CF503816

Overview
NameCF503816
Unique NameCF503816
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length291
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3PT_MOUSE (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Mus musculus GN=Gapdhs PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.064e-16
Identity = 41/88 (46.59%), Postives = 64/88 (72.73%), Query Frame = 1
Query:   25 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWA 288
            ++ +GINGFGRIGRLV RV +++  + +VAVNDPFI  +YM YMFKYDS HG++K + ++ K+ + L+     +  +  ++P+EIPW+
Sbjct:  107 ELTVGINGFGRIGRLVLRVCMEKG-IRVVAVNDPFIDPEYMVYMFKYDSTHGRYKGN-VEHKNGQ-LVVDNLEINTYQCKDPKEIPWS 191          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3PT_MACFA (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Macaca fascicularis GN=GAPDHS PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.696e-16
Identity = 41/97 (42.27%), Postives = 66/97 (68.04%), Query Frame = 1
Query:    1 PRAARIMGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            P+      ++ +GINGFGRIGRLV R  +++  V++VAVNDPFI  +YM YMFKYDS HG++K   ++ ++ + L+     ++V+  + P++IPW +
Sbjct:   68 PKMGPAPRELTVGINGFGRIGRLVLRACMEKG-VKVVAVNDPFIDPEYMVYMFKYDSTHGRYK-GSVEFRNGQ-LVVDNHEISVYQCKEPKQIPWRD 161          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P_EMENI (Glyceraldehyde-3-phosphate dehydrogenase OS=Emericella nidulans GN=gpdA PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 3.521e-16
Identity = 42/87 (48.28%), Postives = 58/87 (66.67%), Query Frame = 1
Query:   31 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            K+GINGFGRIGR+V R  ++   V++VAVNDPFI T Y  YM KYDS HGQ+K   ++  D+  ++ G+K +     R+P  IPW +
Sbjct:    4 KVGINGFGRIGRIVFRNAIEAGTVDVVAVNDPFIETHYAAYMLKYDSQHGQFK-GTIETYDEGLIVNGKK-IRFHTERDPANIPWGQ 88          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3PC_SCEVA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Scenedesmus vacuolatus GN=GapC PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.521e-16
Identity = 42/84 (50.00%), Postives = 55/84 (65.48%), Query Frame = 1
Query:   43 NGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDK-TLLFGEKPVTVFGVRNPEEIPWAE 291
            NGFGRIG LV R  L R DV++VA+NDPFI  +YM YMFKYDSVHG+   +E  V+ DK  +    + +    + +P +IPW E
Sbjct:    1 NGFGRIGSLVLRATLDRKDVKVVAINDPFIEGEYMAYMFKYDSVHGR---YEGDVQGDKHGITINGEQIKTLAMMDPTQIPWGE 81          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P_TRIAT (Glyceraldehyde-3-phosphate dehydrogenase OS=Trichoderma atroviride GN=gpd1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.599e-16
Identity = 40/88 (45.45%), Postives = 59/88 (67.05%), Query Frame = 1
Query:   28 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            +K+GINGFGRIGR++    L++ ++ +VAVNDPFI   Y  YM KYDS HG +K  +++V D + L+   KP+  +  R+P  I W+E
Sbjct:    3 IKVGINGFGRIGRILLSNALEKPELSVVAVNDPFIEPTYAAYMLKYDSSHGLFK-GDIEV-DGQNLVVNGKPIRFYSERDPANIKWSE 88          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P2_SCHPO (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schizosaccharomyces pombe GN=gpd3 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.599e-16
Identity = 41/86 (47.67%), Postives = 57/86 (66.28%), Query Frame = 1
Query:   31 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWA 288
            K+GINGFGRIGR+V R  +    +++VAVNDPFI  DYM YMFKYDS HG+++   ++ K  K ++ G   + V   R+P  I W+
Sbjct:    5 KVGINGFGRIGRIVLRNAILTGKIQVVAVNDPFIDLDYMAYMFKYDSTHGRFE-GSVETKGGKLVIDGHS-IDVHNERDPANIKWS 88          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3PA_GUITH (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Guillardia theta GN=GAPC1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.006e-16
Identity = 43/101 (42.57%), Postives = 68/101 (67.33%), Query Frame = 1
