CF503806

Overview
NameCF503806
Unique NameCF503806
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length272
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503806 vs. ExPASy Swiss-Prot
Match: DNAK_RHORT (Chaperone protein dnaK OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=dnaK PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.506e-27
Identity = 62/90 (68.89%), Postives = 70/90 (77.78%), Query Frame = 2
Query:    2 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHG 271
            DAG IAGL V RIINEPTAAA+AYG+DKK     I VFDLGGGTFDVS+L I +GVFEV STNGDT LGGEDFD R+++Y     KK+ G
Sbjct:  156 DAGKIAGLEVLRIINEPTAAALAYGMDKKN-TGTIAVFDLGGGTFDVSVLEIGDGVFEVKSTNGDTFLGGEDFDARIIDYLASEFKKEQG 244          
BLAST of CF503806 vs. ExPASy Swiss-Prot
Match: DNAK_RHOMR (Chaperone protein dnaK OS=Rhodothermus marinus GN=dnaK PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.506e-27
Identity = 57/90 (63.33%), Postives = 73/90 (81.11%), Query Frame = 2
Query:    2 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHG 271
            +AG IAGL V RI+NEPTAAA+AYGLDKK  E  I V+DLGGGT+D+SIL + +GVFEV +TNGDTHLGG++FDQR+++Y     +K+ G
Sbjct:  158 EAGEIAGLKVRRILNEPTAAALAYGLDKKDKELKIAVYDLGGGTYDISILELGDGVFEVKATNGDTHLGGDNFDQRLIDYIADEFQKQEG 247          
BLAST of CF503806 vs. ExPASy Swiss-Prot
Match: DNAK_PSEHT (Chaperone protein dnaK OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=dnaK PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.506e-27
Identity = 61/94 (64.89%), Postives = 70/94 (74.47%), Query Frame = 2
Query:    2 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTID----NGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHG 271
            DAG IAGL V RIINEPTAAA+AYG+DK  GE  + V+DLGGGTFD+SI+ ID       FEVL+TNGDTHLGGEDFD RV+ Y +   KK  G
Sbjct:  156 DAGRIAGLEVKRIINEPTAAALAYGMDKNRGENIVAVYDLGGGTFDLSIIEIDEVEGEHTFEVLATNGDTHLGGEDFDNRVINYLVAEFKKDQG 249          
BLAST of CF503806 vs. ExPASy Swiss-Prot
Match: DNAK_PELPD (Chaperone protein dnaK OS=Pelobacter propionicus (strain DSM 2379) GN=dnaK PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.506e-27
Identity = 63/90 (70.00%), Postives = 71/90 (78.89%), Query Frame = 2
Query:    2 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHG 271
            DAG IAGLNV RIINEPTAAA+AYGLDKK  EK + VFDLGGGTFD+SIL + +GVFEV STNGDT LGGEDFDQ V+++      K  G
Sbjct:  156 DAGKIAGLNVLRIINEPTAAALAYGLDKKKEEK-VAVFDLGGGTFDISILELGDGVFEVKSTNGDTFLGGEDFDQLVIDWIADEFHKDQG 244          
BLAST of CF503806 vs. ExPASy Swiss-Prot
Match: DNAK_MYXXD (Chaperone protein dnaK OS=Myxococcus xanthus (strain DK 1622) GN=dnaK PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 1.506e-27
Identity = 61/85 (71.76%), Postives = 71/85 (83.53%), Query Frame = 2
Query:    2 DAGIIAGLNVARIINEPTAAAIAYGLDK--KGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIK 250
            DAG IAGL+V RIINEPTAAA+AYGLDK   GG + I V+DLGGGTFD+SIL ++ GVFEV STNGDT LGGEDFDQR+++Y  K
Sbjct:  156 DAGRIAGLSVLRIINEPTAAALAYGLDKVQDGGTERIAVYDLGGGTFDISILELNAGVFEVKSTNGDTFLGGEDFDQRLIDYLAK 240          
BLAST of CF503806 vs. ExPASy Swiss-Prot
Match: DNAK_METBF (Chaperone protein dnaK OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=dnaK PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.506e-27
Identity = 59/90 (65.56%), Postives = 72/90 (80.00%), Query Frame = 2
Query:    2 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHG 271
            DAG IAGL+V RIINEPT+A++AYGLDK   E+ ILV+DLGGGTFDVSIL +  GVFEV ST+GDT LGG+DFDQR++ Y +   +K  G
Sbjct:  133 DAGAIAGLDVLRIINEPTSASLAYGLDKGDIEQKILVYDLGGGTFDVSILELGGGVFEVKSTSGDTRLGGDDFDQRIVNYLLAEFRKIEG 222          
BLAST of CF503806 vs. ExPASy Swiss-Prot
