 427 GPTHQGMYDIAYLRCLPNMVMMAPKDEAELQQMLVTGINYTDGPIAMR----YPRGSGLGVGLMEEGWEPLPIGKAETLRHGDDVLLLAYGTMVNLASQVADMLTEHGVRATVVNARFAKPLDTELIIPLAQKIGQVVTLEEGCLPGGFGSAVLEALMDHQ---VMAPVTRIGVPDQLVEHA 601
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: DXS_GEOSW (1-deoxy-D-xylulose-5-phosphate synthase OS=Geobacillus sp. (strain WCH70) GN=dxs PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.194e-12 Identity = 41/142 (28.87%), Postives = 74/142 (52.11%), Query Frame = 3 Query: 33 AWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEI 458 A+ VP L ++ P + + ++ AI+ D + L G + E+ +PIG ++ REG+D+ I F + ++L+AAE LAK+ IS +V+N R I+P+D ++ + ++T+EE Q G G+ + Sbjct: 435 AFLRHVPNLVIMMPKDENEGQHMVYTAIQYDDGPIALRFPRGNGLGVKLDEELKK----IPIGTWEVLREGRDLAILTFGTTISMALEAAEKLAKDNISVKVVNARFIKPMDEKILHDLLESNIPILTIEEAVLQGGFGSAV 572 The following BLAST results are available for this feature:
BLAST of CF418040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 128
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Sequences
The
following sequences are available for this feature:
EST sequence >CF418040 ID=CF418040; Name=CF418040; organism=Citrus sinensis; type=EST; length=680bpback to top |