CF503857

Overview
NameCF503857
Unique NameCF503857
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length328
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB2_CAEEL (Tubulin beta-2 chain OS=Caenorhabditis elegans GN=tbb-2 PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 2.037e-48
Identity = 85/107 (79.44%), Postives = 98/107 (91.59%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+H+Q GQCGNQIGSKFWEVI DEHG+ P G ++G+   DLQLERI+VYYNEA+ G+YVPRAVL+DLEPGTMDS+RSGP+GQ+FRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIQPDGTFKGE--TDLQLERIDVYYNEANNGKYVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNFVFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB3_PEA (Tubulin beta-3 chain (Fragment) OS=Pisum sativum GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 5.928e-48
Identity = 84/98 (85.71%), Postives = 93/98 (94.90%), Query Frame = 3 
Query:   33 GQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            GQCGNQIGSKFWEV+CDEHG+DPTG+Y G+   DLQLER+NVYYNEAS GR+VPRA+LMDLEPGTMDS+R+GPYGQIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 GQCGNQIGSKFWEVVCDEHGIDPTGRYVGNS--DLQLERVNVYYNEASCGRFVPRAILMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGH 96
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB5_CHICK (Tubulin beta-5 chain OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 7.742e-48
Identity = 85/107 (79.44%), Postives = 96/107 (89.72%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DP G Y GD    LQLERINVYYNE+S  +YVPRAVL+DLEPGTMDS+RSGP+GQ+FRPDNF+FGQ+GAGNNWAKGH
Sbjct:    1 MREIVHIQAGQCGNQIGTKFWEVISDEHGIDPAGGYVGDSA--LQLERINVYYNESSSQKYVPRAVLVDLEPGTMDSVRSGPFGQLFRPDNFIFGQTGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB2_DROME (Tubulin beta-2 chain OS=Drosophila melanogaster GN=betaTub85D PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 7.742e-48
Identity = 87/107 (81.31%), Postives = 95/107 (88.79%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQ GQCGNQIG KFWEVI DEH +D TG Y GD   DLQLERINVYYNEA+G +YVPRA+L+DLEPGTMDS+RSG +GQIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREIVHIQAGQCGNQIGGKFWEVISDEHCIDATGTYYGDS--DLQLERINVYYNEATGAKYVPRAILVDLEPGTMDSVRSGAFGQIFRPDNFVFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB2_DROHY (Tubulin beta-2 chain OS=Drosophila hydei GN=betaTub85D PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 7.742e-48
Identity = 87/107 (81.31%), Postives = 95/107 (88.79%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQ GQCGNQIG KFWEVI DEH +D TG Y GD   DLQLERINVYYNEA+G +YVPRA+L+DLEPGTMDS+RSG +GQIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREIVHIQAGQCGNQIGGKFWEVISDEHCIDATGTYYGDS--DLQLERINVYYNEATGAKYVPRAILVDLEPGTMDSVRSGAFGQIFRPDNFVFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB_ONCGI (Tubulin beta chain OS=Onchocerca gibsoni GN=TBB PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.011e-47
Identity = 85/107 (79.44%), Postives = 95/107 (88.79%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQ GQCGNQIGSKFWEVI DEHG+DP G+Y GD   DLQLERINVYYNE    RYVPRA+L+DLEPGTMDS+R+G +GQ+FRPDN+VFGQSGAGNNWAKGH
Sbjct:    1 MREIVHIQAGQCGNQIGSKFWEVISDEHGIDPLGQYHGDS--DLQLERINVYYNEVQKKRYVPRAILVDLEPGTMDSVRAGAFGQLFRPDNYVFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB2_DROER (Tubulin beta-2 chain OS=Drosophila erecta GN=betaTub85D PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 1.011e-47
