CF503806

Overview
NameCF503806
Unique NameCF503806
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length272
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503806 vs. ExPASy Swiss-Prot
Match: DNAK_LACF3 (Chaperone protein dnaK OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=dnaK PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.482e-30
Identity = 61/90 (67.78%), Postives = 79/90 (87.78%), Query Frame = 2
Query:    2 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHG 271
            DAG IAGL+V RIINEPTA+++AYGLDKK  ++ ILV+DLGGGTFDVSIL + +GVF+VLSTNGDTHLGG+DFDQ++M++ I   K+++G
Sbjct:  133 DAGKIAGLDVKRIINEPTASSLAYGLDKKDRDEKILVYDLGGGTFDVSILELGDGVFQVLSTNGDTHLGGDDFDQKIMDWLIDGFKQENG 222          
BLAST of CF503806 vs. ExPASy Swiss-Prot
Match: DNAK_DESAH (Chaperone protein dnaK OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=dnaK PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.482e-30
Identity = 66/90 (73.33%), Postives = 74/90 (82.22%), Query Frame = 2
Query:    2 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHG 271
            DAG IAGL V RIINEPTAA++AYGLDKKG EK I+VFDLGGGTFDVS+L I +GVFEV STNGDTHLGGEDFD R+++Y     KK  G
Sbjct:  156 DAGKIAGLTVKRIINEPTAASLAYGLDKKGEEK-IVVFDLGGGTFDVSVLEIGDGVFEVKSTNGDTHLGGEDFDLRIIDYIADEFKKSQG 244          
BLAST of CF503806 vs. ExPASy Swiss-Prot
Match: DNAK_CLOTH (Chaperone protein dnaK OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=dnaK PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.482e-30
Identity = 65/90 (72.22%), Postives = 77/90 (85.56%), Query Frame = 2
Query:    2 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHG 271
            DAG IAGL V RIINEPTAAA+AYGLDK+  +K ILVFDLGGGTFDVSIL I +GVFEVL+T+G+  LGG+DFDQR+++Y I L KK+HG
Sbjct:  132 DAGRIAGLEVLRIINEPTAAALAYGLDKESDQK-ILVFDLGGGTFDVSILEIGDGVFEVLATSGNNRLGGDDFDQRIIDYLIDLFKKEHG 220          
BLAST of CF503806 vs. ExPASy Swiss-Prot
Match: DNAK1_PHOPR (Chaperone protein dnaK 1 OS=Photobacterium profundum GN=dnaK1 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.482e-30
Identity = 64/94 (68.09%), Postives = 75/94 (79.79%), Query Frame = 2
Query:    2 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTID----NGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHG 271
            DAG IAGL V RIINEPTAAA+AYGLDKKGG++ I V+DLGGGTFD+SI+ ID       FEVLSTNGDTHLGGEDFD R++ Y ++  KK+ G
Sbjct:  156 DAGRIAGLEVKRIINEPTAAALAYGLDKKGGDRTIAVYDLGGGTFDISIIEIDEVEGEKTFEVLSTNGDTHLGGEDFDNRLINYLVEEFKKEQG 249          
BLAST of CF503806 vs. ExPASy Swiss-Prot
Match: HSP77_HUMAN (Putative heat shock 70 kDa protein 7 OS=Homo sapiens GN=HSPA7 PE=5 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 3.241e-30
Identity = 62/91 (68.13%), Postives = 78/91 (85.71%), Query Frame = 2
Query:    2 DAGIIAGLNVARIINEPTAAAIAYGLDKKG-GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHG 271
            DAG IAGL V  IINE TAAAIAYGLD++G G++N+L+FDLGGGTFDVS+L+ID GVFEV +T GDTHLGGEDFD R++ +F++  ++KHG
Sbjct:  162 DAGAIAGLKVLPIINEATAAAIAYGLDRRGAGKRNVLIFDLGGGTFDVSVLSIDAGVFEVKATAGDTHLGGEDFDNRLVNHFMEEFRRKHG 252          
BLAST of CF503806 vs. ExPASy Swiss-Prot
Match: HSP74_PARLI (Heat shock 70 kDa protein IV OS=Paracentrotus lividus GN=HSP70IV PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.241e-30
Identity = 63/90 (70.00%), Postives = 77/90 (85.56%), Query Frame = 2
Query:    2 DAGIIAGLNVARIINEPTAAAIAYGLDKK-GGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKH 268
            DAG+IAG+NV RIINEPT AA+AYGLDKK  GEK++L+FDLGGGTFDVS+L ID+GVFEVL+T GDTHLGGEDFD R++ +     K+K+
Sbjct:  160 DAGVIAGINVLRIINEPTRAALAYGLDKKLTGEKHVLIFDLGGGTFDVSLLAIDDGVFEVLTTAGDTHLGGEDFDNRLVNHTSLEFKRKY 249          
BLAST of CF503806 vs. ExPASy Swiss-Prot
