CF503806

Overview
NameCF503806
Unique NameCF503806
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length272
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF503806 vs. ExPASy Swiss-Prot
Match: DNAK_SALPA (Chaperone protein dnaK OS=Salmonella paratyphi A GN=dnaK PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.153e-27
Identity = 61/94 (64.89%), Postives = 71/94 (75.53%), Query Frame = 2 
Query:    2 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTID----NGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHG 271
            DAG IAGL V RIINEPTAAA+AYGLDK+ G + I V+DLGGGTFD+SI+ ID       FEVL+TNGDTHLGGEDFD R++ Y +   KK  G
Sbjct:  156 DAGRIAGLEVKRIINEPTAAALAYGLDKEVGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDTRLINYLVDEFKKDQG 249
[Close]
BLAST of CF503806 vs. ExPASy Swiss-Prot
Match: DNAK_SALNS (Chaperone protein dnaK OS=Salmonella newport (strain SL254) GN=dnaK PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.153e-27
Identity = 61/94 (64.89%), Postives = 71/94 (75.53%), Query Frame = 2 
Query:    2 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTID----NGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHG 271
            DAG IAGL V RIINEPTAAA+AYGLDK+ G + I V+DLGGGTFD+SI+ ID       FEVL+TNGDTHLGGEDFD R++ Y +   KK  G
Sbjct:  156 DAGRIAGLEVKRIINEPTAAALAYGLDKEVGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDTRLINYLVDEFKKDQG 249
[Close]
BLAST of CF503806 vs. ExPASy Swiss-Prot
Match: DNAK_SALHS (Chaperone protein dnaK OS=Salmonella heidelberg (strain SL476) GN=dnaK PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.153e-27
Identity = 61/94 (64.89%), Postives = 71/94 (75.53%), Query Frame = 2 
Query:    2 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTID----NGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHG 271
            DAG IAGL V RIINEPTAAA+AYGLDK+ G + I V+DLGGGTFD+SI+ ID       FEVL+TNGDTHLGGEDFD R++ Y +   KK  G
Sbjct:  156 DAGRIAGLEVKRIINEPTAAALAYGLDKEVGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDTRLINYLVDEFKKDQG 249
[Close]
BLAST of CF503806 vs. ExPASy Swiss-Prot
Match: DNAK_SALG2 (Chaperone protein dnaK OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=dnaK PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.153e-27
Identity = 61/94 (64.89%), Postives = 71/94 (75.53%), Query Frame = 2 
Query:    2 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTID----NGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHG 271
            DAG IAGL V RIINEPTAAA+AYGLDK+ G + I V+DLGGGTFD+SI+ ID       FEVL+TNGDTHLGGEDFD R++ Y +   KK  G
Sbjct:  156 DAGRIAGLEVKRIINEPTAAALAYGLDKEVGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDTRLINYLVDEFKKDQG 249
[Close]
BLAST of CF503806 vs. ExPASy Swiss-Prot
Match: DNAK_SALEP (Chaperone protein dnaK OS=Salmonella enteritidis PT4 (strain P125109) GN=dnaK PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.153e-27
Identity = 61/94 (64.89%), Postives = 71/94 (75.53%), Query Frame = 2 
Query:    2 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTID----NGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHG 271
            DAG IAGL V RIINEPTAAA+AYGLDK+ G + I V+DLGGGTFD+SI+ ID       FEVL+TNGDTHLGGEDFD R++ Y +   KK  G
Sbjct:  156 DAGRIAGLEVKRIINEPTAAALAYGLDKEVGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDTRLINYLVDEFKKDQG 249
[Close]
BLAST of CF503806 vs. ExPASy Swiss-Prot
Match: DNAK_SALDC (Chaperone protein dnaK OS=Salmonella dublin (strain CT_02021853) GN=dnaK PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.153e-27
Identity = 61/94 (64.89%), Postives = 71/94 (75.53%), Query Frame = 2 
Query:    2 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTID----NGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHG 271
            DAG IAGL V RIINEPTAAA+AYGLDK+ G + I V+DLGGGTFD+SI+ ID       FEVL+TNGDTHLGGEDFD R++ Y +   KK  G
Sbjct:  156 DAGRIAGLEVKRIINEPTAAALAYGLDKEVGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDTRLINYLVDEFKKDQG 249
