CF503816

Overview
NameCF503816
Unique NameCF503816
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length291
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1066 contig Csv1_Contig1066:365..655. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P_PHARH (Glyceraldehyde-3-phosphate dehydrogenase OS=Phaffia rhodozyma GN=GPD PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.381e-20
Identity = 46/86 (53.49%), Postives = 63/86 (73.26%), Query Frame = 1
Query:   28 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPW 285
            VK+GINGFGRIGR+V R  +   D+++VA+NDPFI  +YM YMFKYDS HG +K   +++KD K ++ G KP+ V+G R+P  I W
Sbjct:    3 VKVGINGFGRIGRIVLRNAIIHGDIDVVAINDPFIDLEYMVYMFKYDSTHGVFK-GSVEIKDGKLVIEG-KPIVVYGERDPANIQW 86          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P_PICAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia angusta GN=GPD PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.804e-20
Identity = 45/86 (52.33%), Postives = 58/86 (67.44%), Query Frame = 1
Query:   34 IGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            +GINGFGRIGRLV R+ L RDD+ ++A+NDPFI  DY  YMFKYDS HG++K       + K L+   K + VF  R+P  IPW +
Sbjct:    5 VGINGFGRIGRLVLRIALSRDDINVIAINDPFIAPDYAAYMFKYDSTHGKFK--GTVTHEGKYLVINGKKIEVFQERDPANIPWGK 88          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P1_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Candida glabrata GN=GPD1 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.804e-20
Identity = 42/88 (47.73%), Postives = 61/88 (69.32%), Query Frame = 1
Query:   28 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            V++ INGFGRIGR+V R+ ++RD +++VA+NDPFIT DY  YMFKYDS HG++        DDK L+   K +  +  R+P ++PW +
Sbjct:    2 VRVAINGFGRIGRIVLRIAMKRDGIDVVAINDPFITNDYAAYMFKYDSTHGRYDGE--VTHDDKDLIIDGKAIKCYQERDPADLPWGD 87          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P_ERYGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Erysiphe graminis subsp. hordei GN=GPD PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.356e-20
Identity = 49/91 (53.85%), Postives = 60/91 (65.93%), Query Frame = 1
Query:   19 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            M  +K+GINGFGRIGR+V R   Q  +VE+VAVNDPFI  +Y  YM KYDS HGQ+      V+D   L+   + V  +  RNPEEIPWAE
Sbjct:    1 MAPIKVGINGFGRIGRIVFRNAAQSCEVEVVAVNDPFIEPEYAAYMLKYDSTHGQFNGDIQTVEDG--LVVNSRNVKFYNKRNPEEIPWAE 89          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P2_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces marxianus GN=GAP2 PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 3.077e-20
Identity = 47/86 (54.65%), Postives = 59/86 (68.60%), Query Frame = 1
Query:   28 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPW 285
            V+I INGFGRIGRLV R+ L R ++E+VA+NDPFIT DY  YMFKYDS HG++        D K+L+   K V VF  R+P  +PW
Sbjct:    2 VRIAINGFGRIGRLVLRIALSRKNIEVVAINDPFITVDYAAYMFKYDSTHGRFDGE--VSHDGKSLIIDGKKVLVFQERDPATLPW 85          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P_LYOSH (Glyceraldehyde-3-phosphate dehydrogenase OS=Lyophyllum shimeji GN=GPD PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.019e-20
Identity = 47/86 (54.65%), Postives = 62/86 (72.09%), Query Frame = 1
Query:   28 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPW 285
            V +GINGFGRIGR+V R  L    +++VA+NDPFI  +YM YMFKYDSVHG++K   ++ KD K  + G KPV V+G +NP +I W
Sbjct:    2 VNVGINGFGRIGRIVFRNALLNPKIQVVAINDPFINLEYMVYMFKYDSVHGRFK-GTVEAKDGKLWIQG-KPVIVYGEKNPSDIKW 85          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3PC_CHOCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Chondrus crispus GN=GAPC PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.019e-20
