CF503816

Overview
NameCF503816
Unique NameCF503816
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length291
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P1_DROME (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Drosophila melanogaster GN=Gapdh1 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 2.282e-15
Identity = 42/86 (48.84%), Postives = 55/86 (63.95%), Query Frame = 1
Query:   31 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWA 288
            KIGINGFGRIGRLV R  + +    +VAVNDPFI  +YM Y+FK+DS HG++K       +   L+   + +TVF  R+P  I WA
Sbjct:    3 KIGINGFGRIGRLVLRAAIDKG-ASVVAVNDPFIDVNYMVYLFKFDSTHGRFK--GTVAAEGGFLVVNGQKITVFSERDPANINWA 85          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P_BUCAP (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=gapA PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 3.893e-15
Identity = 36/86 (41.86%), Postives = 64/86 (74.42%), Query Frame = 1
Query:   28 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPW 285
            +KIGINGFGRIGR++ R+  +R+++E+VA+ND  +   Y+ YM KYDS HG +K  +++VK++  ++ G+K + +  +++PE++ W
Sbjct:    3 IKIGINGFGRIGRVLFRLAQERENIEVVAIND-LLDPKYIAYMLKYDSTHGNFK-KDIEVKNNNLIINGKK-IRITSIKDPEKLMW 85          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P1_SALTY (Glyceraldehyde-3-phosphate dehydrogenase OS=Salmonella typhimurium GN=gapA PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 3.893e-15
Identity = 40/88 (45.45%), Postives = 59/88 (67.05%), Query Frame = 1
Query:   28 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            +K+GINGFGRIGR+V R   +R D+E+VA+ND  +  +YM YM KYDS HG++    ++VKD   ++ G+K + V   R+P  + W E
Sbjct:    3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDAEYMAYMLKYDSTHGRF-DGTVEVKDGHLIVNGKK-IRVTAERDPANLKWDE 87          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P1_SALTI (Glyceraldehyde-3-phosphate dehydrogenase OS=Salmonella typhi GN=gapA PE=3 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 3.893e-15
Identity = 40/88 (45.45%), Postives = 59/88 (67.05%), Query Frame = 1
Query:   28 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            +K+GINGFGRIGR+V R   +R D+E+VA+ND  +  +YM YM KYDS HG++    ++VKD   ++ G+K + V   R+P  + W E
Sbjct:    3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDAEYMAYMLKYDSTHGRF-DGTVEVKDGHLIVNGKK-IRVTAERDPANLKWDE 87          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P1_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap1 PE=3 SV=4)

HSP 1 Score: 79.337 bits (194), Expect = 6.640e-15
Identity = 39/91 (42.86%), Postives = 58/91 (63.74%), Query Frame = 1
Query:   19 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            M K+K+GINGFGRIGRLV R  +   ++E V +ND  +  D + Y+ KYDS HG+ +  +++ KDD  ++ G   +    VRNP E+PW +
Sbjct:    1 MAKLKVGINGFGRIGRLVLRAGINNPNIEFVGIND-LVPPDNLAYLLKYDSTHGKLR-SQVEAKDDGIVIDGHF-IPCVSVRNPAELPWGK 88          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P1_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anabaena sp. (strain PCC 7120) GN=gap1 PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 6.640e-15
Identity = 39/91 (42.86%), Postives = 58/91 (63.74%), Query Frame = 1
Query:   19 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            M K+K+GINGFGRIGRLV R  +   ++E V +ND  +  D + Y+ KYDS HG+ +  +++ KDD  ++ G   +    VRNP E+PW +
Sbjct:    1 MAKLKVGINGFGRIGRLVLRAGINNPNIEFVGIND-LVPPDNLAYLLKYDSTHGRLR-SQVETKDDGIVIDGHF-IPCVSVRNPAELPWGK 88          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P_HAEIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Haemophilus influenzae GN=gapA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.673e-15
