CF503840

Overview
NameCF503840
Unique NameCF503840
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length430
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: A1A1A_DANRE (Alcohol dehydrogenase [NADP+] A OS=Danio rerio GN=akr1a1a PE=2 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 3.250e-28
Identity = 57/106 (53.77%), Postives = 78/106 (73.58%), Query Frame = 1
Query:  115 LNTGAKIPSVGLGTWQSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVL-KKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            L+TG ++P+VGLGTW+S PG V  AV AA+  GYRHIDCA  Y NE+E+G  L ++      ++R+D+++TSKLWN  H P+DV EA  R+L DL++ YLDLYL+H
Sbjct:    7 LSTGQRMPTVGLGTWKSAPGQVKQAVLAALDCGYRHIDCAAAYSNEREVGEALTERLGPGKSLRRDDIFVTSKLWNTKHHPDDVEEACRRSLSDLRLSYLDLYLIH 112          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: ALDR_ENCCU (Aldose reductase OS=Encephalitozoon cuniculi GN=ECU01_0970 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 4.245e-28
Identity = 63/107 (58.88%), Postives = 79/107 (73.83%), Query Frame = 1
Query:  115 LNTGAKIPSVGLGTW-QSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHE-PEDVPEALDRTLRDLQIDYLDLYLMH 429
            LN G +IP+VGLGTW   D  V+  A+  A+  GYRHID A IYGNEK IG +LKK F++ VV+R+DL+ITSKLWN +H  PED    L R+L DLQ+DY+DLYL+H
Sbjct:    8 LNNGKEIPTVGLGTWGMEDEAVLEGAIRNALSLGYRHIDTAFIYGNEKMIGNILKKLFDEGVVQRKDLFITSKLWNTFHGCPED---GLRRSLNDLQMDYVDLYLIH 111          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: XYL1_CANSH (NAD(P)H-dependent D-xylose reductase OS=Candida shehatae GN=XYL1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.107e-27
Identity = 52/107 (48.60%), Postives = 80/107 (74.77%), Query Frame = 1
Query:  109 FVLNTGAKIPSVGLGTWQSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            F LN G ++PS+G G W+ D     + V  AIKAGYR  D A+ YGNE+E+G  +K+  ++ +V RE++++TSKLWN YH+P++V  AL++TL+DL++DY+DL+L+H
Sbjct:    9 FKLNNGLEMPSIGFGCWKLDKSTAADQVYNAIKAGYRLFDGAEDYGNEQEVGEGVKRAIDEGIVTREEIFLTSKLWNNYHDPKNVETALNKTLKDLKVDYVDLFLIH 115          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: ALD2_CRIGR (Aldose reductase-related protein 2 OS=Cricetulus griseus GN=AKR1B8 PE=1 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 2.107e-27
Identity = 59/105 (56.19%), Postives = 75/105 (71.43%), Query Frame = 1
Query:  115 LNTGAKIPSVGLGTWQSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            L+T AK+P VGLGTWQS PG V  AV  AI AGYRHIDCA  Y NE E+G  +++  ++  V+REDL+I SKLW    E + + EA  +TL DL++DYLDLYL+H
Sbjct:    7 LSTKAKMPIVGLGTWQSPPGQVKEAVKVAIDAGYRHIDCAYAYYNEHEVGEAIQEKIKEKAVRREDLFIVSKLWPTCFERKLLKEAFQKTLTDLKLDYLDLYLIH 111          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: AK1A1_CRIGR (Alcohol dehydrogenase [NADP+] (Fragment) OS=Cricetulus griseus GN=AKR1A1 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.751e-27
Identity = 58/97 (59.79%), Postives = 71/97 (73.20%), Query Frame = 1
Query:  142 VGLGTWQSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDA-VVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            +GLGTW+S+PG V  A+  A+  GYRHIDCA +YGNE EIG  LK+       V RE+L++TSKLWN  H PEDV  AL +TL DLQ++YLDLYLMH
Sbjct:    2 IGLGTWKSNPGQVKAAIKYALSVGYRHIDCAAVYGNEIEIGEALKENVGPGKAVPREELFVTSKLWNTKHHPEDVEAALRKTLADLQLEYLDLYLMH 98          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: YBN4_SCHPO (Uncharacterized oxidoreductase C8E4.04 OS=Schizosaccharomyces pombe GN=SPBC8E4.04 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.594e-27
Identity = 59/108 (54.63%), Postives = 75/108 (69.44%), Query Frame = 1
Query:  106 HFVLNTGAKIPSVGLGTWQSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            +F L  G KIPS+GLGTW+S      NAV AA+KAGYRHID A IYGNEKEIG    +   ++ V R D+W+TSKLW   H    VP AL++TL+DL ++Y+D YL+H
Sbjct:   14 YFTLPNGDKIPSIGLGTWRSGKDETKNAVCAALKAGYRHIDTAHIYGNEKEIG----EGIRESGVPRTDIWVTSKLWCNAHRAGLVPLALEKTLQDLNLEYIDAYLIH 117          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: XYL1_PICST (NAD(P)H-dependent D-xylose reductase OS=Pichia stipitis GN=XYL1 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 6.130e-27
