CF503816

Overview
NameCF503816
Unique NameCF503816
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length291
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3PC_TRYBB (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Trypanosoma brucei brucei PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 1.252e-13
Identity = 37/88 (42.05%), Postives = 59/88 (67.05%), Query Frame = 1
Query:   28 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            +++GINGFGRIGR+V R   +R+D+E+V +ND  +  DYM YM KYDS HG+++   ++V+    ++ G+K + V   R+P  + W E
Sbjct:    3 IRVGINGFGRIGRVVFRAAQRRNDIEIVGIND-LLDADYMAYMLKYDSTHGRFE-GAVEVQGGALVVNGKK-IRVTSERDPANLKWNE 87          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P1_SYNY3 (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Synechocystis sp. (strain PCC 6803) GN=gap1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.636e-13
Identity = 36/88 (40.91%), Postives = 54/88 (61.36%), Query Frame = 1
Query:   28 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            +KIGINGFGRIGRLVAR+ +    V LV +ND  +    + Y+FKYDS HG   +    V  ++ ++  ++ +  F  RNP ++PW +
Sbjct:    2 LKIGINGFGRIGRLVARIAMANPQVTLVGIND-LVPASNLAYLFKYDSTHG--SYGGTVVAKEEGIVIDDQFIPCFSQRNPAQLPWGD 86          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P_BOLED (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Boletus edulis GN=GPD PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.790e-13
Identity = 35/67 (52.24%), Postives = 47/67 (70.15%), Query Frame = 1
Query:   85 LQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPW 285
            L+  ++ + AVNDPFI  DYM YMFKYDSVHG+++  E+  KD K ++ G K +TVF  R+P  IPW
Sbjct:    1 LENPEINITAVNDPFIDLDYMVYMFKYDSVHGRFE-GEVSTKDGKLVING-KAITVFAERDPANIPW 65          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P_MESAU (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Mesocricetus auratus GN=GAPDH PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.644e-13
Identity = 36/79 (45.57%), Postives = 52/79 (65.82%), Query Frame = 1
Query:   55 RIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            RIGRLV R       V++VA+NDPFI  +YM YMF+YDS HG++K   +K ++ K ++ G K +T+F  R+P  I W +
Sbjct:    1 RIGRLVTRAAFTSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFK-GTVKAENGKLVING-KAITIFQERDPTNIKWGD 77          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P_BACCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus coagulans GN=gap PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.644e-13
Identity = 40/88 (45.45%), Postives = 54/88 (61.36%), Query Frame = 1
Query:   28 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            VK+GINGFGRIGR V R  ++  D+E+VAVND     D + ++ KYDSVHG+    E+ V D  ++    K + V   RNPE + W E
Sbjct:    3 VKVGINGFGRIGRNVFRAAVKNPDIEVVAVNDLTANADGLAHLLKYDSVHGR-LDAEVVVNDGVSV--NGKEIIVKAERNPENLAWGE 87          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P_MYCGE (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoplasma genitalium GN=gapA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.759e-13
Identity = 38/88 (43.18%), Postives = 57/88 (64.77%), Query Frame = 1
Query:   28 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            +K+ INGFGRIGRLV R +L + +VE+VA+ND     + + ++ KYDS HG+ K  ++ VK +  L    K V VF  ++P+ +PW E
Sbjct:    8 IKVAINGFGRIGRLVFRSLLSKANVEVVAIND-LTQPEVLAHLLKYDSAHGELK-RKITVKQN-ILQIDRKKVYVFSEKDPQNLPWDE 92          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P_KLEPN (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Klebsiella pneumoniae GN=gap PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.759e-13
Identity = 38/84 (45.24%), Postives = 55/84 (65.48%), Query Frame = 1
Query:   40 INGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            INGFGRIGR+V R   +R D+E+VA+ND  +  +YM YM KYDS HG++    ++VKD   ++ G+K + V   R+P  + W E
Sbjct:    1 INGFGRIGRIVFRAAQKRSDIEIVAIND-LLDAEYMAYMLKYDSTHGRF-DGTVEVKDGHLVVNGKK-IRVTAERDPANLKWDE 81          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P_BUCBP (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=gapA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.215e-13
Identity = 34/88 (38.64%), Postives = 59/88 (67.05%), Query Frame = 1
Query:   28 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            +KIGINGFGRIGR++ R+   R ++E++A+ND  I   Y+ YM KYDS+HG + + ++ +K++ TL    K + +   ++P+ + W +
Sbjct:    3 IKIGINGFGRIGRVLFRLAQLRSNIEILAIND-LINVQYIAYMLKYDSIHGNF-NGKIVIKNE-TLFVNGKKIRITNEKDPKNLMWGD 87          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P_SHEEP (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Ovis aries GN=GAPDH PE=2 SV=4)

HSP 1 Score: 72.4034 bits (176), Expect = 8.117e-13
Identity = 35/78 (44.87%), Postives = 50/78 (64.10%), Query Frame = 1
Query:   58 IGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            IGRLV R       V++VA+NDPFI   YM YMF+YDS HG++ H  +K ++ K ++ G K +T+F  R+P  I W +
Sbjct:    1 IGRLVTRAAFNTGKVDIVAINDPFIDLHYMVYMFQYDSTHGKF-HGTVKAENGKLVING-KAITIFQERDPANIKWGD 76          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3PG_TRYBB (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Trypanosoma brucei brucei PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 1.060e-12
Identity = 38/99 (38.38%), Postives = 57/99 (57.58%), Query Frame = 1
Query:   28 VKIGINGFGRIGRLVARVI----LQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKH-------HELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            +K+GINGFGRIGR+V + +    L  +++++VAV D      Y  Y  KYDSVHG++KH            KDD  ++ G + + V   RNP ++PW +
Sbjct:    3 IKVGINGFGRIGRMVFQALCDDGLLGNEIDVVAVVDMNTDARYFAYQMKYDSVHGKFKHSVSTTKSKPSVAKDDTLVVNGHRILCVKAQRNPADLPWGK 101          
The following BLAST results are available for this feature:
BLAST of CF503816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 182
Match NameE-valueIdentityDescription
G3PC_TRYBB1.252e-1342.05Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P1_SYNY31.636e-1340.91Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Syne... [more]
G3P_BOLED2.790e-1352.24Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_MESAU3.644e-1345.57Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_BACCO3.644e-1345.45Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]
G3P_MYCGE4.759e-1343.18Glyceraldehyde-3-phosphate dehydrogenase OS=Mycopl... [more]
G3P_KLEPN4.759e-1345.24Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_BUCBP6.215e-1338.64Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]
G3P_SHEEP8.117e-1344.87Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3PG_TRYBB1.060e-1238.38Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-303 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_B04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503816 ID=CF503816; Name=CF503816; organism=Citrus sinensis; type=EST; length=291bp
CCTCGTGCCGCGAGAATCATGGGGAAGGTCAAGATCGGAATCAACGGATT
CGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGGACGATG
TTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTACATGACA
TACATGTTTAAGTACGACAGTGTTCACGGTCAATGGAAGCACCATGAATT
GAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTGTCACTG
TTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAG
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