CF503840

Overview
NameCF503840
Unique NameCF503840
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length430
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: AK1D1_HUMAN (3-oxo-5-beta-steroid 4-dehydrogenase OS=Homo sapiens GN=AKR1D1 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.112e-19
Identity = 50/109 (45.87%), Postives = 68/109 (62.39%), Query Frame = 1
Query:  115 LNTGAKIPSVGLGTWQSDP-----GVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLM 426
            L+ G  IP +GLGT+ S+P     G    +V  AI  GYRHID A IY NE E+G  +++   +  V+RED++   KLW   H PE V   L+RTLR LQ+DY+DLY++
Sbjct:   12 LSDGNSIPIIGLGTY-SEPKSTPKGACATSVKVAIDTGYRHIDGAYIYQNEHEVGEAIREKIAEGKVRREDIFYCGKLWATNHVPEMVRPTLERTLRVLQLDYVDLYII 119          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: DIDH_RAT (3-alpha-hydroxysteroid dehydrogenase OS=Rattus norvegicus GN=Akr1c9 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.758e-19
Identity = 46/108 (42.59%), Postives = 66/108 (61.11%), Query Frame = 1
Query:  115 LNTGAKIPSVGLGTWQSDPGVVGNAVAA---AIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            LN G  IP +G GT   +       + A   AI  G+RH D A +Y  E+E+G  ++   ED  VKRED++ TSKLW+ +H PE V   L++TL+  Q+DY+DLY++H
Sbjct:   10 LNDGNFIPVLGFGTTVPEKVAKDEVIKATKIAIDNGFRHFDSAYLYEVEEEVGQAIRSKIEDGTVKREDIFYTSKLWSTFHRPELVRTCLEKTLKSTQLDYVDLYIIH 117          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: PGFS1_BOVIN (Prostaglandin F synthase 1 OS=Bos taurus PE=1 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 3.602e-19
Identity = 46/108 (42.59%), Postives = 71/108 (65.74%), Query Frame = 1
Query:  115 LNTGAKIPSVGLGTWQSDPGVVGNAVAA---AIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            LN G  IP +G GT+  +      A+ A   AI+ G+RH+D A +Y NE+++G  ++    D  VKRED++ TSKLW    +PE V  AL+++L++LQ+DY+DLY++H
Sbjct:   10 LNDGHFIPVLGFGTYAPEEVPKSEALEATKFAIEVGFRHVDSAHLYQNEEQVGQAIRSKIADGTVKREDIFYTSKLWCNSLQPELVRPALEKSLQNLQLDYVDLYIIH 117          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: DDBX_BOVIN (Dihydrodiol dehydrogenase 3 OS=Bos taurus PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.704e-19
Identity = 47/108 (43.52%), Postives = 69/108 (63.89%), Query Frame = 1
Query:  115 LNTGAKIPSVGLGTWQSDPGVVGNAVAA---AIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            LN G  IP +G GT+         A+     AI+AG+RHID A +Y NE+++G  ++    D  VKRED++ TSKLW+    PE V  AL+++L +LQ+DY+DLY++H
Sbjct:   10 LNDGHFIPVLGFGTFAPREVPKSEALEVTKFAIEAGFRHIDSAHLYQNEEQVGQAIRSKIADGTVKREDIFYTSKLWSTSLRPELVRPALEKSLNNLQLDYVDLYIIH 117          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: AK1CD_MOUSE (Aldo-keto reductase family 1 member C13 OS=Mus musculus GN=Akr1c13 PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 6.144e-19
Identity = 49/108 (45.37%), Postives = 69/108 (63.89%), Query Frame = 1
Query:  115 LNTGAKIPSVGLGTWQSDPGVVGNAVAAAIKA---GYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            LN G  IP++G GT++        ++ AA  A   GYRH+D A  Y  E+EIG  ++   +  VVKREDL+IT+KLW     PE V  AL+++L+ LQ+DY+DLY+MH
Sbjct:   10 LNDGHLIPALGFGTYKPKEVPKSKSLEAACLALDVGYRHVDTAYAYQVEEEIGQAIQSKIKAGVVKREDLFITTKLWCTCFRPELVKPALEKSLKKLQLDYVDLYIMH 117          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: PGFS2_BOVIN (Prostaglandin F synthase 2 OS=Bos taurus PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.048e-18
Identity = 45/107 (42.06%), Postives = 70/107 (65.42%), Query Frame = 1
Query:  118 NTGAKIPSVGLGTWQSDPGVVGNAVAA---AIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            N G  IP +G GT+  +      A+ A   AI+ G+RH+D A +Y NE+++G  ++    D  VKRED++ TSKLW    +PE V  AL+++L++LQ+DY+DLY++H
Sbjct:   11 NDGHFIPVLGFGTYAPEEVPKSEALEATKFAIEVGFRHVDSAHLYQNEEQVGQAIRSKIADGTVKREDIFYTSKLWCNSLQPELVRPALEKSLQNLQLDYVDLYIIH 117          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: P100_LEIMA (Probable reductase OS=Leishmania major GN=P100/11E PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 1.048e-18
