CF503840

Overview
NameCF503840
Unique NameCF503840
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length430
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: CRO_RANCA (Rho crystallin OS=Rana catesbeiana PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 1.323e-21
Identity = 52/108 (48.15%), Postives = 68/108 (62.96%), Query Frame = 1
Query:  115 LNTGAKIPSVGLGTWQSDP---GVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            LN G  +P +GLGT+ +      +   AV  AI  GYRHIDCA I GNE  IG  ++    D  VKRED++ T KLW  Y  P+ V + L+R+LRD+ +DYLDL+LMH
Sbjct:   11 LNDGNMMPILGLGTYAAPDVPKSLAEEAVKTAIDVGYRHIDCAFITGNEMHIGNGIRSKISDGTVKREDIFYTGKLWCTYFSPDMVRKGLERSLRDVGMDYLDLFLMH 118          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: AKC1H_MOUSE (Aldo-keto reductase family 1 member C18 OS=Mus musculus GN=Akr1c18 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 1.323e-21
Identity = 50/117 (42.74%), Postives = 75/117 (64.10%), Query Frame = 1
Query:   88 MANEIRHFVLNTGAKIPSVGLGTWQSDPGVVGNAVAA---AIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            M ++I+   LN G  IP +G GT+ ++  +   ++ +   AI  G+ HIDC+ +Y NE+EIG  +    ED  VKRED++ TSKLW+  H PE V  +L+ +LR L +DY+DLYL+H
Sbjct:    1 MNSKIQKIELNDGHSIPVLGFGTYATEEHLKKKSMESTKIAIDVGFCHIDCSHLYQNEEEIGQAILSKIEDGTVKREDIFYTSKLWSTSHRPELVRPSLENSLRKLNLDYVDLYLIH 117          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: AK1C2_HUMAN (Aldo-keto reductase family 1 member C2 OS=Homo sapiens GN=AKR1C2 PE=1 SV=3)

HSP 1 Score: 101.679 bits (252), Expect = 1.323e-21
Identity = 50/108 (46.30%), Postives = 72/108 (66.67%), Query Frame = 1
Query:  115 LNTGAKIPSVGLGTW---QSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            LN G  +P +G GT+   +        AV  AI+AG+ HID A +Y NE+++GL ++    D  VKRED++ TSKLW+  H PE V  AL+R+L++LQ+DY+DLYL+H
Sbjct:   10 LNDGHFMPVLGFGTYAPAEVPKSKALEAVKLAIEAGFHHIDSAHVYNNEEQVGLAIRSKIADGSVKREDIFYTSKLWSNSHRPELVRPALERSLKNLQLDYVDLYLIH 117          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: PE2R_RABIT (Prostaglandin-E(2) 9-reductase OS=Oryctolagus cuniculus GN=AKR1C5 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.727e-21
Identity = 51/117 (43.59%), Postives = 74/117 (63.25%), Query Frame = 1
Query:   88 MANEIRHFVLNTGAKIPSVGLGTWQSDPGVVGNAVAA---AIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            M  + +   L+ G  IP +G GT+  +      A+ A   AI AG+RHID A  Y NEKE+GL ++    D  VKRED++ TSKLW  +H PE V  +L+ +L++LQ+DY+DLY++H
Sbjct:    1 MDPKFQRVALSDGHFIPVLGFGTYAPEEVPKSKAMEATKIAIDAGFRHIDSAYFYKNEKEVGLAIRSKIADGTVKREDIFYTSKLWCTFHRPELVRPSLEDSLKNLQLDYVDLYIIH 117          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: AK1C1_MACFU (Aldo-keto reductase family 1 member C1 homolog OS=Macaca fuscata fuscata GN=AKR1C1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.727e-21
Identity = 51/108 (47.22%), Postives = 71/108 (65.74%), Query Frame = 1
Query:  115 LNTGAKIPSVGLGTWQSDPGVVGNAVAA---AIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            LN G  +P +G GT+         A+ A   AI+AG+RHID A +Y NE+ +GL ++    D  VKRED++ TSKLW   H PE V  AL+R+L++LQ+DY+DLYL+H
Sbjct:   10 LNDGHFMPVLGFGTYAPAEVPKNKAIEATKLAIEAGFRHIDSAHLYNNEEYVGLAIRSKIADGTVKREDIFYTSKLWCNSHRPEFVRPALERSLKNLQLDYVDLYLIH 117          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: AK1C1_HUMAN (Aldo-keto reductase family 1 member C1 OS=Homo sapiens GN=AKR1C1 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.256e-21
Identity = 51/108 (47.22%), Postives = 72/108 (66.67%), Query Frame = 1
Query:  115 LNTGAKIPSVGLGTWQSDPGVVGNAVAA---AIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            LN G  +P +G GT+         A+ A   AI+AG+RHID A +Y NE+++GL ++    D  VKRED++ TSKLW   H PE V  AL+R+L++LQ+DY+DLYL+H
Sbjct:   10 LNDGHFMPVLGFGTYAPAEVPKSKALEATKLAIEAGFRHIDSAHLYNNEEQVGLAIRSKIADGSVKREDIFYTSKLWCNSHRPELVRPALERSLKNLQLDYVDLYLIH 117          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: AK1C1_MACFA (Aldo-keto reductase family 1 member C1 homolog OS=Macaca fascicularis GN=AKR1C1 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.947e-21
