CF503840

Overview
NameCF503840
Unique NameCF503840
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length430
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: DKGB_ECO57 (2,5-diketo-D-gluconic acid reductase B OS=Escherichia coli O157:H7 GN=dkgB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.593e-13
Identity = 39/99 (39.39%), Postives = 62/99 (62.63%), Query Frame = 1
Query:  133 IPSVGLGTWQSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            IP+ GLGT++    VV ++V  A++ GYR ID AQIY NE  +GL +     ++ V R +L+IT+K+W      + +  +L  +L+ L+ DY+DL L+H
Sbjct:    3 IPAFGLGTFRLKDDVVISSVKTALELGYRAIDTAQIYDNEAAVGLAI----AESGVPRHELYITTKIWIENLSKDKLIPSLKESLQKLRTDYVDLTLIH 97          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: Y1984_MYCSK (Uncharacterized oxidoreductase Mkms_1984 OS=Mycobacterium sp. (strain KMS) GN=Mkms_1984 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.265e-12
Identity = 40/105 (38.10%), Postives = 60/105 (57.14%), Query Frame = 1
Query:  115 LNTGAKIPSVGLGTWQSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            LN G  IP +GLG  +        +VAAA++AGYR ID A +YGNE  +G  +      + + RE++++T+KL  A        +A   +L  L +DY+DLYL+H
Sbjct:   16 LNDGHSIPVLGLGVGELSEAEAERSVAAALEAGYRLIDTAAVYGNEAAVGRAVNA----SGIPREEIYVTTKLAVADQGFGTSQDAARASLERLGLDYVDLYLIH 116          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: Y1938_MYCSS (Uncharacterized oxidoreductase Mmcs_1938 OS=Mycobacterium sp. (strain MCS) GN=Mmcs_1938 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.265e-12
Identity = 40/105 (38.10%), Postives = 60/105 (57.14%), Query Frame = 1
Query:  115 LNTGAKIPSVGLGTWQSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            LN G  IP +GLG  +        +VAAA++AGYR ID A +YGNE  +G  +      + + RE++++T+KL  A        +A   +L  L +DY+DLYL+H
Sbjct:   16 LNDGHSIPVLGLGVGELSEAEAERSVAAALEAGYRLIDTAAVYGNEAAVGRAVNA----SGIPREEIYVTTKLAVADQGFGTSQDAARASLERLGLDYVDLYLIH 116          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: Y1918_MYCSJ (Uncharacterized oxidoreductase Mjls_1918 OS=Mycobacterium sp. (strain JLS) GN=Mjls_1918 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.265e-12
Identity = 40/105 (38.10%), Postives = 60/105 (57.14%), Query Frame = 1
Query:  115 LNTGAKIPSVGLGTWQSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            LN G  IP +GLG  +        +VAAA++AGYR ID A +YGNE  +G  +      + + RE++++T+KL  A        +A   +L  L +DY+DLYL+H
Sbjct:   16 LNDGHSIPVLGLGVGELSESEAERSVAAALEAGYRLIDTAAVYGNEAAVGRAVNA----SGIPREEIYVTTKLAVADQGFGTSQDAARASLERLGLDYVDLYLIH 116          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: DKGB_YERPE (2,5-diketo-D-gluconic acid reductase B OS=Yersinia pestis GN=dkgB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.265e-12
Identity = 36/99 (36.36%), Postives = 63/99 (63.64%), Query Frame = 1
Query:  133 IPSVGLGTWQSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            IP  GLGT++    +V ++V+ A+  GYR ID AQIY NE  +G  +    +++ + R++L+IT+K+W A    + +  +L  +++ L+ DY+DL L+H
Sbjct:    3 IPVFGLGTFRLQDQIVIDSVSQALTLGYRAIDTAQIYENEAPVGQAI----QESGINRDELFITTKIWIANLSKDKLIPSLRESIQKLKTDYVDLTLIH 97          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: DKGB_ECOLI (2,5-diketo-D-gluconic acid reductase B OS=Escherichia coli (strain K12) GN=dkgB PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 4.265e-12
Identity = 38/99 (38.38%), Postives = 61/99 (61.62%), Query Frame = 1
Query:  133 IPSVGLGTWQSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            IP+ GLGT++    VV ++V  A++ GYR ID AQIY NE  +G  +     ++ V R +L+IT+K+W      + +  +L  +L+ L+ DY+DL L+H
Sbjct:    3 IPAFGLGTFRLKDDVVISSVITALELGYRAIDTAQIYDNEAAVGQAI----AESGVPRHELYITTKIWIENLSKDKLIPSLKESLQKLRTDYVDLTLIH 97          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: DKGB_SALTY (2,5-diketo-D-gluconic acid reductase B OS=Salmonella typhimurium GN=dkgB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.501e-12