Match: HSP73_YEAST (Heat shock protein SSA3 OS=Saccharomyces cerevisiae GN=SSA3 PE=1 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 3.241e-30
Identity = 64/89 (71.91%), Postives = 74/89 (83.15%), Query Frame = 2
Query:    2 DAGIIAGLNVARIINEPTAAAIAYGLDKKG-GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKK 265
            DAG IAG+NV RIINEPTAAAIAYGLDKKG  E N+L+FDLGGGTFDVS+L+ID GVFEV +T GDTHLGGEDFD R++ +     K+K
Sbjct:  158 DAGTIAGMNVLRIINEPTAAAIAYGLDKKGRAEHNVLIFDLGGGTFDVSLLSIDEGVFEVKATAGDTHLGGEDFDNRLVNHLATEFKRK 246          
BLAST of CF503806 vs. ExPASy Swiss-Prot
Match: HSP70_BRUMA (Heat shock 70 kDa protein OS=Brugia malayi GN=HSP70 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.241e-30
Identity = 65/88 (73.86%), Postives = 77/88 (87.50%), Query Frame = 2
Query:    2 DAGIIAGLNVARIINEPTAAAIAYGLDKKG-GEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKK 262
            D+G IAGLNV RIINEPTAAAIAYGLDKKG GE+N+L+FDLGGGTFDVSILTI++G+FEV ST GDTHL GEDFD R++ +F+   K+
Sbjct:  160 DSGAIAGLNVLRIINEPTAAAIAYGLDKKGHGERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHL-GEDFDNRMVNHFVAEFKR 246          
BLAST of CF503806 vs. ExPASy Swiss-Prot
Match: DNAK_VIBFM (Chaperone protein dnaK OS=Vibrio fischeri (strain MJ11) GN=dnaK PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.241e-30
Identity = 63/94 (67.02%), Postives = 76/94 (80.85%), Query Frame = 2
Query:    2 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDN----GVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHG 271
            DAG IAGL+V RIINEPTAAA+AYGLDKKGG++ I V+DLGGGTFD+SI+ IDN      FEVL+TNGDTHLGGEDFD R++ Y +   +K+ G
Sbjct:  155 DAGRIAGLDVKRIINEPTAAALAYGLDKKGGDRTIAVYDLGGGTFDISIIEIDNVDGEQTFEVLATNGDTHLGGEDFDNRLINYLVSEFEKEQG 248          
BLAST of CF503806 vs. ExPASy Swiss-Prot
Match: DNAK_LACBA (Chaperone protein dnaK OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=dnaK PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 3.241e-30
Identity = 59/90 (65.56%), Postives = 79/90 (87.78%), Query Frame = 2
Query:    2 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHG 271
            DAG IAGL+V RIINEPTAAA+AYGLDK+  ++ +LV+DLGGGTFDVS+L + +GVF+VLSTNGDTHLGG+DFDQ++M++ +   K+++G
Sbjct:  133 DAGKIAGLSVERIINEPTAAALAYGLDKQDKDEKVLVYDLGGGTFDVSVLELGDGVFDVLSTNGDTHLGGDDFDQKIMDWLVAGFKEENG 222          
The following BLAST results are available for this feature:
BLAST of CF503806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_LACF32.482e-3067.78Chaperone protein dnaK OS=Lactobacillus fermentum ... [more]
DNAK_DESAH2.482e-3073.33Chaperone protein dnaK OS=Desulfobacterium autotro... [more]
DNAK_CLOTH2.482e-3072.22Chaperone protein dnaK OS=Clostridium thermocellum... [more]
DNAK1_PHOPR2.482e-3068.09Chaperone protein dnaK 1 OS=Photobacterium profund... [more]
HSP77_HUMAN3.241e-3068.13Putative heat shock 70 kDa protein 7 OS=Homo sapie... [more]
HSP74_PARLI3.241e-3070.00Heat shock 70 kDa protein IV OS=Paracentrotus livi... [more]
HSP73_YEAST3.241e-3071.91Heat shock protein SSA3 OS=Saccharomyces cerevisia... [more]
HSP70_BRUMA3.241e-3073.86Heat shock 70 kDa protein OS=Brugia malayi GN=HSP7... [more]
DNAK_VIBFM3.241e-3067.02Chaperone protein dnaK OS=Vibrio fischeri (strain ... [more]
DNAK_LACBA3.241e-3065.56Chaperone protein dnaK OS=Lactobacillus brevis (st... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-292 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503806 ID=CF503806; Name=CF503806; organism=Citrus sinensis; type=EST; length=272bp
GGATGCTGGTATTATTGCTGGGCTAAATGTTGCTAGGATTATCAATGAAC
CAACAGCCGCTGCCATTGCCTATGGATTGGACAAGAAAGGTGGTGAGAAG
AACATTCTTGTCTTTGACCTTGGTGGTGGTACATTTGATGTCAGTATCTT
GACAATTGACAATGGTGTTTTCGAGGTTCTTTCCACAAATGGAGACACTC
ATTTGGGAGGTGAGGACTTTGATCAGAGGGTTATGGAGTACTTTATTAAA
TTGATCAAGAAGAAGCATGGAA
back to top