CF503803

Overview
NameCF503803
Unique NameCF503803
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length295
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig642 contig Csv1_Contig642:147..441. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH4_STRCA (Alcohol dehydrogenase 4 OS=Struthio camelus GN=ADH4 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.533e-22
Identity = 45/80 (56.25%), Postives = 62/80 (77.50%), Query Frame = 2
Query:   56 STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            +TEG+VI CKAA+AWE  KPL +E+++V+PP+  EVR+KI+ T +C TD +  +    EG+FP ILGHE AGIVES+G+G
Sbjct:    1 TTEGKVIKCKAAIAWEAGKPLSVEEIEVSPPKDHEVRVKIVATGVCRTDEHAINPSFKEGVFPVILGHEGAGIVESIGQG 80          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH1_APTAU (Alcohol dehydrogenase 1 OS=Apteryx australis GN=ADH1 PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 1.245e-21
Identity = 52/81 (64.20%), Postives = 61/81 (75.31%), Query Frame = 2
Query:   53 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            MST G+VI CKAAV WEP KP  IE+V+VAPP+A EVRIKIL T +C +D +  +G      FP ILGHEAAG+VESVGEG
Sbjct:    1 MSTAGKVIKCKAAVLWEPKKPFSIEEVEVAPPKAHEVRIKILATGICRSDDHVITGALVRP-FPIILGHEAAGVVESVGEG 80          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH6_PONAB (Alcohol dehydrogenase 6 OS=Pongo abelii GN=ADH6 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.774e-21
Identity = 48/81 (59.26%), Postives = 59/81 (72.84%), Query Frame = 2
Query:   53 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            MST GQVI CKAA+ W+P  P  IE+V+VAPP+A EVRIK++ T LC T+      K  + L+P ILGHE AGIVES+GEG
Sbjct:    1 MSTTGQVIRCKAAILWKPGAPFSIEEVEVAPPKAKEVRIKVVATGLCGTEMKVLGSKHLDLLYPTILGHEGAGIVESIGEG 81          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: FRMA_SYNY3 (S-(hydroxymethyl)glutathione dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=frmA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.623e-21
Identity = 47/71 (66.20%), Postives = 55/71 (77.46%), Query Frame = 2
Query:   83 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            +AAVA+E  KPL I ++ VAPPQ GEV +KI  T +CHTDA+T SG DPEGLFP +LGHE AGIV  VGEG
Sbjct:    4 RAAVAFEVGKPLQIVEIDVAPPQQGEVLVKITHTGVCHTDAFTLSGDDPEGLFPVVLGHEGAGIVVEVGEG 74          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH1_NAJNA (Alcohol dehydrogenase 1 OS=Naja naja PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.731e-21
Identity = 51/80 (63.75%), Postives = 61/80 (76.25%), Query Frame = 2
Query:   56 STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            ST G+VI CKAA+AWE NKPL IE ++VAPP+A EVRIKIL T +C +D +  SG     L P +LGHEAAG+VESVGEG
Sbjct:    1 STAGKVIKCKAAIAWELNKPLSIEQIEVAPPKAHEVRIKILATGVCRSDEHVISGAFRMPL-PMVLGHEAAGVVESVGEG 79          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH1_RAT (Alcohol dehydrogenase 1 OS=Rattus norvegicus GN=Adh1 PE=1 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 6.179e-21
Identity = 49/81 (60.49%), Postives = 61/81 (75.31%), Query Frame = 2
Query:   53 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            MST G+VI CKAAV WEP+KP  IED++VAPP+A EVRIK++ T +C +D +  SG     L P +LGHE AGIVES+GEG
Sbjct:    1 MSTAGKVIKCKAAVLWEPHKPFTIEDIEVAPPKAHEVRIKMVATGVCRSDDHAVSGSLFTPL-PAVLGHEGAGIVESIGEG 80          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH6_HUMAN (Alcohol dehydrogenase 6 OS=Homo sapiens GN=ADH6 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.054e-20