Identity = 51/108 (47.22%), Postives = 71/108 (65.74%), Query Frame = 1
Query:  115 LNTGAKIPSVGLGTWQSDPGVVGNAVAA---AIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            LN G  +P +G GT+         A+ A   AI+AG+RHID A +Y NE+ +GL ++    D  VKRED++ TSKLW   H PE V  AL+R+L++LQ+DY+DLYL+H
Sbjct:   10 LNDGHFMPVLGFGTYAPAEVPKNKALEATKLAIEAGFRHIDSAHLYNNEEYVGLAIRSKIADGTVKREDIFYTSKLWCNSHRPEFVRPALERSLKNLQLDYVDLYLIH 117          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: AK1D1_RAT (3-oxo-5-beta-steroid 4-dehydrogenase OS=Rattus norvegicus GN=Akr1d1 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.848e-21
Identity = 50/110 (45.45%), Postives = 70/110 (63.64%), Query Frame = 1
Query:  106 HFVLNTGAKIPSVGLGTWQSD---PGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLM 426
            H  LN G  IP +GLGT+      PG    AV  AI  GYRHID A +Y NE E+G  +++   +  VKRE+++   KLW+  H+PE V  AL+RTL+ L++DY+DLY++
Sbjct:    9 HIPLNDGNSIPIIGLGTYSDPRPVPGKTFIAVKTAIDEGYRHIDGAYVYRNEHEVGEAIREKVAEGKVKREEIFYCGKLWSTDHDPEMVRPALERTLQTLKLDYIDLYII 118          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: DHB5_MOUSE (Estradiol 17 beta-dehydrogenase 5 OS=Mus musculus GN=Akr1c6 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 5.026e-21
Identity = 50/108 (46.30%), Postives = 69/108 (63.89%), Query Frame = 1
Query:  115 LNTGAKIPSVGLGTWQSDPGVVGNAVAA---AIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            L+ G  IP +G GT+         A  A   AI AG+RHID A +Y NEKE+GL ++    D  VKRED++ TSK+W  +H PE V   L+++L+ LQ+DY+DLYL+H
Sbjct:   10 LSDGHFIPILGFGTYAPQEVPKSKATEATKIAIDAGFRHIDSASMYQNEKEVGLAIRSKIADGTVKREDIFYTSKVWCTFHRPELVRVCLEQSLKQLQLDYVDLYLIH 117          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: AK1CN_HORSE (Aldo-keto reductase family 1 member C23 OS=Equus caballus GN=AKR1C23 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.564e-21
Identity = 50/108 (46.30%), Postives = 72/108 (66.67%), Query Frame = 1
Query:  115 LNTGAKIPSVGLGTWQSDPGVVGNAVAA---AIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            LN G  I ++G GT+  +      AV A   AI AG+RHIDCA +Y NEKE+GL ++   +D  VKRED++ TSKLW      + V  AL+++L++LQ+DY+DLY++H
Sbjct:   10 LNDGHFIHALGFGTYAPNEVPKSKAVEATKSAIDAGFRHIDCAHLYDNEKEVGLAIRSKIQDGTVKREDIFCTSKLWATSLRLQLVRPALEKSLKNLQLDYVDLYIIH 117          
The following BLAST results are available for this feature:
BLAST of CF503840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
CRO_RANCA1.323e-2148.15Rho crystallin OS=Rana catesbeiana PE=1 SV=2[more]
AKC1H_MOUSE1.323e-2142.74Aldo-keto reductase family 1 member C18 OS=Mus mus... [more]
AK1C2_HUMAN1.323e-2146.30Aldo-keto reductase family 1 member C2 OS=Homo sap... [more]
PE2R_RABIT1.727e-2143.59Prostaglandin-E(2) 9-reductase OS=Oryctolagus cuni... [more]
AK1C1_MACFU1.727e-2147.22Aldo-keto reductase family 1 member C1 homolog OS=... [more]
AK1C1_HUMAN2.256e-2147.22Aldo-keto reductase family 1 member C1 OS=Homo sap... [more]
AK1C1_MACFA2.947e-2147.22Aldo-keto reductase family 1 member C1 homolog OS=... [more]
AK1D1_RAT3.848e-2145.453-oxo-5-beta-steroid 4-dehydrogenase OS=Rattus nor... [more]
DHB5_MOUSE5.026e-2146.30Estradiol 17 beta-dehydrogenase 5 OS=Mus musculus ... [more]
AK1CN_HORSE6.564e-2146.30Aldo-keto reductase family 1 member C23 OS=Equus c... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-327 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503840 ID=CF503840; Name=CF503840; organism=Citrus sinensis; type=EST; length=430bp
GCCGGTGCCTGCTTTTACCTCTGGTCCACTCATTCGCTCACGCTTTTTTG
CTCATTGCTCTCTCTCTCTAACGCTTAGCTTTCGAAAATGGCAAATGAGA
TTCGACACTTCGTGCTGAACACCGGAGCCAAAATCCCGTCCGTTGGATTA
GGCACGTGGCAGTCTGATCCTGGTGTCGTCGGCAACGCCGTTGCTGCCGC
CATCAAGGCTGGATACCGACATATTGATTGTGCTCAAATTTACGGCAATG
AAAAGGAGATTGGTTTGGTGCTGAAGAAGTTTTTTGAAGATGCTGTTGTC
AAGCGTGAGGATTTGTGGATTACCTCTAAACTCTGGAATGCTTATCATGA
ACCAGAAGATGTACCAGAGGCATTGGACAGAACTTTGCGGGACTTACAGA
TTGACTACCTTGATCTATACCTTATGCACT
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