Identity = 87/107 (81.31%), Postives = 95/107 (88.79%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQ GQCGNQIG KFWEVI DEH +D TG Y GD   DLQLERINVYYNEA+G +YVPRA+L+DLEPGTMDS+RSG +GQIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREIVHIQAGQCGNQIGGKFWEVISDEHCIDATGTYYGDS--DLQLERINVYYNEATGAKYVPRAILVDLEPGTMDSVRSGRFGQIFRPDNFVFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB6_HUMAN (Tubulin beta-6 chain OS=Homo sapiens GN=TUBB6 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 2.252e-47
Identity = 84/107 (78.50%), Postives = 95/107 (88.79%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DP G Y GD    LQLERINVYYNE+S  +YVPRA L+DLEPGTMDS+RSGP+GQ+FRPDNF+FGQ+GAGNNWAKGH
Sbjct:    1 MREIVHIQAGQCGNQIGTKFWEVISDEHGIDPAGGYVGDSA--LQLERINVYYNESSSQKYVPRAALVDLEPGTMDSVRSGPFGQLFRPDNFIFGQTGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB6_BOVIN (Tubulin beta-6 chain OS=Bos taurus GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 2.252e-47
Identity = 84/107 (78.50%), Postives = 95/107 (88.79%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DP G Y GD    LQLERINVYYNE+S  +YVPRA L+DLEPGTMDS+RSGP+GQ+FRPDNF+FGQ+GAGNNWAKGH
Sbjct:    1 MREIVHIQAGQCGNQIGTKFWEVISDEHGIDPAGGYVGDSA--LQLERINVYYNESSSQKYVPRAALVDLEPGTMDSVRSGPFGQLFRPDNFIFGQTGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB4_CHICK (Tubulin beta-4 chain OS=Gallus gallus PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 2.252e-47
Identity = 84/107 (78.50%), Postives = 96/107 (89.72%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DP+G Y GD   DLQLERI+VYYNEAS  +YVPRA+L+DLEPGTMDS+RSG +G +FRPDNF+FGQSGAGNNWAKGH
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDS--DLQLERISVYYNEASSHKYVPRAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGH 105
The following BLAST results are available for this feature:
BLAST of CF503857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 402
Match NameE-valueIdentityDescription
TBB2_CAEEL2.037e-4879.44Tubulin beta-2 chain OS=Caenorhabditis elegans GN=... [more]
TBB3_PEA5.928e-4885.71Tubulin beta-3 chain (Fragment) OS=Pisum sativum G... [more]
TBB5_CHICK7.742e-4879.44Tubulin beta-5 chain OS=Gallus gallus PE=3 SV=1[more]
TBB2_DROME7.742e-4881.31Tubulin beta-2 chain OS=Drosophila melanogaster GN... [more]
TBB2_DROHY7.742e-4881.31Tubulin beta-2 chain OS=Drosophila hydei GN=betaTu... [more]
TBB_ONCGI1.011e-4779.44Tubulin beta chain OS=Onchocerca gibsoni GN=TBB PE... [more]
TBB2_DROER1.011e-4781.31Tubulin beta-2 chain OS=Drosophila erecta GN=betaT... [more]
TBB6_HUMAN2.252e-4778.50Tubulin beta-6 chain OS=Homo sapiens GN=TUBB6 PE=1... [more]
TBB6_BOVIN2.252e-4778.50Tubulin beta-6 chain OS=Bos taurus GN=TUBB6 PE=2 S... [more]
TBB4_CHICK2.252e-4778.50Tubulin beta-4 chain OS=Gallus gallus PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-344 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503857 ID=CF503857; Name=CF503857; organism=Citrus sinensis; type=EST; length=328bp
GATAAATGAGAGAGATCTTGCACATTCAAGGAGGCCAATGCGGCAACCAA
ATCGGCTCCAAATTCTGGGAAGTCATTTGCGACGAGCATGGCGTGGACCC
CACGGGGAAGTATAGAGGTGACGGCGTTGAGGATCTTCAACTGGAGCGAA
TCAATGTCTATTACAACGAAGCTTCCGGTGGAAGGTACGTGCCTCGAGCT
GTTCTCATGGATCTTGAACCCGGTACCATGGATAGTATCAGATCCGGCCC
GTACGGCCAGATCTTTCGACCTGATAACTTCGTTTTTGGACAATCCGGTG
CGGGCAATAACTGGGCCAAAGGTCATTA
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