Identity = 46/86 (53.49%), Postives = 61/86 (70.93%), Query Frame = 1
Query:   31 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWA 288
            K+GINGFGRIGRLV R  +++   ++VA+NDPFI  DYM YM KYDS HG++   ++ +KD K  + G   +TVF  R+P EIPWA
Sbjct:    5 KVGINGFGRIGRLVLRAAIEKGTCQVVAINDPFIDLDYMAYMLKYDSTHGRYA-GDVSIKDGKLQVDGNS-ITVFAHRDPAEIPWA 88          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P3_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluyveromyces marxianus GN=GAP3 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.019e-20
Identity = 47/86 (54.65%), Postives = 58/86 (67.44%), Query Frame = 1
Query:   28 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPW 285
            V+I INGFGRIGRLV R+ L R ++E+VA+NDPFIT DY  YMFKYDS HG++        D K L+   K V VF  R+P  +PW
Sbjct:    2 VRIAINGFGRIGRLVLRIALSRKNIEVVAINDPFITVDYAAYMFKYDSTHGRFDGE--VSHDGKALIIDGKKVLVFQERDPATLPW 85          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P2_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces lactis GN=GAP2 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.019e-20
Identity = 46/88 (52.27%), Postives = 60/88 (68.18%), Query Frame = 1
Query:   28 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAE 291
            V++ INGFGRIGRLV R+ L R +VE+VA+NDPFI+ DY  YMFKYDS HG++        D+ +L+   K V VF  R+P  +PW E
Sbjct:    2 VRVAINGFGRIGRLVLRIALSRPNVEVVAINDPFISVDYAAYMFKYDSTHGRFAGE--VSHDENSLIIDGKKVLVFQERDPATLPWGE 87          
BLAST of CF503816 vs. ExPASy Swiss-Prot
Match: G3P_BRUMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia malayi GN=G3PD PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.856e-20
Identity = 47/92 (51.09%), Postives = 63/92 (68.48%), Query Frame = 1
Query:   19 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKP---VTVFGVRNPEEIPW 285
            M K K+GINGFGRIGRLV R  +++D V++VAVNDPFI  DYM YMFKYDS HG++K   +  +  K ++   K    ++V   ++P EIPW
Sbjct:    1 MSKPKVGINGFGRIGRLVLRAAVEKDTVDVVAVNDPFINIDYMVYMFKYDSTHGRFK-GSVSAEGGKLIVTNGKTTHHISVHNSKDPAEIPW 91          
The following BLAST results are available for this feature:
BLAST of CF503816 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 182
Match NameE-valueIdentityDescription
G3P_PHARH1.381e-2053.49Glyceraldehyde-3-phosphate dehydrogenase OS=Phaffi... [more]
G3P_PICAN1.804e-2052.33Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P1_CANGA1.804e-2047.73Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Cand... [more]
G3P_ERYGR2.356e-2053.85Glyceraldehyde-3-phosphate dehydrogenase OS=Erysip... [more]
G3P2_KLUMA3.077e-2054.65Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]
G3P_LYOSH4.019e-2054.65Glyceraldehyde-3-phosphate dehydrogenase OS=Lyophy... [more]
G3PC_CHOCR4.019e-2053.49Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P3_KLUMA4.019e-2054.65Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Kluy... [more]
G3P2_KLULA4.019e-2052.27Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]
G3P_BRUMA6.856e-2051.09Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-303 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_B04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503816 ID=CF503816; Name=CF503816; organism=Citrus sinensis; type=EST; length=291bp
CCTCGTGCCGCGAGAATCATGGGGAAGGTCAAGATCGGAATCAACGGATT
CGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGGACGATG
TTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTACATGACA
TACATGTTTAAGTACGACAGTGTTCACGGTCAATGGAAGCACCATGAATT
GAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTGTCACTG
TTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAG
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