Identity = 47/81 (58.02%), Postives = 58/81 (71.60%), Query Frame = 2
Query:   53 MSTEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            M T GQVI CKAA+ W+P  P  IE+V+VAPP+A EVRIK++ T LC T+      K  + L+P ILGHE AGIVES+GEG
Sbjct:    1 MCTTGQVIRCKAAILWKPGAPFSIEEVEVAPPKAKEVRIKVVATGLCGTEMKVLGSKHLDLLYPTILGHEGAGIVESIGEG 81          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: ADH1_STRCA (Alcohol dehydrogenase 1 OS=Struthio camelus GN=ADH1 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.054e-20
Identity = 50/80 (62.50%), Postives = 60/80 (75.00%), Query Frame = 2
Query:   56 STEGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            ST G+VI CKAAV WEP KP  IE+V+VAPP+A EVR+KI+ T +C +D +  SG      FP ILGHEAAG+VESVGEG
Sbjct:    1 STAGKVIKCKAAVLWEPKKPFSIEEVEVAPPKAHEVRVKIIATGICRSDDHVISGVLVMP-FPIILGHEAAGVVESVGEG 79          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: FRMA_SHISS (S-(hydroxymethyl)glutathione dehydrogenase OS=Shigella sonnei (strain Ss046) GN=frmA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.377e-20
Identity = 44/71 (61.97%), Postives = 55/71 (77.46%), Query Frame = 2
Query:   83 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            +AAVA+ P KPL I ++ VAPP+ GEV IK+  T +CHTDA+T SG DPEG+FP +LGHE AG+V  VGEG
Sbjct:    4 RAAVAFAPGKPLEIVEIDVAPPKKGEVLIKVTHTGVCHTDAFTLSGDDPEGVFPVVLGHEGAGVVVEVGEG 74          
BLAST of CF503803 vs. ExPASy Swiss-Prot
Match: FRMA_ECOUT (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.377e-20
Identity = 44/71 (61.97%), Postives = 55/71 (77.46%), Query Frame = 2
Query:   83 KAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILFTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEG 295
            +AAVA+ P KPL I ++ VAPP+ GEV IK+  T +CHTDA+T SG DPEG+FP +LGHE AG+V  VGEG
Sbjct:    4 RAAVAFAPGKPLEIVEIDVAPPKKGEVLIKVTHTGVCHTDAFTLSGDDPEGVFPVVLGHEGAGVVVEVGEG 74          
The following BLAST results are available for this feature:
BLAST of CF503803 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
ADH4_STRCA9.533e-2256.25Alcohol dehydrogenase 4 OS=Struthio camelus GN=ADH... [more]
ADH1_APTAU1.245e-2164.20Alcohol dehydrogenase 1 OS=Apteryx australis GN=AD... [more]
ADH6_PONAB2.774e-2159.26Alcohol dehydrogenase 6 OS=Pongo abelii GN=ADH6 PE... [more]
FRMA_SYNY33.623e-2166.20S-(hydroxymethyl)glutathione dehydrogenase OS=Syne... [more]
ADH1_NAJNA4.731e-2163.75Alcohol dehydrogenase 1 OS=Naja naja PE=1 SV=1[more]
ADH1_RAT6.179e-2160.49Alcohol dehydrogenase 1 OS=Rattus norvegicus GN=Ad... [more]
ADH6_HUMAN1.054e-2058.02Alcohol dehydrogenase 6 OS=Homo sapiens GN=ADH6 PE... [more]
ADH1_STRCA1.054e-2062.50Alcohol dehydrogenase 1 OS=Struthio camelus GN=ADH... [more]
FRMA_SHISS1.377e-2061.97S-(hydroxymethyl)glutathione dehydrogenase OS=Shig... [more]
FRMA_ECOUT1.377e-2061.97S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-289 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_A02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503803 ID=CF503803; Name=CF503803; organism=Citrus sinensis; type=EST; length=295bp
CTCGTTTCTTTTTGTGGTCTGTTTTTCATTCTCATTTTCATTGTCAGCAG
CCATGTCTACTGAAGGTCAAGTCATCACATGCAAAGCGGCGGTGGCCTGG
GAACCCAACAAGCCATTGGTGATTGAGGATGTGCAGGTTGCTCCGCCTCA
GGCTGGCGAGGTCCGAATCAAGATTCTCTTCACTGCTCTCTGCCACACTG
ATGCTTACACCTGGAGCGGCAAGGATCCTGAAGGTCTCTTCCCTTGTATC
CTAGGTCATGAGGCTGCTGGGATTGTGGAGAGTGTTGGTGAAGGT
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