CF503816

Overview
NameCF503816
Unique NameCF503816
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length291
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1066 contig Csv1_Contig1066:365..655. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P_CLOPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Clostridium pasteurianum GN=gap PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.872e-12
Identity = 38/87 (43.68%), Postives = 57/87 (65.52%), Query Frame = 1
Query:   31 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            K+ INGFGRIGRL  R IL+   +E+VA+ND       + ++FKYDS  G++ + E++VK+   ++ G K V VF   +PE++PW E
Sbjct:    3 KVAINGFGRIGRLALRRILEVPGLEVVAIND-LTDAKMLAHLFKYDSSQGRF-NGEIEVKEGAFVVNG-KEVKVFAEADPEKLPWGE 86          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P_BACFR (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacteroides fragilis GN=gap PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.872e-12
Identity = 35/90 (38.89%), Postives = 59/90 (65.56%), Query Frame = 1
Query:   28 VKIGINGFGRIGRLVARVILQR--DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            +K+GINGFGRIGR+V R  ++   +D+++V +ND  +  +Y+ YM KYDSVHG+++  E+ V+D   ++ G K + +    +P  + W E
Sbjct:    2 IKVGINGFGRIGRMVFRAAVKNFGNDIQIVGIND-LLDAEYLAYMLKYDSVHGRFE-GEVAVEDGALIVNGNK-IRLTAEMDPANLKWNE 88          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3PG_TRYCR (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Trypanosoma cruzi PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.975e-12
Identity = 35/99 (35.35%), Postives = 57/99 (57.58%), Query Frame = 1
Query:   28 VKIGINGFGRIGRLVARVI----LQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELK-------VKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            +K+GINGFGRIGR+V + +    L   ++++VAV D     +Y  Y  +YD+VHG++K+            KDD  ++ G + + V   RNP ++PW +
Sbjct:    3 IKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMRYDTVHGKFKYEVTTTKSSPSVAKDDTLVVNGHRILCVKAQRNPADLPWGK 101          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P_CLOAB (Glyceraldehyde-3-phosphate dehydrogenase OS=Clostridium acetobutylicum GN=gap PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.172e-11
Identity = 38/87 (43.68%), Postives = 57/87 (65.52%), Query Frame = 1
Query:   31 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            KI INGFGRIGRL  R IL+   +E+VA+ND       + ++FKYDS  G++ + E++VK+   ++ G K V VF   +PE++PW +
Sbjct:    3 KIAINGFGRIGRLALRRILEVPGLEVVAIND-LTDAKMLAHLFKYDSSQGRF-NGEIEVKEGAFVVNG-KEVKVFAEADPEKLPWGD 86          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P_LACDE (Glyceraldehyde-3-phosphate dehydrogenase OS=Lactobacillus delbrueckii subsp. bulgaricus GN=gap PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.454e-11
Identity = 38/92 (41.30%), Postives = 55/92 (59.78%), Query Frame = 1
Query:   28 VKIGINGFGRIGRLVARVIL----QRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            VKIGINGFGRIGRL  R I+    +  D+E+VA+ND   T   + ++ KYDS HG +  HE+   +D  ++ G+K   V+     + IPW +
Sbjct:    3 VKIGINGFGRIGRLAFRRIMDLGEETKDIEVVAIND-LTTPAMLAHLLKYDSTHGTF-DHEVSATEDSLVVDGKK-YRVYAEPQAQNIPWVK 91          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P2_RHOSH (Glyceraldehyde-3-phosphate dehydrogenase B OS=Rhodobacter sphaeroides GN=gapB PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.454e-11
Identity = 35/89 (39.33%), Postives = 54/89 (60.67%), Query Frame = 1
Query:   28 VKIGINGFGRIGRLVARVILQ--RDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWA 288
            +++ INGFGRIGR V R I++  R D+E+VA+ND     +   ++ ++DSVHG++         D  +  G  P+ V  +RNP E+PWA
Sbjct:    3 IRVAINGFGRIGRNVLRAIVESGRTDIEVVAIND-LGQVETNAHLLRFDSVHGRFP--AKVTSGDDWIDVGRGPIKVTAIRNPAELPWA 88          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P1_BACCE (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Bacillus cereus GN=gap1 PE=1 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 4.454e-11