Query:    1 PRAARIMGK----VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            P+AA++ G     V  GINGFGRIGRLVAR++++  + +L+ VN    T DYM Y FKYDS+HG+++  ++ V  D  ++ G++ +T    R+P++I WA+
Sbjct:   36 PKAAKMTGPTMQAVPCGINGFGRIGRLVARIMIKDPETKLLQVNAGSATPDYMAYQFKYDSIHGRYQ-GDVVVDGDDLVIDGQRVITT-RARDPKDIGWAK 134          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P_MYCPN (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoplasma pneumoniae GN=gapA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.844e-16
Identity = 40/88 (45.45%), Postives = 59/88 (67.05%), Query Frame = 1
Query:   28 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            +++ INGFGRIGRLV R +L + ++E+VAVND     D + ++ KYDS HG++K  +  V  D TL+  +K V VF  ++P  +PWAE
Sbjct:    8 IRVAINGFGRIGRLVFRALLSQKNIEIVAVND-LTHPDTLAHLLKYDSAHGEFK--KKVVAKDNTLMIDKKKVLVFSEKDPANLPWAE 92          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P_MASBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Mastigamoeba balamuthi GN=GAPD PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.024e-15
Identity = 45/92 (48.91%), Postives = 59/92 (64.13%), Query Frame = 1
Query:   31 KIGINGFGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMFKYDSVHGQW------KHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPW 285
            ++GINGFGRIGRLV RV+L R     +V +NDPFITTD M Y+FKYD+VHG++      K  +L++    TL      + V   +NP EIPW
Sbjct:    4 RVGINGFGRIGRLVLRVLLSRGMPANVVLINDPFITTDAMAYIFKYDTVHGRFPGTVVGKEGKLEI----TLNGHVYDIAVSACKNPAEIPW 91          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P1_JACOR (Glyceraldehyde-3-phosphate dehydrogenase, muscle OS=Jaculus orientalis PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.024e-15
Identity = 44/116 (37.93%), Postives = 60/116 (51.72%), Query Frame = 1
Query:   28 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKD--------------DKT--------------LLFGEKPVTVFGVRNPEEIPWAE 291
            VK+G+NGFGRIGRLV R       V++VA+NDPFI  +YM YMFKYDS HG++K   + + D              D T              L+     +T+F  R+P +I W +
Sbjct:    2 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFKYDSTHGKFKVDIVAINDPFIDLNYMVYMFKYDSTHGKFKGTVKAENGKLVINGHAITIFQERDPSKIKWGD 117          
The following BLAST results are available for this feature:
BLAST of CF503816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 182
Match NameE-valueIdentityDescription
G3PT_MOUSE2.064e-1646.59Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3PT_MACFA2.696e-1642.27Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P_EMENI3.521e-1648.28Glyceraldehyde-3-phosphate dehydrogenase OS=Emeric... [more]
G3PC_SCEVA3.521e-1650.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_TRIAT4.599e-1645.45Glyceraldehyde-3-phosphate dehydrogenase OS=Tricho... [more]
G3P2_SCHPO4.599e-1647.67Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schi... [more]
G3PA_GUITH6.006e-1642.57Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3P_MYCPN7.844e-1645.45Glyceraldehyde-3-phosphate dehydrogenase OS=Mycopl... [more]
G3P_MASBA1.024e-1548.91Glyceraldehyde-3-phosphate dehydrogenase OS=Mastig... [more]
G3P1_JACOR1.024e-1537.93Glyceraldehyde-3-phosphate dehydrogenase, muscle O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-303 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_B04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503816 ID=CF503816; Name=CF503816; organism=Citrus sinensis; type=EST; length=291bp
CCTCGTGCCGCGAGAATCATGGGGAAGGTCAAGATCGGAATCAACGGATT
CGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGGACGATG
TTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTACATGACA
TACATGTTTAAGTACGACAGTGTTCACGGTCAATGGAAGCACCATGAATT
GAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTGTCACTG
TTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAG
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