CF503806

Overview
NameCF503806
Unique NameCF503806
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length272
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503806 vs. ExPASy Swiss-Prot
Match: DNAK_SHIBS (Chaperone protein dnaK OS=Shigella boydii serotype 4 (strain Sb227) GN=dnaK PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.826e-28
Identity = 61/94 (64.89%), Postives = 71/94 (75.53%), Query Frame = 2
Query:    2 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTID----NGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHG 271
            DAG IAGL V RIINEPTAAA+AYGLDK  G + I V+DLGGGTFD+SI+ ID       FEVL+TNGDTHLGGEDFD R++ Y ++  KK  G
Sbjct:  156 DAGRIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQG 249          
BLAST of CF503806 vs. ExPASy Swiss-Prot
Match: DNAK_SHESR (Chaperone protein dnaK OS=Shewanella sp. (strain MR-7) GN=dnaK PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.826e-28
Identity = 60/94 (63.83%), Postives = 72/94 (76.60%), Query Frame = 2
Query:    2 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNG----VFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHG 271
            DAG IAGL V RIINEPTAAA+AYG+DKK G+  + V+DLGGGTFD+SI+ ID+      FEVL+TNGDTHLGGEDFD R++ Y     KK+ G
Sbjct:  155 DAGRIAGLEVKRIINEPTAAALAYGIDKKQGDNIVAVYDLGGGTFDISIIEIDSNDGDQTFEVLATNGDTHLGGEDFDNRLINYLADEFKKEQG 248          
BLAST of CF503806 vs. ExPASy Swiss-Prot
Match: DNAK_SHESM (Chaperone protein dnaK OS=Shewanella sp. (strain MR-4) GN=dnaK PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.826e-28
Identity = 60/94 (63.83%), Postives = 72/94 (76.60%), Query Frame = 2
Query:    2 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNG----VFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHG 271
            DAG IAGL V RIINEPTAAA+AYG+DKK G+  + V+DLGGGTFD+SI+ ID+      FEVL+TNGDTHLGGEDFD R++ Y     KK+ G
Sbjct:  155 DAGRIAGLEVKRIINEPTAAALAYGIDKKQGDNIVAVYDLGGGTFDISIIEIDSNDGDQTFEVLATNGDTHLGGEDFDNRLINYLADEFKKEQG 248          
BLAST of CF503806 vs. ExPASy Swiss-Prot
Match: DNAK_SHESA (Chaperone protein dnaK OS=Shewanella sp. (strain ANA-3) GN=dnaK PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.826e-28
Identity = 60/94 (63.83%), Postives = 72/94 (76.60%), Query Frame = 2
Query:    2 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNG----VFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHG 271
            DAG IAGL V RIINEPTAAA+AYG+DKK G+  + V+DLGGGTFD+SI+ ID+      FEVL+TNGDTHLGGEDFD R++ Y     KK+ G
Sbjct:  155 DAGRIAGLEVKRIINEPTAAALAYGIDKKQGDNIVAVYDLGGGTFDISIIEIDSNDGDQTFEVLATNGDTHLGGEDFDNRLINYLADEFKKEQG 248          
BLAST of CF503806 vs. ExPASy Swiss-Prot
Match: DNAK_SHEON (Chaperone protein dnaK OS=Shewanella oneidensis GN=dnaK PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.826e-28
Identity = 60/94 (63.83%), Postives = 72/94 (76.60%), Query Frame = 2
Query:    2 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNG----VFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHG 271
            DAG IAGL V RIINEPTAAA+AYG+DKK G+  + V+DLGGGTFD+SI+ ID+      FEVL+TNGDTHLGGEDFD R++ Y     KK+ G
Sbjct:  155 DAGRIAGLEVKRIINEPTAAALAYGIDKKQGDNIVAVYDLGGGTFDISIIEIDSNDGDQTFEVLATNGDTHLGGEDFDNRLINYLADEFKKEQG 248          
BLAST of CF503806 vs. ExPASy Swiss-Prot
Match: DNAK_PROMH (Chaperone protein dnaK OS=Proteus mirabilis (strain HI4320) GN=dnaK PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.826e-28
Identity = 60/94 (63.83%), Postives = 73/94 (77.66%), Query Frame = 2
Query:    2 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTID----NGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHG 271
            DAG IAGL+V RIINEPTAAA+AYGLD++ G + I V+DLGGGTFD+SI+ ID       +EVLSTNGDTHLGGEDFD R++ Y +   KK+ G
Sbjct:  156 DAGRIAGLDVKRIINEPTAAALAYGLDREVGNRTIAVYDLGGGTFDISIIEIDEVDGEKTYEVLSTNGDTHLGGEDFDSRLINYLVDEFKKEQG 249          