Identity = 35/87 (40.23%), Postives = 54/87 (62.07%), Query Frame = 1
Query:   31 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            KIGINGFGRIGR V R  L   +VE+VA+ND       + ++ KYD+VHG   + E+   ++  ++ G K + V   R+P ++PW++
Sbjct:    3 KIGINGFGRIGRNVFRAALNNSEVEVVAIND-LTDAKTLAHLLKYDTVHGT-LNAEVSANENSIVVNG-KEIKVIAERDPAQLPWSD 86          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P_LACDT (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Lactarius deterrimus GN=GPD PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.598e-11
Identity = 32/62 (51.61%), Postives = 45/62 (72.58%), Query Frame = 1
Query:  100 VELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPW 285
            V+++AV+DPFI   YM YMFKYDSVHG++K   +++KD K ++ G  P+TVF  R+P  I W
Sbjct:    6 VKVLAVSDPFIDLQYMVYMFKYDSVHGRFK-GTVEIKDGKLVIDGH-PITVFQERDPANIQW 65          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P2_DROSU (Glyceraldehyde-3-phosphate dehydrogenase 2 (Fragment) OS=Drosophila subobscura GN=Gapdh2 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.598e-11
Identity = 35/78 (44.87%), Postives = 48/78 (61.54%), Query Frame = 1
Query:   55 RIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWA 288
            RIGRLV R  + +    +VAVNDPFI  +YM Y+FK+DS HG++K     V +   L+   + +TVF  R+P  I WA
Sbjct:    1 RIGRLVLRAAIDKG-ASVVAVNDPFIDVNYMVYLFKFDSTHGRFK--GTVVAEGGFLVVNGQKITVFSERDPANINWA 75          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3PG_LEIME (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Leishmania mexicana GN=GAPG PE=1 SV=3)

HSP 1 Score: 65.4698 bits (158), Expect = 9.923e-11
Identity = 36/102 (35.29%), Postives = 56/102 (54.90%), Query Frame = 1
Query:   19 MGKVKIGINGFGRIGRLVARVILQR----DDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKD-------DKTLLFGEKPVTVFGVRNPEEIPWAE 291
            M  +K+GINGFGRIGR+V + I  +     ++++VAV D     +Y  Y  K+D+VHG+ K+    VK        D  ++ G +   V   RNP ++PW +
Sbjct:    1 MAPIKVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKHDTVHGRPKYTVEAVKSSPSVETADVLVVNGHRIKCVKAQRNPADLPWGK 102          
The following BLAST results are available for this feature:
BLAST of CF503816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 182
Match NameE-valueIdentityDescription
G3P_CLOPA6.872e-1243.68Glyceraldehyde-3-phosphate dehydrogenase OS=Clostr... [more]
G3P_BACFR6.872e-1238.89Glyceraldehyde-3-phosphate dehydrogenase OS=Bacter... [more]
G3PG_TRYCR8.975e-1235.35Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]
G3P_CLOAB1.172e-1143.68Glyceraldehyde-3-phosphate dehydrogenase OS=Clostr... [more]
G3P_LACDE4.454e-1141.30Glyceraldehyde-3-phosphate dehydrogenase OS=Lactob... [more]
G3P2_RHOSH4.454e-1139.33Glyceraldehyde-3-phosphate dehydrogenase B OS=Rhod... [more]
G3P1_BACCE4.454e-1140.23Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Baci... [more]
G3P_LACDT7.598e-1151.61Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P2_DROSU7.598e-1144.87Glyceraldehyde-3-phosphate dehydrogenase 2 (Fragme... [more]
G3PG_LEIME9.923e-1135.29Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-303 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_B04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503816 ID=CF503816; Name=CF503816; organism=Citrus sinensis; type=EST; length=291bp
CCTCGTGCCGCGAGAATCATGGGGAAGGTCAAGATCGGAATCAACGGATT
CGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGGACGATG
TTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTACATGACA
TACATGTTTAAGTACGACAGTGTTCACGGTCAATGGAAGCACCATGAATT
GAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTGTCACTG
TTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAG
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