Identity = 37/99 (37.37%), Postives = 60/99 (60.61%), Query Frame = 1
Query:  133 IPSVGLGTWQSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            IP+ GLGT++    VV  +V  A++ GYR +D AQIY NE  +G  +     ++ V R +L+IT+K+W      + +  +L  +L+ L+ DY+DL L+H
Sbjct:    3 IPAFGLGTFRLKDDVVIASVKTALELGYRAVDTAQIYDNEAAVGQAI----AESGVPRNELYITTKIWIENLSKDKLIPSLKESLKKLRTDYVDLTLIH 97          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: DKGB_SALTI (2,5-diketo-D-gluconic acid reductase B OS=Salmonella typhi GN=dkgB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.501e-12
Identity = 37/99 (37.37%), Postives = 60/99 (60.61%), Query Frame = 1
Query:  133 IPSVGLGTWQSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            IP+ GLGT++    VV  +V  A++ GYR +D AQIY NE  +G  +     ++ V R +L+IT+K+W      + +  +L  +L+ L+ DY+DL L+H
Sbjct:    3 IPAFGLGTFRLKDDVVIASVKTALELGYRAVDTAQIYDNEAAVGQAI----AESGVPRNELYITTKIWIENLSKDKLIPSLKESLKKLRTDYVDLTLIH 97          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: YOF5_CAEEL (Uncharacterized oxidoreductase ZK1290.5 OS=Caenorhabditis elegans GN=ZK1290.5 PE=2 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 3.610e-11
Identity = 41/107 (38.32%), Postives = 65/107 (60.75%), Query Frame = 1
Query:  112 VLNTGAKIPSVGLGTWQSDPGVVGNAVAAAIK-AGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            VL+   ++P +GLGT  S  G   +AV  +IK  GYR ID A+ YG EK++G+ +K    +  V RE++++++KLW      ++V  A   +   LQ DYLD+Y++H
Sbjct:    6 VLSNNVEMPLIGLGTTHSG-GYYHDAVLHSIKKCGYRLIDTAKRYGVEKQLGIAVK----NCSVPREEMFLSTKLW-PVDCGDEVYNAFQTSCEKLQTDYLDMYMIH 106          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: Y4205_MYCGI (Uncharacterized oxidoreductase Mflv_4205 OS=Mycobacterium gilvum (strain PYR-GCK) GN=Mflv_4205 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.715e-11
Identity = 39/105 (37.14%), Postives = 58/105 (55.24%), Query Frame = 1
Query:  115 LNTGAKIPSVGLGTWQSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            LN    +P +GLG  +        AV AA++AGYR ID A  YGNE  +G  +      + V R++L++T+KL       +   +AL  +L  L +DY+DLYL+H
Sbjct:   12 LNDDNTMPVIGLGVGELSDAETEQAVTAALEAGYRLIDTAAAYGNEAAVGRAIAA----SGVPRDELFVTTKLATEDAGFQSSQDALRASLERLGLDYVDLYLIH 112          
The following BLAST results are available for this feature:
BLAST of CF503840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
DKGB_ECO578.593e-1339.392,5-diketo-D-gluconic acid reductase B OS=Escheric... [more]
Y1984_MYCSK4.265e-1238.10Uncharacterized oxidoreductase Mkms_1984 OS=Mycoba... [more]
Y1938_MYCSS4.265e-1238.10Uncharacterized oxidoreductase Mmcs_1938 OS=Mycoba... [more]
Y1918_MYCSJ4.265e-1238.10Uncharacterized oxidoreductase Mjls_1918 OS=Mycoba... [more]
DKGB_YERPE4.265e-1236.362,5-diketo-D-gluconic acid reductase B OS=Yersinia... [more]
DKGB_ECOLI4.265e-1238.382,5-diketo-D-gluconic acid reductase B OS=Escheric... [more]
DKGB_SALTY9.501e-1237.372,5-diketo-D-gluconic acid reductase B OS=Salmonel... [more]
DKGB_SALTI9.501e-1237.372,5-diketo-D-gluconic acid reductase B OS=Salmonel... [more]
YOF5_CAEEL3.610e-1138.32Uncharacterized oxidoreductase ZK1290.5 OS=Caenorh... [more]
Y4205_MYCGI4.715e-1137.14Uncharacterized oxidoreductase Mflv_4205 OS=Mycoba... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-327 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503840 ID=CF503840; Name=CF503840; organism=Citrus sinensis; type=EST; length=430bp
GCCGGTGCCTGCTTTTACCTCTGGTCCACTCATTCGCTCACGCTTTTTTG
CTCATTGCTCTCTCTCTCTAACGCTTAGCTTTCGAAAATGGCAAATGAGA
TTCGACACTTCGTGCTGAACACCGGAGCCAAAATCCCGTCCGTTGGATTA
GGCACGTGGCAGTCTGATCCTGGTGTCGTCGGCAACGCCGTTGCTGCCGC
CATCAAGGCTGGATACCGACATATTGATTGTGCTCAAATTTACGGCAATG
AAAAGGAGATTGGTTTGGTGCTGAAGAAGTTTTTTGAAGATGCTGTTGTC
AAGCGTGAGGATTTGTGGATTACCTCTAAACTCTGGAATGCTTATCATGA
ACCAGAAGATGTACCAGAGGCATTGGACAGAACTTTGCGGGACTTACAGA
TTGACTACCTTGATCTATACCTTATGCACT
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