BLAST of CF503806 vs. ExPASy Swiss-Prot
Match: DNAK_METRJ (Chaperone protein dnaK OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=dnaK PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.826e-28
Identity = 64/90 (71.11%), Postives = 70/90 (77.78%), Query Frame = 2
Query:    2 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHG 271
            DAG IAGL V RIINEPTAAA+AYGLDKK     I V+DLGGGTFDVSIL I +GVFEV STNGDT LGGEDFD R++EY     KK+ G
Sbjct:  156 DAGKIAGLEVLRIINEPTAAALAYGLDKKKSG-TIAVYDLGGGTFDVSILEIGDGVFEVKSTNGDTFLGGEDFDNRIVEYLTAEFKKEQG 244          
BLAST of CF503806 vs. ExPASy Swiss-Prot
Match: DNAK_MANSM (Chaperone protein dnaK OS=Mannheimia succiniciproducens (strain MBEL55E) GN=dnaK PE=2 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 8.826e-28
Identity = 62/94 (65.96%), Postives = 71/94 (75.53%), Query Frame = 2
Query:    2 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTID----NGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHG 271
            DAG IAGL V RIINEPTAAA+AYGLDK  G + I V+DLGGGTFD+SI+ ID       FEVL+TNGDTHLGGEDFD RV+ Y +   KK+ G
Sbjct:  156 DAGRIAGLEVKRIINEPTAAALAYGLDKGKGNQTIAVYDLGGGTFDLSIIEIDEVGGEKTFEVLATNGDTHLGGEDFDNRVINYLVDEFKKEQG 249          
BLAST of CF503806 vs. ExPASy Swiss-Prot
Match: DNAK_MAGSM (Chaperone protein dnaK OS=Magnetococcus sp. (strain MC-1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.826e-28
Identity = 62/89 (69.66%), Postives = 71/89 (79.78%), Query Frame = 2
Query:    2 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKH 268
            DAG IAGL V RIINEPTAAA+AYGLDKK G+  I VFDLGGGTFD+SIL I +GVFEV STNGDT LGGEDFD  +++Y     KK++
Sbjct:  156 DAGRIAGLEVLRIINEPTAAALAYGLDKKDGQ-TIAVFDLGGGTFDISILEIGDGVFEVKSTNGDTFLGGEDFDMAIIDYLADQFKKEN 243          
BLAST of CF503806 vs. ExPASy Swiss-Prot
Match: DNAK_HAES2 (Chaperone protein dnaK OS=Haemophilus somnus (strain 2336) GN=dnaK PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.826e-28
Identity = 62/94 (65.96%), Postives = 71/94 (75.53%), Query Frame = 2
Query:    2 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTID----NGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHG 271
            DAG IAGL V RIINEPTAAA+AYGLDK  G + I V+DLGGGTFD+SI+ ID       FEVL+TNGDTHLGGEDFD RV+ Y +   KK+ G
Sbjct:  156 DAGRIAGLEVKRIINEPTAAALAYGLDKGKGNQTIAVYDLGGGTFDLSIIEIDEVGGEKTFEVLATNGDTHLGGEDFDNRVINYLVDEFKKEQG 249          
The following BLAST results are available for this feature:
BLAST of CF503806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_SHIBS8.826e-2864.89Chaperone protein dnaK OS=Shigella boydii serotype... [more]
DNAK_SHESR8.826e-2863.83Chaperone protein dnaK OS=Shewanella sp. (strain M... [more]
DNAK_SHESM8.826e-2863.83Chaperone protein dnaK OS=Shewanella sp. (strain M... [more]
DNAK_SHESA8.826e-2863.83Chaperone protein dnaK OS=Shewanella sp. (strain A... [more]
DNAK_SHEON8.826e-2863.83Chaperone protein dnaK OS=Shewanella oneidensis GN... [more]
DNAK_PROMH8.826e-2863.83Chaperone protein dnaK OS=Proteus mirabilis (strai... [more]
DNAK_METRJ8.826e-2871.11Chaperone protein dnaK OS=Methylobacterium radioto... [more]
DNAK_MANSM8.826e-2865.96Chaperone protein dnaK OS=Mannheimia succiniciprod... [more]
DNAK_MAGSM8.826e-2869.66Chaperone protein dnaK OS=Magnetococcus sp. (strai... [more]
DNAK_HAES28.826e-2865.96Chaperone protein dnaK OS=Haemophilus somnus (stra... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-292 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503806 ID=CF503806; Name=CF503806; organism=Citrus sinensis; type=EST; length=272bp
GGATGCTGGTATTATTGCTGGGCTAAATGTTGCTAGGATTATCAATGAAC
CAACAGCCGCTGCCATTGCCTATGGATTGGACAAGAAAGGTGGTGAGAAG
AACATTCTTGTCTTTGACCTTGGTGGTGGTACATTTGATGTCAGTATCTT
GACAATTGACAATGGTGTTTTCGAGGTTCTTTCCACAAATGGAGACACTC
ATTTGGGAGGTGAGGACTTTGATCAGAGGGTTATGGAGTACTTTATTAAA
TTGATCAAGAAGAAGCATGGAA
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