CF503846

Overview
NameCF503846
Unique NameCF503846
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length269
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503846 vs. ExPASy Swiss-Prot
Match: TCTP_SOYBN (Translationally-controlled tumor protein homolog OS=Glycine max GN=TCTP PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.123e-14
Identity = 36/41 (87.80%), Postives = 39/41 (95.12%), Query Frame = 2
Query:   77 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAL 199
            MLVYQDLLTGDELLSDSF YKE ENG+LWEVEGKWVV+GA+
Sbjct:    1 MLVYQDLLTGDELLSDSFRYKEIENGMLWEVEGKWVVKGAV 41          
BLAST of CF503846 vs. ExPASy Swiss-Prot
Match: TCTP_CUCME (Translationally-controlled tumor protein homolog OS=Cucumis melo GN=TCTP PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.123e-14
Identity = 34/41 (82.93%), Postives = 40/41 (97.56%), Query Frame = 2
Query:   77 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAL 199
            MLVYQDL++GDELLSDSFPYKE ENG++WEVEGKWVV+GA+
Sbjct:    1 MLVYQDLVSGDELLSDSFPYKEIENGMIWEVEGKWVVKGAV 41          
BLAST of CF503846 vs. ExPASy Swiss-Prot
Match: TCTP_MEDSA (Translationally-controlled tumor protein homolog OS=Medicago sativa GN=TCTP PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.915e-14
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 2
Query:   77 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAL 199
            MLVYQDLLTGDELLSDS+PYKE ENG+LWEVEGKWV +G +
Sbjct:    1 MLVYQDLLTGDELLSDSYPYKEIENGMLWEVEGKWVTKGVV 41          
BLAST of CF503846 vs. ExPASy Swiss-Prot
Match: TCTP_MAIZE (Translationally-controlled tumor protein homolog OS=Zea mays GN=TCTP PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.573e-14
Identity = 34/39 (87.18%), Postives = 36/39 (92.31%), Query Frame = 2
Query:   77 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQG 193
            MLVYQDLL+GDELLSDSF YKE ENG+LWEVEGKWV QG
Sbjct:    1 MLVYQDLLSGDELLSDSFTYKELENGVLWEVEGKWVTQG 39          
BLAST of CF503846 vs. ExPASy Swiss-Prot
Match: TCTP_BRAOL (Translationally-controlled tumor protein homolog OS=Brassica oleracea GN=TCTP PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.573e-14
Identity = 34/41 (82.93%), Postives = 36/41 (87.80%), Query Frame = 2
Query:   77 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAL 199
            MLVY DLLTGDELLSDSFPYKE ENGILWEVEGKW  +G +
Sbjct:    1 MLVYTDLLTGDELLSDSFPYKEIENGILWEVEGKWTTKGCV 41          
BLAST of CF503846 vs. ExPASy Swiss-Prot
Match: TCTP_WHEAT (Translationally-controlled tumor protein homolog OS=Triticum aestivum GN=TCTP PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.279e-14
Identity = 33/41 (80.49%), Postives = 38/41 (92.68%), Query Frame = 2
Query:   77 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAL 199
            MLVYQD L+GDELLSDSFPY+E ENG+LWEV+G WVVQGA+
Sbjct:    1 MLVYQDKLSGDELLSDSFPYRELENGVLWEVDGHWVVQGAV 41          
BLAST of CF503846 vs. ExPASy Swiss-Prot
Match: TCTP_HORVU (Translationally-controlled tumor protein homolog OS=Hordeum vulgare GN=TCTP PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 7.279e-14
Identity = 33/41 (80.49%), Postives = 38/41 (92.68%), Query Frame = 2
Query:   77 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAL 199
            MLVYQD L+GDELLSDSFPY+E ENG+LWEV+G WVVQGA+
Sbjct:    1 MLVYQDKLSGDELLSDSFPYRELENGVLWEVDGHWVVQGAV 41          
BLAST of CF503846 vs. ExPASy Swiss-Prot
Match: TCTP_TOBAC (Translationally-controlled tumor protein homolog OS=Nicotiana tabacum GN=TCTP PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.342e-12
Identity = 32/41 (78.05%), Postives = 36/41 (87.80%), Query Frame = 2
Query:   77 MLVYQDLLTGDELLSDSFPYKETENGILWEVEGKWVVQGAL 199
            MLVYQDLL+GDEL SDSF Y E  NG+LWEV+GKWVVQGA+
Sbjct:    1 MLVYQDLLSGDELPSDSFSYTELGNGVLWEVQGKWVVQGAV 41          
The following BLAST results are available for this feature:
BLAST of CF503846 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
TCTP_SOYBN1.123e-1487.80Translationally-controlled tumor protein homolog O... [more]
TCTP_CUCME1.123e-1482.93Translationally-controlled tumor protein homolog O... [more]
TCTP_MEDSA1.915e-1482.93Translationally-controlled tumor protein homolog O... [more]
TCTP_MAIZE5.573e-1487.18Translationally-controlled tumor protein homolog O... [more]
TCTP_BRAOL5.573e-1482.93Translationally-controlled tumor protein homolog O... [more]
TCTP_WHEAT7.279e-1480.49Translationally-controlled tumor protein homolog O... [more]
TCTP_HORVU7.279e-1480.49Translationally-controlled tumor protein homolog O... [more]
TCTP_TOBAC2.342e-1278.05Translationally-controlled tumor protein homolog O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-333 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503846 ID=CF503846; Name=CF503846; organism=Citrus sinensis; type=EST; length=269bp
GAGAGAGAGAGAACTAGTCTCCAGTTTTCTCCGTTGATTATTTTTCTTTT
TTGTGTTCGCGAGAGAGACTGCAATCATGTTGGTCTATCAAGATCTCCTC
ACCGGTGATGAGCTTCTCTCCGACTCTTTTCCCTACAAGGAAACTGAGAA
TGGGATTCTGTGGGAAGTTGAGGGAAAGTGGGTTGTACAAGGAGCCCTTT
GATGTTGACATTGGTGCAAATCCTTCTGCCGAAGGAGCTGATGAGGATGA
GGGTGTTGATGACCAAGCC
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