CF503815

Overview
NameCF503815
Unique NameCF503815
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length320
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig499 contig Csv1_Contig499:1..320. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503815 vs. ExPASy Swiss-Prot
Match: LOVHK_BRUO2 (Blue-light-activated histidine kinase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=BOV_A0554 PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 4.924e-15
Identity = 38/85 (44.71%), Postives = 52/85 (61.18%), Query Frame = 1
Query:   58 LLCLMPPKPDCPIMYASSGFFSMTGYSSKEVIGRNCRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPI 312
            +L   P  PD PI++A+  F  +TGY + EV+GRNCRFLQG  TD   V  I+ A+   K     ++NYKK G  FWN L ++P+
Sbjct:   34 MLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVCAIKSAIAAEKPIDIDIINYKKSGEAFWNRLHISPV 118          
BLAST of CF503815 vs. ExPASy Swiss-Prot
Match: WC1_NEUCR (White collar 1 protein OS=Neurospora crassa GN=wc-1 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.097e-14
Identity = 37/87 (42.53%), Postives = 51/87 (58.62%), Query Frame = 1
Query:   85 DCPIMYASSGFFSMTGYSSKEVIGRNCRFLQGPE-----------TDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPI 312
            DCPI+Y S  F ++TGYS  E++GRNCRFLQ P+            + N V  ++  +  G+     L+NY+K G PF NLLT+ PI
Sbjct:  402 DCPIIYVSDNFQNLTGYSRHEIVGRNCRFLQAPDGNVEAGTKREFVENNAVYTLKKTIAEGQEIQQSLINYRKGGKPFLNLLTMIPI 488          
BLAST of CF503815 vs. ExPASy Swiss-Prot
Match: ADO2_ARATH (Adagio protein 2 OS=Arabidopsis thaliana GN=ADO2 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.097e-14
Identity = 41/89 (46.07%), Postives = 57/89 (64.04%), Query Frame = 1
Query:   79 KPDCPIMYASSGFFSMTGYSSKEVIGRNCRFLQ--GPET-------DKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKD 318
            +PD PI+Y ++ F  +TGY ++EVIGRNCRFLQ  GP T       D   V K+R  + NG  + G LLN++KDG+P  N L + PI++
Sbjct:   54 EPDNPIIYVNTVFEIVTGYRAEEVIGRNCRFLQCRGPFTKRRHPMVDSTIVAKMRQCLENGIEFQGELLNFRKDGSPLMNKLRLVPIRE 142          
BLAST of CF503815 vs. ExPASy Swiss-Prot
Match: ADO2_ORYSJ (Putative adagio-like protein 2 OS=Oryza sativa subsp. japonica GN=Os02g0150800 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.584e-13
Identity = 39/87 (44.83%), Postives = 51/87 (58.62%), Query Frame = 1
Query:   79 KPDCPIMYASSGFFSMTGYSSKEVIGRNCRFLQ---------GPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPI 312
            +PD PI+Y + GF   TGY ++EV+GRNCRFLQ          P  D   V  IR  +  G  + G LLN++KDG+PF   L +TPI
Sbjct:   63 EPDFPIIYVNRGFEDATGYRAEEVLGRNCRFLQCRGPFAKRRHPLVDTTVVTDIRRCLEEGTVFQGDLLNFRKDGSPFMAKLQLTPI 149          
BLAST of CF503815 vs. ExPASy Swiss-Prot
Match: ADO3_ARATH (Adagio protein 3 OS=Arabidopsis thaliana GN=ADO3 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.020e-13
Identity = 38/89 (42.70%), Postives = 51/89 (57.30%), Query Frame = 1
Query:   79 KPDCPIMYASSGFFSMTGYSSKEVIGRNCRFLQ---------GPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKD 318
            +PD P++Y +  F   TGY + EV+GRNCRFLQ          P  D   V +IR  +  G  + G LLN++KDGTP  N L + PI+D
Sbjct:   63 EPDFPLIYVNRVFEVFTGYRADEVLGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFRKDGTPLVNRLRLAPIRD 151          
BLAST of CF503815 vs. ExPASy Swiss-Prot
Match: ADO1_ARATH (Adagio protein 1 OS=Arabidopsis thaliana GN=ADO1 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.027e-12
Identity = 37/87 (42.53%), Postives = 52/87 (59.77%), Query Frame = 1
Query:   79 KPDCPIMYASSGFFSMTGYSSKEVIGRNCRFLQ---------GPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPI 312
            +PD PI+Y ++ F  +TGY ++EV+G NCRFLQ          P  D   V +IR  +  G  + G LLN++KDG+P  N L +TPI
Sbjct:   54 EPDQPIIYVNTVFEMVTGYRAEEVLGGNCRFLQCRGPFAKRRHPLVDSMVVSEIRKCIDEGIEFQGELLNFRKDGSPLMNRLRLTPI 140          
BLAST of CF503815 vs. ExPASy Swiss-Prot
