CF503836

Overview
NameCF503836
Unique NameCF503836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length341
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12348 contig Csv1_Contig12348:176..516. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF503836 vs. ExPASy Swiss-Prot
Match: EF1A_PUCGR (Elongation factor 1-alpha OS=Puccinia graminis GN=TEF PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.354e-12
Identity = 32/66 (48.48%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:  139 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEER 336
            G  K H+NVV IGHVD+GKSTT G +++  G +D RTI+K+EKEA +  + S+  A+++D  + ER
Sbjct:    2 GKEKNHVNVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAER 67
[Close]
BLAST of CF503836 vs. ExPASy Swiss-Prot
Match: EF1A_DANRE (Elongation factor 1-alpha OS=Danio rerio GN=eef1a PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.354e-12
Identity = 31/66 (46.97%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:  139 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEER 336
            G  K H+N+V IGHVD+GKSTT G +++  G +D RTI+K+EKEA +  + S+  A+++D  + ER
Sbjct:    2 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAER 67
[Close]
BLAST of CF503836 vs. ExPASy Swiss-Prot
Match: EF1A_CHICK (Elongation factor 1-alpha 1 OS=Gallus gallus GN=EEF1A PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.354e-12
Identity = 31/66 (46.97%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:  139 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEER 336
            G  K H+N+V IGHVD+GKSTT G +++  G +D RTI+K+EKEA +  + S+  A+++D  + ER
Sbjct:    2 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAER 67
[Close]
BLAST of CF503836 vs. ExPASy Swiss-Prot
Match: EF1A_CAEEL (Elongation factor 1-alpha OS=Caenorhabditis elegans GN=eft-3 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.354e-12
Identity = 31/66 (46.97%), Postives = 48/66 (72.73%), Query Frame = 1 
Query:  139 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEER 336
            G  K H+N+V IGHVD+GKSTT G +++  G +D RTI+K+EKEA++  + S+  A+++D  + ER
Sbjct:    2 GKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 67
[Close]
BLAST of CF503836 vs. ExPASy Swiss-Prot
Match: EF1A_ARTSA (Elongation factor 1-alpha OS=Artemia salina PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.354e-12
Identity = 31/66 (46.97%), Postives = 48/66 (72.73%), Query Frame = 1 
Query:  139 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEER 336
            G  K H+N+V IGHVD+GKSTT G +++  G +D RTI+K+EKEA++  + S+  A+++D  + ER
Sbjct:    2 GKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 67
[Close]
BLAST of CF503836 vs. ExPASy Swiss-Prot
Match: EF1A_APIME (Elongation factor 1-alpha OS=Apis mellifera PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.354e-12
Identity = 31/66 (46.97%), Postives = 48/66 (72.73%), Query Frame = 1 
Query:  139 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEER 336
            G  K H+N+V IGHVD+GKSTT G +++  G +D RTI+K+EKEA++  + S+  A+++D  + ER
Sbjct:    2 GKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 67
[Close]
BLAST of CF503836 vs. ExPASy Swiss-Prot
Match: EF1A3_HUMAN (Putative elongation factor 1-alpha-like 3 OS=Homo sapiens GN=EEF1AL3 PE=5 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.354e-12
Identity = 31/66 (46.97%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:  139 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEER 336
            G  K H+N+V IGHVD+GKSTT G +++  G +D RTI+K+EKEA +  + S+  A+++D  + ER
Sbjct:    2 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAER 67
[Close]
BLAST of CF503836 vs. ExPASy Swiss-Prot
Match: EF1A2_RAT (Elongation factor 1-alpha 2 OS=Rattus norvegicus GN=Eef1a2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.354e-12
Identity = 31/66 (46.97%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:  139 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEER 336
            G  K H+N+V IGHVD+GKSTT G +++  G +D RTI+K+EKEA +  + S+  A+++D  + ER
Sbjct:    2 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAER 67
[Close]
BLAST of CF503836 vs. ExPASy Swiss-Prot
Match: EF1A2_RABIT (Elongation factor 1-alpha 2 OS=Oryctolagus cuniculus GN=EEF1A2 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.354e-12
Identity = 31/66 (46.97%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:  139 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEER 336
            G  K H+N+V IGHVD+GKSTT G +++  G +D RTI+K+EKEA +  + S+  A+++D  + ER
Sbjct:    2 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAER 67
[Close]
BLAST of CF503836 vs. ExPASy Swiss-Prot
Match: EF1A2_MOUSE (Elongation factor 1-alpha 2 OS=Mus musculus GN=Eef1a2 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.354e-12
Identity = 31/66 (46.97%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:  139 GNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEER 336
            G  K H+N+V IGHVD+GKSTT G +++  G +D RTI+K+EKEA +  + S+  A+++D  + ER
Sbjct:    2 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAER 67
The following BLAST results are available for this feature:
BLAST of CF503836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
EF1A_PUCGR1.354e-1248.48Elongation factor 1-alpha OS=Puccinia graminis GN=... [more]
EF1A_DANRE1.354e-1246.97Elongation factor 1-alpha OS=Danio rerio GN=eef1a ... [more]
EF1A_CHICK1.354e-1246.97Elongation factor 1-alpha 1 OS=Gallus gallus GN=EE... [more]
EF1A_CAEEL1.354e-1246.97Elongation factor 1-alpha OS=Caenorhabditis elegan... [more]
EF1A_ARTSA1.354e-1246.97Elongation factor 1-alpha OS=Artemia salina PE=1 S... [more]
EF1A_APIME1.354e-1246.97Elongation factor 1-alpha OS=Apis mellifera PE=3 S... [more]
EF1A3_HUMAN1.354e-1246.97Putative elongation factor 1-alpha-like 3 OS=Homo ... [more]
EF1A2_RAT1.354e-1246.97Elongation factor 1-alpha 2 OS=Rattus norvegicus G... [more]
EF1A2_RABIT1.354e-1246.97Elongation factor 1-alpha 2 OS=Oryctolagus cunicul... [more]
EF1A2_MOUSE1.354e-1246.97Elongation factor 1-alpha 2 OS=Mus musculus GN=Eef... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-323 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503836 ID=CF503836; Name=CF503836; organism=Citrus sinensis; type=EST; length=341bp
GAAGTTGAGGTGGTGGATAAGATGGAGGAAGATTCAGAGGAGGTGCAAGC
AGTATCCCAGCCTGTTCATCCTGAGCCTAAAGTGAAACACAAGGAAGTAT
CTGCGGTGGAAGATGCTGAATCTCAGCAAGAGACTGAAGGAAATAATAAG
CGACACTTGAATGTTGTATTTATTGGTCATGTTGATGCTGGAAAGTCTAC
CACTGGAGGCCAGATACTTTTTCTTAGTGGCCAGGTCGATGACCGTACAA
TTCAAAAATATGAGAAAGAAGCAAAGGATAAAAGTAGAGAAAGCTGGTAT
ATGGCGTATATTATGGACACTAATGAAGAGGAGAGGATCAA
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