[Close]
BLAST of CF503806 vs. ExPASy Swiss-Prot
Match: DNAK_SALCH (Chaperone protein dnaK OS=Salmonella choleraesuis GN=dnaK PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.153e-27
Identity = 61/94 (64.89%), Postives = 71/94 (75.53%), Query Frame = 2 
Query:    2 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTID----NGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHG 271
            DAG IAGL V RIINEPTAAA+AYGLDK+ G + I V+DLGGGTFD+SI+ ID       FEVL+TNGDTHLGGEDFD R++ Y +   KK  G
Sbjct:  156 DAGRIAGLEVKRIINEPTAAALAYGLDKEVGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDTRLINYLVDEFKKDQG 249
[Close]
BLAST of CF503806 vs. ExPASy Swiss-Prot
Match: DNAK_SALAR (Chaperone protein dnaK OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=dnaK PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.153e-27
Identity = 61/94 (64.89%), Postives = 71/94 (75.53%), Query Frame = 2 
Query:    2 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTID----NGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHG 271
            DAG IAGL V RIINEPTAAA+AYGLDK+ G + I V+DLGGGTFD+SI+ ID       FEVL+TNGDTHLGGEDFD R++ Y +   KK  G
Sbjct:  156 DAGRIAGLEVKRIINEPTAAALAYGLDKEVGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDTRLINYLVDEFKKDQG 249
[Close]
BLAST of CF503806 vs. ExPASy Swiss-Prot
Match: DNAK_SALA4 (Chaperone protein dnaK OS=Salmonella agona (strain SL483) GN=dnaK PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.153e-27
Identity = 61/94 (64.89%), Postives = 71/94 (75.53%), Query Frame = 2 
Query:    2 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTID----NGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHG 271
            DAG IAGL V RIINEPTAAA+AYGLDK+ G + I V+DLGGGTFD+SI+ ID       FEVL+TNGDTHLGGEDFD R++ Y +   KK  G
Sbjct:  156 DAGRIAGLEVKRIINEPTAAALAYGLDKEVGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDTRLINYLVDEFKKDQG 249
[Close]
BLAST of CF503806 vs. ExPASy Swiss-Prot
Match: DNAK_RUBXD (Chaperone protein dnaK OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=dnaK PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.153e-27
Identity = 60/90 (66.67%), Postives = 75/90 (83.33%), Query Frame = 2 
Query:    2 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHG 271
            DAG IAGLNV RIINEPTAAA+AYGLDK+  ++ ILVFDLGGGTFDVSIL + +GVFEV +T+G+ HLGG+DFD +V+E+ ++  KK  G
Sbjct:  155 DAGRIAGLNVKRIINEPTAAALAYGLDKEN-DQTILVFDLGGGTFDVSILELGDGVFEVKATSGNNHLGGDDFDAKVVEWIVEEFKKAEG 243
The following BLAST results are available for this feature:
BLAST of CF503806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_SALPA1.153e-2764.89Chaperone protein dnaK OS=Salmonella paratyphi A G... [more]
DNAK_SALNS1.153e-2764.89Chaperone protein dnaK OS=Salmonella newport (stra... [more]
DNAK_SALHS1.153e-2764.89Chaperone protein dnaK OS=Salmonella heidelberg (s... [more]
DNAK_SALG21.153e-2764.89Chaperone protein dnaK OS=Salmonella gallinarum (s... [more]
DNAK_SALEP1.153e-2764.89Chaperone protein dnaK OS=Salmonella enteritidis P... [more]
DNAK_SALDC1.153e-2764.89Chaperone protein dnaK OS=Salmonella dublin (strai... [more]
DNAK_SALCH1.153e-2764.89Chaperone protein dnaK OS=Salmonella choleraesuis ... [more]
DNAK_SALAR1.153e-2764.89Chaperone protein dnaK OS=Salmonella arizonae (str... [more]
DNAK_SALA41.153e-2764.89Chaperone protein dnaK OS=Salmonella agona (strain... [more]
DNAK_RUBXD1.153e-2766.67Chaperone protein dnaK OS=Rubrobacter xylanophilus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-292 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503806 ID=CF503806; Name=CF503806; organism=Citrus sinensis; type=EST; length=272bp
GGATGCTGGTATTATTGCTGGGCTAAATGTTGCTAGGATTATCAATGAAC
CAACAGCCGCTGCCATTGCCTATGGATTGGACAAGAAAGGTGGTGAGAAG
AACATTCTTGTCTTTGACCTTGGTGGTGGTACATTTGATGTCAGTATCTT
GACAATTGACAATGGTGTTTTCGAGGTTCTTTCCACAAATGGAGACACTC
ATTTGGGAGGTGAGGACTTTGATCAGAGGGTTATGGAGTACTTTATTAAA
TTGATCAAGAAGAAGCATGGAA
back to top