Identity = 41/86 (47.67%), Postives = 56/86 (65.12%), Query Frame = 1
Query:   28 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPW 285
            +KIGINGFGRIGR+V R    RDD+E+V +ND  I  +YM YM KYDS HG++    ++VKD   ++ G K + V   R+P  + W
Sbjct:    3 IKIGINGFGRIGRIVFRAAQHRDDIEVVGIND-LIDVEYMAYMLKYDSTHGRF-DGTVEVKDGNLVVNG-KTIRVTAERDPANLNW 85          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P_RALSO (Glyceraldehyde-3-phosphate dehydrogenase OS=Ralstonia solanacearum GN=gapA PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.133e-14
Identity = 43/89 (48.31%), Postives = 59/89 (66.29%), Query Frame = 1
Query:   28 VKIGINGFGRIGRLVAR-VILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            +KIGINGFGRIGR+V R  I    D+E+VA+ND  +  DY+ YM KYDSVHG++   E+ V D  TL+   K + +  V++P E+ W E
Sbjct:    3 IKIGINGFGRIGRMVFRAAIANFKDIEVVAIND-LLEPDYLAYMLKYDSVHGRF-DGEVSV-DGNTLVVNGKKIRLTAVKDPAELKWGE 88          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P_DICDI (Glyceraldehyde-3-phosphate dehydrogenase OS=Dictyostelium discoideum GN=gpdA PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.932e-14
Identity = 37/87 (42.53%), Postives = 53/87 (60.92%), Query Frame = 1
Query:   28 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWA 288
            V IGINGFGRIGRLV R  L+  +  ++A+N+PF+   YM YMFKYDS HG++K     +  +   +     + VF  ++P  I W+
Sbjct:    3 VPIGINGFGRIGRLVLRASLENPECRVLAINEPFMDVKYMVYMFKYDSTHGRFKGTVEDINGE--FVVNGNKIHVFAEKDPANIKWS 87          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P_AQUAE (Glyceraldehyde-3-phosphate dehydrogenase OS=Aquifex aeolicus GN=gap PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.589e-14
Identity = 37/88 (42.05%), Postives = 58/88 (65.91%), Query Frame = 1
Query:   28 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            +K+GINGFGRIGR   R    R+++E+VA+ND      ++ ++ KYDSVHG +K   ++ KDD  ++ G K + VF  ++P +IPW +
Sbjct:    3 IKVGINGFGRIGRSFFRASWGREEIEIVAIND-LTDAKHLAHLLKYDSVHGIFK-GSVEAKDDSIVVDG-KEIKVFAQKDPSQIPWGD 87          
The following BLAST results are available for this feature:
BLAST of CF503816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 182
Match NameE-valueIdentityDescription
G3P1_DROME2.282e-1548.84Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Dros... [more]
G3P_BUCAP3.893e-1541.86Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]
G3P1_SALTY3.893e-1545.45Glyceraldehyde-3-phosphate dehydrogenase OS=Salmon... [more]
G3P1_SALTI3.893e-1545.45Glyceraldehyde-3-phosphate dehydrogenase OS=Salmon... [more]
G3P1_ANAVT6.640e-1542.86Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anab... [more]
G3P1_ANASP6.640e-1542.86Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anab... [more]
G3P_HAEIN8.673e-1547.67Glyceraldehyde-3-phosphate dehydrogenase OS=Haemop... [more]
G3P_RALSO1.133e-1448.31Glyceraldehyde-3-phosphate dehydrogenase OS=Ralsto... [more]
G3P_DICDI1.932e-1442.53Glyceraldehyde-3-phosphate dehydrogenase OS=Dictyo... [more]
G3P_AQUAE9.589e-1442.05Glyceraldehyde-3-phosphate dehydrogenase OS=Aquife... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-303 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_B04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503816 ID=CF503816; Name=CF503816; organism=Citrus sinensis; type=EST; length=291bp
CCTCGTGCCGCGAGAATCATGGGGAAGGTCAAGATCGGAATCAACGGATT
CGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGGACGATG
TTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTACATGACA
TACATGTTTAAGTACGACAGTGTTCACGGTCAATGGAAGCACCATGAATT
GAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTGTCACTG
TTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAG
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