Identity = 54/105 (51.43%), Postives = 75/105 (71.43%), Query Frame = 1
Query:  115 LNTGAKIPSVGLGTWQSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            LN+G  +P+VG G W+ D       +  AIK GYR  D A+ Y NEK +G  +KK  ++ +VKREDL++TSKLWN YH P++V +AL+RTL DLQ+DY+DL+L+H
Sbjct:    6 LNSGYDMPAVGFGCWKVDVDTCSEQIYRAIKTGYRLFDGAEDYANEKLVGAGVKKAIDEGIVKREDLFLTSKLWNNYHHPDNVEKALNRTLSDLQVDYVDLFLIH 110          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: ALD2_MOUSE (Aldose reductase-related protein 2 OS=Mus musculus GN=Akr1b8 PE=1 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 8.006e-27
Identity = 58/105 (55.24%), Postives = 75/105 (71.43%), Query Frame = 1
Query:  115 LNTGAKIPSVGLGTWQSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            L+T AK+P VGLGTW+S P  V  AV AAI AGYRHIDCA  Y NE E+G  +++  ++  V+REDL+I SKLW    E + + EA  +TL DL++DYLDLYL+H
Sbjct:    7 LSTKAKMPIVGLGTWKSPPNQVKEAVKAAIDAGYRHIDCAYAYCNENEVGEAIQEKIKEKAVQREDLFIVSKLWPTCFEKKLLKEAFQKTLTDLKLDYLDLYLIH 111          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: XYL1_PICGU (NADPH-dependent D-xylose reductase OS=Pichia guilliermondii GN=XYL1 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 1.046e-26
Identity = 51/105 (48.57%), Postives = 78/105 (74.29%), Query Frame = 1
Query:  115 LNTGAKIPSVGLGTWQSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            LN+G ++PSVG G W+ D     + +  AIK GYR  D A+ YGNEKE+G  + +  ++ +V R++L++ SKLWN++H+P++V +ALDRTL DL++DYLDL+L+H
Sbjct:    5 LNSGYEMPSVGFGCWKVDKATCADTIYNAIKVGYRLFDGAEDYGNEKEVGEGINRALDEGLVARDELFVVSKLWNSFHDPKNVEKALDRTLSDLKVDYLDLFLIH 109          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: XYL1_PACTA (NAD(P)H-dependent D-xylose reductase OS=Pachysolen tannophilus GN=XYL1 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.783e-26
Identity = 55/110 (50.00%), Postives = 78/110 (70.91%), Query Frame = 1
Query:  100 IRHFVLNTGAKIPSVGLGTWQSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            ++++ LN G KIP++G+G W+ +     + V AAIK GYR  DCA  YGNEKE+G  + +  +D +VKR+DL+ITSKLWN +H  E+V +AL ++L D  +DY DLYLMH
Sbjct:    3 LQYYTLNNGRKIPAIGMGCWKLENAA--DMVYAAIKEGYRLFDCACDYGNEKEVGEGINRAIKDGLVKRKDLFITSKLWNNFHAKENVKKALMKSLSDFNLDYFDLYLMH 110          
The following BLAST results are available for this feature:
BLAST of CF503840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
A1A1A_DANRE3.250e-2853.77Alcohol dehydrogenase [NADP+] A OS=Danio rerio GN=... [more]
ALDR_ENCCU4.245e-2858.88Aldose reductase OS=Encephalitozoon cuniculi GN=EC... [more]
XYL1_CANSH2.107e-2748.60NAD(P)H-dependent D-xylose reductase OS=Candida sh... [more]
ALD2_CRIGR2.107e-2756.19Aldose reductase-related protein 2 OS=Cricetulus g... [more]
AK1A1_CRIGR2.751e-2759.79Alcohol dehydrogenase [NADP+] (Fragment) OS=Cricet... [more]
YBN4_SCHPO3.594e-2754.63Uncharacterized oxidoreductase C8E4.04 OS=Schizosa... [more]
XYL1_PICST6.130e-2751.43NAD(P)H-dependent D-xylose reductase OS=Pichia sti... [more]
ALD2_MOUSE8.006e-2755.24Aldose reductase-related protein 2 OS=Mus musculus... [more]
XYL1_PICGU1.046e-2648.57NADPH-dependent D-xylose reductase OS=Pichia guill... [more]
XYL1_PACTA1.783e-2650.00NAD(P)H-dependent D-xylose reductase OS=Pachysolen... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-327 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503840 ID=CF503840; Name=CF503840; organism=Citrus sinensis; type=EST; length=430bp
GCCGGTGCCTGCTTTTACCTCTGGTCCACTCATTCGCTCACGCTTTTTTG
CTCATTGCTCTCTCTCTCTAACGCTTAGCTTTCGAAAATGGCAAATGAGA
TTCGACACTTCGTGCTGAACACCGGAGCCAAAATCCCGTCCGTTGGATTA
GGCACGTGGCAGTCTGATCCTGGTGTCGTCGGCAACGCCGTTGCTGCCGC
CATCAAGGCTGGATACCGACATATTGATTGTGCTCAAATTTACGGCAATG
AAAAGGAGATTGGTTTGGTGCTGAAGAAGTTTTTTGAAGATGCTGTTGTC
AAGCGTGAGGATTTGTGGATTACCTCTAAACTCTGGAATGCTTATCATGA
ACCAGAAGATGTACCAGAGGCATTGGACAGAACTTTGCGGGACTTACAGA
TTGACTACCTTGATCTATACCTTATGCACT
back to top