CF503857

Overview
NameCF503857
Unique NameCF503857
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length328
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11134 contig Csv1_Contig11134:919..1246. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB1_CAEBR (Tubulin beta-1 chain OS=Caenorhabditis briggsae GN=mec-7 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 4.849e-50
Identity = 89/107 (83.18%), Postives = 98/107 (91.59%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQ GQCGNQIGSKFWEVI DEHG+DPTG+Y GD   DLQLERINVYYNEA   +YVPRAVL+DLEPGTMDS+RSGP+GQ+FRPDN+VFGQSGAGNNWAKGH
Sbjct:    1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPTGQYVGDS--DLQLERINVYYNEAGSNKYVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNYVFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB_PLAFA (Tubulin beta chain OS=Plasmodium falciparum PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 6.333e-50
Identity = 86/107 (80.37%), Postives = 100/107 (93.46%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DP+G Y GD   DLQLER++V+YNEA+GGRYVPRA+LMDLEPGTMDS+R+GP+GQ+FRPDNFVFGQ+GAGNNWAKGH
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGTYSGDS--DLQLERVDVFYNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB_PLAFK (Tubulin beta chain OS=Plasmodium falciparum (isolate K1 / Thailand) PE=3 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 1.080e-49
Identity = 86/107 (80.37%), Postives = 100/107 (93.46%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DP+G Y GD   DLQLER++V+YNEA+GGRYVPRA+LMDLEPGTMDS+R+GP+GQ+FRPDNFVFGQ+GAGNNWAKGH
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGTYCGDS--DLQLERVDVFYNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB_PLAF7 (Tubulin beta chain OS=Plasmodium falciparum (isolate 3D7) GN=PF10_0084 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 1.080e-49
Identity = 86/107 (80.37%), Postives = 100/107 (93.46%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DP+G Y GD   DLQLER++V+YNEA+GGRYVPRA+LMDLEPGTMDS+R+GP+GQ+FRPDNFVFGQ+GAGNNWAKGH
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGTYCGDS--DLQLERVDVFYNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB1_CAEEL (Tubulin beta-1 chain OS=Caenorhabditis elegans GN=mec-7 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 1.411e-49
Identity = 88/107 (82.24%), Postives = 98/107 (91.59%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQ GQCGNQIGSKFWEVI DEHG+DP+G+Y GD   DLQLERINVYYNEA   +YVPRAVL+DLEPGTMDS+RSGP+GQ+FRPDN+VFGQSGAGNNWAKGH
Sbjct:    1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPSGQYVGDS--DLQLERINVYYNEAGSNKYVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNYVFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB_BABBO (Tubulin beta chain OS=Babesia bovis PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 2.407e-49
Identity = 87/107 (81.31%), Postives = 99/107 (92.52%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+D +G Y GD   DLQLERI+V+YNEA+GGRYVPRAVLMDLEPGTMDS+R+GP+GQ+FRPDNFVFGQ+GAGNNWAKGH
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDQSGTYHGDS--DLQLERIDVFYNEATGGRYVPRAVLMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB3_MAIZE (Tubulin beta-3 chain OS=Zea mays GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 2.407e-49
Identity = 91/107 (85.05%), Postives = 96/107 (89.72%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREILHIQGGQCGNQIG+KFWEVIC EHGVD TG Y   GV   QLERINVYYNEA GGRYVPRAVLMDLEPGTM+SIR+GP+G IFRPDNFV+GQSGAGNNWAKGH
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICGEHGVDSTGCY--SGVSPQQLERINVYYNEAGGGRYVPRAVLMDLEPGTMESIRAGPFGGIFRPDNFVYGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB1_BRUPA (Tubulin beta-1 chain OS=Brugia pahangi PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 5.361e-49
Identity = 87/107 (81.31%), Postives = 97/107 (90.65%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+H+Q GQCGNQIG+KFWEVI DEHGV P G Y+GD   DLQ+ERINVYYNEA+GG+YVPRAVL+DLEPGTMDSIR G +GQ+FRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREIVHVQAGQCGNQIGAKFWEVISDEHGVQPDGTYKGDS--DLQIERINVYYNEANGGKYVPRAVLVDLEPGTMDSIRGGEFGQLFRPDNFVFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB7_GOSHI (Tubulin beta-7 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 9.145e-49
Identity = 85/107 (79.44%), Postives = 96/107 (89.72%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREILH+Q GQCGNQIG KFWEV+ DEHG+DP G Y G     +QLER+NVYYNEASGGRYVPRAVLMDLEPGTMDS+R+GP+GQ+FRPDNF+FGQ+GAGNNWAKGH
Sbjct:    1 MREILHVQAGQCGNQIGGKFWEVVSDEHGIDPKGNYVG--TSRVQLERVNVYYNEASGGRYVPRAVLMDLEPGTMDSLRTGPHGQLFRPDNFIFGQNGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB_EUPFO (Tubulin beta chain OS=Euplotes focardii PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 1.194e-48
Identity = 87/107 (81.31%), Postives = 97/107 (90.65%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQ GQCGNQIG+KFWEVI DEHGVDPTG Y GD   DLQLERINVY+NEA+G +  PRA+LMDLEPGTMDS+R+GP+GQ+FRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGVDPTGTYHGDS--DLQLERINVYFNEATGRKICPRAMLMDLEPGTMDSVRAGPFGQLFRPDNFVFGQSGAGNNWAKGH 105
The following BLAST results are available for this feature:
BLAST of CF503857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 402
Match NameE-valueIdentityDescription
TBB1_CAEBR4.849e-5083.18Tubulin beta-1 chain OS=Caenorhabditis briggsae GN... [more]
TBB_PLAFA6.333e-5080.37Tubulin beta chain OS=Plasmodium falciparum PE=3 S... [more]
TBB_PLAFK1.080e-4980.37Tubulin beta chain OS=Plasmodium falciparum (isola... [more]
TBB_PLAF71.080e-4980.37Tubulin beta chain OS=Plasmodium falciparum (isola... [more]
TBB1_CAEEL1.411e-4982.24Tubulin beta-1 chain OS=Caenorhabditis elegans GN=... [more]
TBB_BABBO2.407e-4981.31Tubulin beta chain OS=Babesia bovis PE=3 SV=1[more]
TBB3_MAIZE2.407e-4985.05Tubulin beta-3 chain OS=Zea mays GN=TUBB3 PE=2 SV=... [more]
TBB1_BRUPA5.361e-4981.31Tubulin beta-1 chain OS=Brugia pahangi PE=3 SV=1[more]
TBB7_GOSHI9.145e-4979.44Tubulin beta-7 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB_EUPFO1.194e-4881.31Tubulin beta chain OS=Euplotes focardii PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-344 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503857 ID=CF503857; Name=CF503857; organism=Citrus sinensis; type=EST; length=328bp
GATAAATGAGAGAGATCTTGCACATTCAAGGAGGCCAATGCGGCAACCAA
ATCGGCTCCAAATTCTGGGAAGTCATTTGCGACGAGCATGGCGTGGACCC
CACGGGGAAGTATAGAGGTGACGGCGTTGAGGATCTTCAACTGGAGCGAA
TCAATGTCTATTACAACGAAGCTTCCGGTGGAAGGTACGTGCCTCGAGCT
GTTCTCATGGATCTTGAACCCGGTACCATGGATAGTATCAGATCCGGCCC
GTACGGCCAGATCTTTCGACCTGATAACTTCGTTTTTGGACAATCCGGTG
CGGGCAATAACTGGGCCAAAGGTCATTA
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