Identity = 50/106 (47.17%), Postives = 66/106 (62.26%), Query Frame = 1
Query:  115 LNTGAKIPSVGLGTWQSDPG-VVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            L+ G K+P  GLG WQS  G V  NAV  A+ AGYRHID A IY NE+ +G  L+     + V RED++IT+KLWN     E    A + + + L +DY+DLYL+H
Sbjct:   11 LSNGVKMPQFGLGVWQSPAGEVTENAVNWALCAGYRHIDTAAIYKNEESVGAGLRA----SGVPREDVFITTKLWNTEQGYESTLAAFEESRQKLGVDYIDLYLIH 112          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: YTBE_BACSU (Uncharacterized oxidoreductase ytbE OS=Bacillus subtilis GN=ytbE PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.369e-18
Identity = 50/106 (47.17%), Postives = 69/106 (65.09%), Query Frame = 1
Query:  115 LNTGAKIPSVGLGTWQSDPGV-VGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            L+ G ++P  GLG +Q + G  + NAV  AI  GYR ID A IYGNE  +G  +++  E+A + REDL+ITSK+WNA    E+   A + +L  L +DYLDLYL+H
Sbjct:   11 LHNGVEMPWFGLGVFQVEEGSELVNAVKTAIVHGYRSIDTAAIYGNEAGVGEGIREGIEEAGISREDLFITSKVWNADLGYEETLAAFETSLSKLGLDYLDLYLIH 116          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: Y2408_MYCS2 (Uncharacterized oxidoreductase MSMEG_2408 OS=Mycobacterium smegmatis GN=MSMEG_2408 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.369e-18
Identity = 48/105 (45.71%), Postives = 65/105 (61.90%), Query Frame = 1
Query:  115 LNTGAKIPSVGLGTWQSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            LN G  IP VGLG WQ+       AVAAA++AGYRHID A  Y NE E G    +   ++ V RED+++ +KLWN+    +    A D +++ L +DYLDLYL+H
Sbjct:    7 LNDGNSIPQVGLGVWQTPAEDTERAVAAALQAGYRHIDTAAAYRNETETG----RAIANSGVPREDIFLVTKLWNSDQGYDATLAAFDASVQRLGVDYLDLYLIH 107          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: XYL1_ASPNG (NAD(P)H-dependent D-xylose reductase OS=Aspergillus niger GN=xyrA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.369e-18
Identity = 45/105 (42.86%), Postives = 64/105 (60.95%), Query Frame = 1
Query:  115 LNTGAKIPSVGLGTWQSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            LN+G  +P VG G W+ +     + +  AIK GYR  D A  YGNE E G  + +  +D +VKRE+L+I SKLWN++H+ + V     + L D  IDY DLY++H
Sbjct:    8 LNSGYDMPLVGFGLWKVNNDTCADQIYHAIKEGYRLFDGACDYGNEVEAGQGIARAIKDGLVKREELFIVSKLWNSFHDGDRVEPICRKQLADWGIDYFDLYIVH 112          
The following BLAST results are available for this feature:
BLAST of CF503840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
AK1D1_HUMAN2.112e-1945.873-oxo-5-beta-steroid 4-dehydrogenase OS=Homo sapie... [more]
DIDH_RAT2.758e-1942.593-alpha-hydroxysteroid dehydrogenase OS=Rattus nor... [more]
PGFS1_BOVIN3.602e-1942.59Prostaglandin F synthase 1 OS=Bos taurus PE=1 SV=3[more]
DDBX_BOVIN4.704e-1943.52Dihydrodiol dehydrogenase 3 OS=Bos taurus PE=2 SV=... [more]
AK1CD_MOUSE6.144e-1945.37Aldo-keto reductase family 1 member C13 OS=Mus mus... [more]
PGFS2_BOVIN1.048e-1842.06Prostaglandin F synthase 2 OS=Bos taurus PE=2 SV=1[more]
P100_LEIMA1.048e-1847.17Probable reductase OS=Leishmania major GN=P100/11E... [more]
YTBE_BACSU1.369e-1847.17Uncharacterized oxidoreductase ytbE OS=Bacillus su... [more]
Y2408_MYCS21.369e-1845.71Uncharacterized oxidoreductase MSMEG_2408 OS=Mycob... [more]
XYL1_ASPNG1.369e-1842.86NAD(P)H-dependent D-xylose reductase OS=Aspergillu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-327 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503840 ID=CF503840; Name=CF503840; organism=Citrus sinensis; type=EST; length=430bp
GCCGGTGCCTGCTTTTACCTCTGGTCCACTCATTCGCTCACGCTTTTTTG
CTCATTGCTCTCTCTCTCTAACGCTTAGCTTTCGAAAATGGCAAATGAGA
TTCGACACTTCGTGCTGAACACCGGAGCCAAAATCCCGTCCGTTGGATTA
GGCACGTGGCAGTCTGATCCTGGTGTCGTCGGCAACGCCGTTGCTGCCGC
CATCAAGGCTGGATACCGACATATTGATTGTGCTCAAATTTACGGCAATG
AAAAGGAGATTGGTTTGGTGCTGAAGAAGTTTTTTGAAGATGCTGTTGTC
AAGCGTGAGGATTTGTGGATTACCTCTAAACTCTGGAATGCTTATCATGA
ACCAGAAGATGTACCAGAGGCATTGGACAGAACTTTGCGGGACTTACAGA
TTGACTACCTTGATCTATACCTTATGCACT
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