CF503840

Overview
NameCF503840
Unique NameCF503840
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length430
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: ARA1_YEAST (D-arabinose dehydrogenase [NAD(P)+] heavy chain OS=Saccharomyces cerevisiae GN=ARA1 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.793e-18
Identity = 48/110 (43.64%), Postives = 69/110 (62.73%), Query Frame = 1
Query:  106 HFVLNTGAKIPSVGLGTWQSDPGVVGN--AVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            +F LN G +IP++GLGT      +     AV AAIKAGYRHID A  Y  E  +G  +K+  ED  +KREDL+IT+K+W      ++V  +L+ +L+ L ++Y+DL L H
Sbjct:   24 YFSLNNGVRIPALGLGTANPHEKLAETKQAVKAAIKAGYRHIDTAWAYETEPFVGEAIKELLEDGSIKREDLFITTKVWPVLW--DEVDRSLNESLKALGLEYVDLLLQH 131          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: Y1985_MYCSK (Uncharacterized oxidoreductase Mkms_1985 OS=Mycobacterium sp. (strain KMS) GN=Mkms_1985 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.159e-17
Identity = 44/105 (41.90%), Postives = 64/105 (60.95%), Query Frame = 1
Query:  115 LNTGAKIPSVGLGTWQSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            LN G  IP VGLG WQ+ P     AVAAA+ AGYRH+D A  YGNE++ G  + +    + + R  +++ +KLWN+    +    A + ++  L +DYLDLYL+H
Sbjct:    8 LNDGNSIPQVGLGVWQTPPEDTERAVAAALAAGYRHVDTAAAYGNEEQTGRAIAQ----SGLDRSQVYLVTKLWNSEQGYDATLAAFEASVDRLGVDYLDLYLIH 108          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: Y1919_MYCSJ (Uncharacterized oxidoreductase Mjls_1919 OS=Mycobacterium sp. (strain JLS) GN=Mjls_1919 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.159e-17
Identity = 44/105 (41.90%), Postives = 64/105 (60.95%), Query Frame = 1
Query:  115 LNTGAKIPSVGLGTWQSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            LN G  IP VGLG WQ+ P     AVAAA+ AGYRH+D A  YGNE++ G  + +    + + R  +++ +KLWN+    +    A + ++  L +DYLDLYL+H
Sbjct:    8 LNDGNSIPQVGLGVWQTPPEDTERAVAAALAAGYRHVDTAAAYGNEEQTGRAIAQ----SGLDRSQVYLVTKLWNSEQGYDATLAAFEASVDRLGVDYLDLYLIH 108          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: DKGA_CORSC (2,5-diketo-D-gluconic acid reductase A OS=Corynebacterium sp. (strain ATCC 31090) GN=dkgA PE=1 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 1.159e-17
Identity = 44/106 (41.51%), Postives = 65/106 (61.32%), Query Frame = 1
Query:  112 VLNTGAKIPSVGLGTWQSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            VLN G  IP +G G ++  P     AV  A++ GYRHID A IYGNE+ +G  +      + + R+DL+IT+KLWN  H+ ++   A+  +L  L +D +DLYL+H
Sbjct:    7 VLNDGNSIPQLGYGVFKVPPADTQRAVEEALEVGYRHIDTAAIYGNEEGVGAAIAA----SGIARDDLFITTKLWNDRHDGDEPAAAIAESLAKLALDQVDLYLVH 108          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: AK1D1_RABIT (3-oxo-5-beta-steroid 4-dehydrogenase OS=Oryctolagus cuniculus GN=AKR1D1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.159e-17
Identity = 47/109 (43.12%), Postives = 66/109 (60.55%), Query Frame = 1
Query:  115 LNTGAKIPSVGLGTWQSDP-----GVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLM 426
            L  G  IP +GLGT+ S+P     G    +V  AI  GYRHID A IY NE E+G   ++   +  V+RED++   KLW   H+P  V   L+RTL+ L++DY+DLY++
Sbjct:   12 LGDGNSIPIIGLGTY-SEPKTTPKGSCATSVKIAIDTGYRHIDGAYIYQNEHEVGETFREKIAEGKVRREDIFYCGKLWATNHDPVMVRPTLERTLKVLKLDYIDLYII 119          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: DKGA_ECOLI (2,5-diketo-D-gluconic acid reductase A OS=Escherichia coli (strain K12) GN=dkgA PE=1 SV=3)

HSP 1 Score: 87.8113 bits (216), Expect = 1.976e-17
Identity = 49/105 (46.67%), Postives = 66/105 (62.86%), Query Frame = 1
Query:  115 LNTGAKIPSVGLGTWQSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            L  G  +P +GLG WQ+    V  A+  A++ GYR ID A  Y NE+ +G  LK    +A V RE+L+IT+KLWN  H+     EAL  +L+ LQ+DY+DLYLMH
Sbjct:    9 LQDGNVMPQLGLGVWQASNEEVITAIQKALEVGYRSIDTAAAYKNEEGVGKALK----NASVNREELFITTKLWNDDHKRP--REALLDSLKKLQLDYIDLYLMH 107          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: DKGA_YERPE (2,5-diketo-D-gluconic acid reductase A OS=Yersinia pestis GN=dkgA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.403e-17
