CF503857

Overview
NameCF503857
Unique NameCF503857
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length328
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11134 contig Csv1_Contig11134:919..1246. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB5_MOUSE (Tubulin beta-5 chain OS=Mus musculus GN=Tubb5 PE=1 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 7.481e-51
Identity = 89/107 (83.18%), Postives = 100/107 (93.46%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DPTG Y GD   DLQL+RI+VYYNEA+GG+YVPRA+L+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDS--DLQLDRISVYYNEATGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB5_MACMU (Tubulin beta chain OS=Macaca mulatta GN=TUBB PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 7.481e-51
Identity = 89/107 (83.18%), Postives = 100/107 (93.46%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DPTG Y GD   DLQL+RI+VYYNEA+GG+YVPRA+L+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDS--DLQLDRISVYYNEATGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB5_HUMAN (Tubulin beta chain OS=Homo sapiens GN=TUBB PE=1 SV=2)

HSP 1 Score: 198.749 bits (504), Expect = 7.481e-51
Identity = 89/107 (83.18%), Postives = 100/107 (93.46%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DPTG Y GD   DLQL+RI+VYYNEA+GG+YVPRA+L+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDS--DLQLDRISVYYNEATGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB5_CRIGR (Tubulin beta-5 chain OS=Cricetulus griseus GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 7.481e-51
Identity = 89/107 (83.18%), Postives = 100/107 (93.46%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DPTG Y GD   DLQL+RI+VYYNEA+GG+YVPRA+L+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDS--DLQLDRISVYYNEATGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB5_BOVIN (Tubulin beta-5 chain OS=Bos taurus GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 7.481e-51
Identity = 89/107 (83.18%), Postives = 100/107 (93.46%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DPTG Y GD   DLQL+RI+VYYNEA+GG+YVPRA+L+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDS--DLQLDRISVYYNEATGGKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB1_PHYPO (Tubulin beta-1 chain OS=Physarum polycephalum GN=BETA PE=1 SV=4)

HSP 1 Score: 198.749 bits (504), Expect = 7.481e-51
Identity = 89/107 (83.18%), Postives = 100/107 (93.46%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DPTG Y G+   DLQLERINVYYNEA+GG+YVPRAVL+DLEPGTMDS+R+GP+GQIFRPDNFVFGQ+GAGNNWAKGH
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGES--DLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRAGPFGQIFRPDNFVFGQTGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB_TRITR (Tubulin beta chain OS=Trichuris trichiura PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 9.771e-51
Identity = 88/107 (82.24%), Postives = 99/107 (92.52%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DPTG Y GD   DLQLERINVYYNEASGG+YVPRA+L+DLEPGTMDS+R+GP+G +FRPDNF+FGQSGAGNNWAKGH
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDS--DLQLERINVYYNEASGGKYVPRAILVDLEPGTMDSVRAGPFGTLFRPDNFIFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB3_CHICK (Tubulin beta-3 chain OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 9.771e-51
Identity = 90/107 (84.11%), Postives = 99/107 (92.52%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+H+Q GQCGNQIG+KFWEVI DEHG+DPTG Y GD   DLQLERINVYYNEA+GG+YVPRAVL+DLEPGTMDS+RSGP+ QIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDS--DLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRSGPFRQIFRPDNFVFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB1_GADMO (Tubulin beta-1 chain OS=Gadus morhua PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 1.276e-50
Identity = 89/107 (83.18%), Postives = 99/107 (92.52%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+H+Q GQCGNQIG+KFWEVI DEHG+DPTG Y GD   DLQL+RINVYYNEASGG+YVPRAVL+DLEPGTMDS+RSG +GQ+FRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDS--DLQLDRINVYYNEASGGKYVPRAVLVDLEPGTMDSVRSGAFGQVFRPDNFVFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB6_ECTVR (Tubulin beta-6 chain OS=Ectocarpus variabilis GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 1.667e-50
Identity = 87/107 (81.31%), Postives = 99/107 (92.52%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+H+Q GQCGNQIGSKFWEVI DEHG+DPTG+Y GD   DLQLERIN Y+NEA+ GRYVPRA+LMDLEPGTMDS+R+GP+GQ+FRPDNFVFGQ+GAGNNWAKGH
Sbjct:    1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIDPTGRYHGDS--DLQLERINCYFNEATAGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGH 105
The following BLAST results are available for this feature:
BLAST of CF503857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 402
Match NameE-valueIdentityDescription
TBB5_MOUSE7.481e-5183.18Tubulin beta-5 chain OS=Mus musculus GN=Tubb5 PE=1... [more]
TBB5_MACMU7.481e-5183.18Tubulin beta chain OS=Macaca mulatta GN=TUBB PE=2 ... [more]
TBB5_HUMAN7.481e-5183.18Tubulin beta chain OS=Homo sapiens GN=TUBB PE=1 SV... [more]
TBB5_CRIGR7.481e-5183.18Tubulin beta-5 chain OS=Cricetulus griseus GN=TUBB... [more]
TBB5_BOVIN7.481e-5183.18Tubulin beta-5 chain OS=Bos taurus GN=TUBB5 PE=2 S... [more]
TBB1_PHYPO7.481e-5183.18Tubulin beta-1 chain OS=Physarum polycephalum GN=B... [more]
TBB_TRITR9.771e-5182.24Tubulin beta chain OS=Trichuris trichiura PE=3 SV=... [more]
TBB3_CHICK9.771e-5184.11Tubulin beta-3 chain OS=Gallus gallus PE=2 SV=1[more]
TBB1_GADMO1.276e-5083.18Tubulin beta-1 chain OS=Gadus morhua PE=2 SV=1[more]
TBB6_ECTVR1.667e-5081.31Tubulin beta-6 chain OS=Ectocarpus variabilis GN=T... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-344 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503857 ID=CF503857; Name=CF503857; organism=Citrus sinensis; type=EST; length=328bp
GATAAATGAGAGAGATCTTGCACATTCAAGGAGGCCAATGCGGCAACCAA
ATCGGCTCCAAATTCTGGGAAGTCATTTGCGACGAGCATGGCGTGGACCC
CACGGGGAAGTATAGAGGTGACGGCGTTGAGGATCTTCAACTGGAGCGAA
TCAATGTCTATTACAACGAAGCTTCCGGTGGAAGGTACGTGCCTCGAGCT
GTTCTCATGGATCTTGAACCCGGTACCATGGATAGTATCAGATCCGGCCC
GTACGGCCAGATCTTTCGACCTGATAACTTCGTTTTTGGACAATCCGGTG
CGGGCAATAACTGGGCCAAAGGTCATTA
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