Match: BAT_HALSA (Putative bacterio-opsin activator OS=Halobacterium salinarium GN=bat PE=4 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.287e-12
Identity = 33/79 (41.77%), Postives = 50/79 (63.29%), Query Frame = 1
Query:   82 PDCPIMYASSGFFSMTGYSSKEVIGRNCRFLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKD 318
            P+ PI+Y +  F  +TGYS  EV+G N RFLQGP+T+++ V +   A+         L NY++DG+ FWN + ++PI D
Sbjct:  179 PEEPIIYINDSFEDITGYSPDEVVGANHRFLQGPKTNEDRVAEFWTAITEDHDTQVVLRNYRRDGSLFWNQVDISPIYD 257          
BLAST of CF503815 vs. ExPASy Swiss-Prot
Match: KCNH3_RAT (Potassium voltage-gated channel subfamily H member 3 OS=Rattus norvegicus GN=Kcnh3 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.692e-12
Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 1
Query:   91 PIMYASSGFFSMTGYSSKEVIGRNCR--FLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKD 318
            P++Y S GF  +TG+S  EV+ R C   FL GP+T +   ++IR A+   K +   L+ Y+K G PFW LL V PIK+
Sbjct:   41 PVVYCSDGFCDLTGFSRAEVMQRGCACSFLYGPDTSELVRQQIRKALDEHKEFKAELILYRKSGLPFWCLLDVIPIKN 118          
BLAST of CF503815 vs. ExPASy Swiss-Prot
Match: KCNH3_MOUSE (Potassium voltage-gated channel subfamily H member 3 OS=Mus musculus GN=Kcnh3 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.692e-12
Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 1
Query:   91 PIMYASSGFFSMTGYSSKEVIGRNCR--FLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKD 318
            P++Y S GF  +TG+S  EV+ R C   FL GP+T +   ++IR A+   K +   L+ Y+K G PFW LL V PIK+
Sbjct:   41 PVVYCSDGFCDLTGFSRAEVMQRGCACSFLYGPDTSELVRQQIRKALDEHKEFKAELILYRKSGLPFWCLLDVIPIKN 118          
BLAST of CF503815 vs. ExPASy Swiss-Prot
Match: KCNH3_HUMAN (Potassium voltage-gated channel subfamily H member 3 OS=Homo sapiens GN=KCNH3 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.692e-12
Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 1
Query:   91 PIMYASSGFFSMTGYSSKEVIGRNCR--FLQGPETDKNEVEKIRDAVRNGKSYCGRLLNYKKDGTPFWNLLTVTPIKD 318
            P++Y S GF  +TG+S  EV+ R C   FL GP+T +   ++IR A+   K +   L+ Y+K G PFW LL V PIK+
Sbjct:   41 PVVYCSDGFCDLTGFSRAEVMQRGCACSFLYGPDTSELVRQQIRKALDEHKEFKAELILYRKSGLPFWCLLDVIPIKN 118          
The following BLAST results are available for this feature:
BLAST of CF503815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
LOVHK_BRUO24.924e-1544.71Blue-light-activated histidine kinase OS=Brucella ... [more]
WC1_NEUCR1.097e-1442.53White collar 1 protein OS=Neurospora crassa GN=wc-... [more]
ADO2_ARATH1.097e-1446.07Adagio protein 2 OS=Arabidopsis thaliana GN=ADO2 P... [more]
ADO2_ORYSJ1.584e-1344.83Putative adagio-like protein 2 OS=Oryza sativa sub... [more]
ADO3_ARATH6.020e-1342.70Adagio protein 3 OS=Arabidopsis thaliana GN=ADO3 P... [more]
ADO1_ARATH1.027e-1242.53Adagio protein 1 OS=Arabidopsis thaliana GN=ADO1 P... [more]
BAT_HALSA2.287e-1241.77Putative bacterio-opsin activator OS=Halobacterium... [more]
KCNH3_RAT8.692e-1243.59Potassium voltage-gated channel subfamily H member... [more]
KCNH3_MOUSE8.692e-1243.59Potassium voltage-gated channel subfamily H member... [more]
KCNH3_HUMAN8.692e-1243.59Potassium voltage-gated channel subfamily H member... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-302 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_B03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503815 ID=CF503815; Name=CF503815; organism=Citrus sinensis; type=EST; length=320bp
CATTCCCAAGGGTTTCAGAGGAGTTGAAGGCTGCATTGGCAACATTGCAG
CAAACATTTGTTGTGTCTGATGCCACCTAAACCTGACTGCCCTATAATGT
ATGCCAGCAGTGGCTTTTTTAGCATGACTGGTTACTCTTCCAAGGAGGTC
ATTGGAAGGAATTGCCGGTTTCTTCAAGGGCCAGAAACAGACAAGAATGA
GGTGGAGAAAATACGAGATGCGGTGAGGAACGGGAAGAGTTACTGCGGCA
GGCTCTTGAACTACAAAAAAGATGGTACTCCTTTCTGGAATCTACTCACT
GTTACGCCTATCAAGGATGA
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