Identity = 48/106 (45.28%), Postives = 68/106 (64.15%), Query Frame = 1
Query:  115 LNTGAKIPSVGLGTWQSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWN-AYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            L  G  +P +GLG WQ+       AV+ A++ GYR ID A IY NE+ +G  LK     A V R++L+IT+KLWN   H P+   +AL+ +L+ LQ+DY+DLYL+H
Sbjct:    9 LYDGRLMPQLGLGVWQASIQETELAVSKALEVGYRSIDTAAIYKNEEGVGKALKA----AAVARDELFITTKLWNDDQHNPQ---QALETSLQKLQLDYVDLYLIH 107          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: DKGA_ECO57 (2,5-diketo-D-gluconic acid reductase A OS=Escherichia coli O157:H7 GN=dkgA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.510e-17
Identity = 48/105 (45.71%), Postives = 64/105 (60.95%), Query Frame = 1
Query:  115 LNTGAKIPSVGLGTWQSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            L  G  +P +GLG WQ+    V  A+  A++ GYR  D A  Y NE+ +G  LK    +A V RE+L+IT+KLWN  H      EAL  +L+ LQ+DY+DLYLMH
Sbjct:    9 LQDGNVMPQLGLGVWQASNEEVITAIQKALEVGYRSFDTAAAYKNEEGVGKALK----NASVNREELFITTKLWNDDHNRP--REALLDSLKKLQLDYIDLYLMH 107          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: I3ACR_SCHPO (NAD/NADP-dependent indole-3-acetaldehyde reductase OS=Schizosaccharomyces pombe GN=SPAC19G12.09 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.809e-17
Identity = 45/105 (42.86%), Postives = 70/105 (66.67%), Query Frame = 1
Query:  133 IPSVGLGT--WQSDPGVVGNAVAAAIK----AGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            +P+ G+GT  ++ + G +   +  ++K    AG+ HIDCA++YGNE+E+G+ LK    +A V R  L+ITSK+    H  +++PEAL+ +LR L  DYLDLYL+H
Sbjct:   12 VPAYGVGTALFKKEKGEINRTIVDSVKNALAAGFIHIDCAEVYGNEEEVGVALK----EANVPRSKLFITSKV---MHNVDNIPEALNESLRKLGTDYLDLYLLH 109          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: DKGA_SALTY (2,5-diketo-D-gluconic acid reductase A OS=Salmonella typhimurium GN=dkgA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.809e-17
Identity = 48/105 (45.71%), Postives = 65/105 (61.90%), Query Frame = 1
Query:  115 LNTGAKIPSVGLGTWQSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            L  G  +P +GLG W++    V  A+  A++ GYR ID A  Y NE+ +G  LK     A V RE+L+IT+KLWN   + +   EAL  +L+ LQ+DYLDLYLMH
Sbjct:    9 LQDGNVMPQLGLGVWKASNEEVIAAIHKALEVGYRSIDTATAYQNEEGVGKALKA----ASVAREELFITTKLWN--DDQKRPREALQESLKKLQLDYLDLYLMH 107          
The following BLAST results are available for this feature:
BLAST of CF503840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
ARA1_YEAST6.793e-1843.64D-arabinose dehydrogenase [NAD(P)+] heavy chain OS... [more]
Y1985_MYCSK1.159e-1741.90Uncharacterized oxidoreductase Mkms_1985 OS=Mycoba... [more]
Y1919_MYCSJ1.159e-1741.90Uncharacterized oxidoreductase Mjls_1919 OS=Mycoba... [more]
DKGA_CORSC1.159e-1741.512,5-diketo-D-gluconic acid reductase A OS=Coryneba... [more]
AK1D1_RABIT1.159e-1743.123-oxo-5-beta-steroid 4-dehydrogenase OS=Oryctolagu... [more]
DKGA_ECOLI1.976e-1746.672,5-diketo-D-gluconic acid reductase A OS=Escheric... [more]
DKGA_YERPE4.403e-1745.282,5-diketo-D-gluconic acid reductase A OS=Yersinia... [more]
DKGA_ECO577.510e-1745.712,5-diketo-D-gluconic acid reductase A OS=Escheric... [more]
I3ACR_SCHPO9.809e-1742.86NAD/NADP-dependent indole-3-acetaldehyde reductase... [more]
DKGA_SALTY9.809e-1745.712,5-diketo-D-gluconic acid reductase A OS=Salmonel... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-327 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503840 ID=CF503840; Name=CF503840; organism=Citrus sinensis; type=EST; length=430bp
GCCGGTGCCTGCTTTTACCTCTGGTCCACTCATTCGCTCACGCTTTTTTG
CTCATTGCTCTCTCTCTCTAACGCTTAGCTTTCGAAAATGGCAAATGAGA
TTCGACACTTCGTGCTGAACACCGGAGCCAAAATCCCGTCCGTTGGATTA
GGCACGTGGCAGTCTGATCCTGGTGTCGTCGGCAACGCCGTTGCTGCCGC
CATCAAGGCTGGATACCGACATATTGATTGTGCTCAAATTTACGGCAATG
AAAAGGAGATTGGTTTGGTGCTGAAGAAGTTTTTTGAAGATGCTGTTGTC
AAGCGTGAGGATTTGTGGATTACCTCTAAACTCTGGAATGCTTATCATGA
ACCAGAAGATGTACCAGAGGCATTGGACAGAACTTTGCGGGACTTACAGA
TTGACTACCTTGATCTATACCTTATGCACT
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