Match: DNAK_GEOKA (Chaperone protein dnaK OS=Geobacillus kaustophilus GN=dnaK PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.506e-27
Identity = 59/90 (65.56%), Postives = 74/90 (82.22%), Query Frame = 2
Query:    2 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHG 271
            DAG IAGL V RIINEPTAAA+AYGLDK+  ++ ILV+DLGGGTFDVSIL + +GVFEV +T GD HLGG+DFDQ +++Y +   K++HG
Sbjct:  130 DAGRIAGLEVERIINEPTAAALAYGLDKEE-DQTILVYDLGGGTFDVSILELGDGVFEVKATAGDNHLGGDDFDQVIIDYLVNQFKQEHG 218          
BLAST of CF503806 vs. ExPASy Swiss-Prot
Match: DNAK_CLOTE (Chaperone protein dnaK OS=Clostridium tetani GN=dnaK PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.506e-27
Identity = 59/90 (65.56%), Postives = 72/90 (80.00%), Query Frame = 2
Query:    2 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHG 271
            DAG IAGL V RIINEPTAA++AYGLDK    + ILV+DLGGGTFDVSIL + +GVFEV STNG+T LGG+DFDQR++++  +  KK  G
Sbjct:  132 DAGRIAGLEVLRIINEPTAASLAYGLDKMDTNQKILVYDLGGGTFDVSILELGDGVFEVKSTNGNTKLGGDDFDQRIIDHIAETFKKDSG 221          
BLAST of CF503806 vs. ExPASy Swiss-Prot
Match: DNAK_CLOK5 (Chaperone protein dnaK OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=dnaK PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.506e-27
Identity = 57/90 (63.33%), Postives = 71/90 (78.89%), Query Frame = 2
Query:    2 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHG 271
            DAG IAGL V RIINEPTAAA+AYG+DK    + I V+DLGGGTFDVSIL + +GVFEV +TNGDTHLGG+DFD+++++Y     K  +G
Sbjct:  132 DAGKIAGLEVLRIINEPTAAALAYGMDKMDTNQKIFVYDLGGGTFDVSILELGDGVFEVKATNGDTHLGGDDFDKKIIDYIADTFKADNG 221          
BLAST of CF503806 vs. ExPASy Swiss-Prot
Match: DNAK_CLOK1 (Chaperone protein dnaK OS=Clostridium kluyveri (strain NBRC 12016) GN=dnaK PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.506e-27
Identity = 57/90 (63.33%), Postives = 71/90 (78.89%), Query Frame = 2
Query:    2 DAGIIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSILTIDNGVFEVLSTNGDTHLGGEDFDQRVMEYFIKLIKKKHG 271
            DAG IAGL V RIINEPTAAA+AYG+DK    + I V+DLGGGTFDVSIL + +GVFEV +TNGDTHLGG+DFD+++++Y     K  +G
Sbjct:  132 DAGKIAGLEVLRIINEPTAAALAYGMDKMDTNQKIFVYDLGGGTFDVSILELGDGVFEVKATNGDTHLGGDDFDKKIIDYIADTFKADNG 221          
The following BLAST results are available for this feature:
BLAST of CF503806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_RHORT1.506e-2768.89Chaperone protein dnaK OS=Rhodospirillum rubrum (s... [more]
DNAK_RHOMR1.506e-2763.33Chaperone protein dnaK OS=Rhodothermus marinus GN=... [more]
DNAK_PSEHT1.506e-2764.89Chaperone protein dnaK OS=Pseudoalteromonas halopl... [more]
DNAK_PELPD1.506e-2770.00Chaperone protein dnaK OS=Pelobacter propionicus (... [more]
DNAK_MYXXD1.506e-2771.76Chaperone protein dnaK OS=Myxococcus xanthus (stra... [more]
DNAK_METBF1.506e-2765.56Chaperone protein dnaK OS=Methanosarcina barkeri (... [more]
DNAK_GEOKA1.506e-2765.56Chaperone protein dnaK OS=Geobacillus kaustophilus... [more]
DNAK_CLOTE1.506e-2765.56Chaperone protein dnaK OS=Clostridium tetani GN=dn... [more]
DNAK_CLOK51.506e-2763.33Chaperone protein dnaK OS=Clostridium kluyveri (st... [more]
DNAK_CLOK11.506e-2763.33Chaperone protein dnaK OS=Clostridium kluyveri (st... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-292 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_A05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503806 ID=CF503806; Name=CF503806; organism=Citrus sinensis; type=EST; length=272bp
GGATGCTGGTATTATTGCTGGGCTAAATGTTGCTAGGATTATCAATGAAC
CAACAGCCGCTGCCATTGCCTATGGATTGGACAAGAAAGGTGGTGAGAAG
AACATTCTTGTCTTTGACCTTGGTGGTGGTACATTTGATGTCAGTATCTT
GACAATTGACAATGGTGTTTTCGAGGTTCTTTCCACAAATGGAGACACTC
ATTTGGGAGGTGAGGACTTTGATCAGAGGGTTATGGAGTACTTTATTAAA
TTGATCAAGAAGAAGCATGGAA
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