CF503836

Overview
NameCF503836
Unique NameCF503836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length341
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12348 contig Csv1_Contig12348:176..516. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503836 vs. ExPASy Swiss-Prot
Match: EF1A_METBF (Elongation factor 1-alpha OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=tuf PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.690e-11
Identity = 29/64 (45.31%), Postives = 47/64 (73.44%), Query Frame = 1
Query:  145 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEER 336
            +K H+N+  IGH+D GKST  G++++ +G V    I+KY++EAK K +ES+  A++MD+ +EER
Sbjct:    4 DKPHMNLAVIGHIDHGKSTFVGRLMYDAGAVPAHVIEKYKEEAKQKGKESFAFAWVMDSLKEER 67          
BLAST of CF503836 vs. ExPASy Swiss-Prot
Match: EF1A_TETPY (Elongation factor 1-alpha OS=Tetrahymena pyriformis PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.431e-11
Identity = 28/64 (43.75%), Postives = 47/64 (73.44%), Query Frame = 1
Query:  145 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEER 336
            +K H+N+V IGHVD+GKSTT G +++  G +D R I+K+EKE+ ++ + S+  A+++D  + ER
Sbjct:    5 DKVHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRVIEKFEKESAEQGKGSFKYAWVLDKLKAER 68          
BLAST of CF503836 vs. ExPASy Swiss-Prot
Match: EF1A_PICTO (Elongation factor 1-alpha OS=Picrophilus torridus GN=tuf PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.431e-11
Identity = 29/65 (44.62%), Postives = 46/65 (70.77%), Query Frame = 1
Query:  142 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEER 336
            + K H+N+V IGHVD GKST  G++LF  G++    I +Y+KEA++K + ++  A++MD  +EER
Sbjct:    3 SEKPHMNLVIIGHVDHGKSTLVGRLLFEHGEIPQHIIDEYKKEAEEKGKATFEFAWVMDRFKEER 67          
BLAST of CF503836 vs. ExPASy Swiss-Prot
Match: EF1A_METMA (Elongation factor 1-alpha OS=Methanosarcina mazei GN=tuf PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.431e-11
Identity = 29/64 (45.31%), Postives = 47/64 (73.44%), Query Frame = 1
Query:  145 NKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEER 336
            +K H+N+  IGH+D GKST  G++++ +G V    I+KY++EAK K +ES+  A++MD+ +EER
Sbjct:    4 DKPHMNLAVIGHIDHGKSTFVGRLMYDAGAVPAHIIEKYKEEAKQKGKESFAFAWVMDSLKEER 67          
BLAST of CF503836 vs. ExPASy Swiss-Prot
Match: EF1A_DESMO (Elongation factor 1-alpha OS=Desulfurococcus mobilis GN=tuf PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.431e-11
Identity = 30/63 (47.62%), Postives = 44/63 (69.84%), Query Frame = 1
Query:  148 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEER 336
            K HLN+V IGHVD GKST  G IL+  G  D++T++  E+E+K   +ES+  A+++D  +EER
Sbjct:    6 KPHLNIVIIGHVDHGKSTMTGHILYRLGYFDEKTVKMIEEESKKMGKESFKFAWLLDRMKEER 68          
BLAST of CF503836 vs. ExPASy Swiss-Prot
Match: EF1A2_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare GN=BLT63 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.431e-11
Identity = 28/66 (42.42%), Postives = 46/66 (69.70%), Query Frame = 1
Query:  139 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEER 336
            G  K H+++V IGHVD+GKSTT G +++  G +D R I+ +EKEA + ++ S+  A+++D  + ER
Sbjct:    2 GKEKIHISIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIESFEKEAAEMNKRSFKYAWVLDKLKAER 67          
BLAST of CF503836 vs. ExPASy Swiss-Prot
Match: EF1A_METPE (Elongation factor 1-alpha OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=tuf PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.705e-11
Identity = 29/65 (44.62%), Postives = 45/65 (69.23%), Query Frame = 1
Query:  142 NNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEER 336
            N+K H+N+  IGH+D GKSTT G+++F +G V    I+ + KEA+ K + S+  A++MD  +EER
Sbjct:    3 NDKPHMNLAVIGHIDHGKSTTVGRLMFETGAVPAHIIENFRKEAESKGKGSFEFAWVMDNLKEER 67          
BLAST of CF503836 vs. ExPASy Swiss-Prot
Match: EF1A_METM5 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=tuf PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.705e-11
Identity = 31/60 (51.67%), Postives = 43/60 (71.67%), Query Frame = 1
Query:  157 LNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEER 336
            LNV FIGHVDAGKSTT G++L   G +D + I + +KEA++K +  +  AY+MD  +EER
Sbjct:    8 LNVAFIGHVDAGKSTTVGRLLLDGGAIDPQLIVRLKKEAEEKGKAGFEFAYVMDGLKEER 67          
BLAST of CF503836 vs. ExPASy Swiss-Prot
Match: EF1A_HYDAT (Elongation factor 1-alpha OS=Hydra attenuata PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.705e-11
Identity = 28/63 (44.44%), Postives = 46/63 (73.02%), Query Frame = 1
Query:  148 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEER 336
            K H+N+V IGHVD+GKST+ G +++  G +D R I+K+EKEA++  + S+  A+++D  + ER
Sbjct:    6 KPHINIVVIGHVDSGKSTSTGHMIYKCGGIDKRQIEKFEKEAQEMGKGSFKYAWVLDKLKAER 68          
The following BLAST results are available for this feature:
BLAST of CF503836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
EF1A_METBF5.690e-1145.31Elongation factor 1-alpha OS=Methanosarcina barker... [more]
EF1A_TETPY7.431e-1143.75Elongation factor 1-alpha OS=Tetrahymena pyriformi... [more]
EF1A_PICTO7.431e-1144.62Elongation factor 1-alpha OS=Picrophilus torridus ... [more]
EF1A_METMA7.431e-1145.31Elongation factor 1-alpha OS=Methanosarcina mazei ... [more]
EF1A_DESMO7.431e-1147.62Elongation factor 1-alpha OS=Desulfurococcus mobil... [more]
EF1A2_HORVU7.431e-1142.42Elongation factor 1-alpha OS=Hordeum vulgare GN=BL... [more]
EF1A_METPE9.705e-1144.62Elongation factor 1-alpha OS=Methanosphaerula palu... [more]
EF1A_METM59.705e-1151.67Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_HYDAT9.705e-1144.44Elongation factor 1-alpha OS=Hydra attenuata PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-323 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503836 ID=CF503836; Name=CF503836; organism=Citrus sinensis; type=EST; length=341bp
GAAGTTGAGGTGGTGGATAAGATGGAGGAAGATTCAGAGGAGGTGCAAGC
AGTATCCCAGCCTGTTCATCCTGAGCCTAAAGTGAAACACAAGGAAGTAT
CTGCGGTGGAAGATGCTGAATCTCAGCAAGAGACTGAAGGAAATAATAAG
CGACACTTGAATGTTGTATTTATTGGTCATGTTGATGCTGGAAAGTCTAC
CACTGGAGGCCAGATACTTTTTCTTAGTGGCCAGGTCGATGACCGTACAA
TTCAAAAATATGAGAAAGAAGCAAAGGATAAAAGTAGAGAAAGCTGGTAT
ATGGCGTATATTATGGACACTAATGAAGAGGAGAGGATCAA
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