CF503857

Overview
NameCF503857
Unique NameCF503857
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length328
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB3_RAT (Tubulin beta-3 chain OS=Rattus norvegicus GN=Tubb3 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 2.252e-47
Identity = 84/107 (78.50%), Postives = 96/107 (89.72%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DP+G Y GD   DLQLERI+VYYNEAS  +YVPRA+L+DLEPGTMDS+RSG +G +FRPDNF+FGQSGAGNNWAKGH
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDS--DLQLERISVYYNEASSHKYVPRAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB3_MOUSE (Tubulin beta-3 chain OS=Mus musculus GN=Tubb3 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 2.252e-47
Identity = 84/107 (78.50%), Postives = 96/107 (89.72%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DP+G Y GD   DLQLERI+VYYNEAS  +YVPRA+L+DLEPGTMDS+RSG +G +FRPDNF+FGQSGAGNNWAKGH
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDS--DLQLERISVYYNEASSHKYVPRAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB3_MACFA (Tubulin beta-3 chain OS=Macaca fascicularis GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 2.252e-47
Identity = 84/107 (78.50%), Postives = 96/107 (89.72%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DP+G Y GD   DLQLERI+VYYNEAS  +YVPRA+L+DLEPGTMDS+RSG +G +FRPDNF+FGQSGAGNNWAKGH
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDS--DLQLERISVYYNEASSHKYVPRAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB3_HUMAN (Tubulin beta-3 chain OS=Homo sapiens GN=TUBB3 PE=1 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 2.252e-47
Identity = 84/107 (78.50%), Postives = 96/107 (89.72%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DP+G Y GD   DLQLERI+VYYNEAS  +YVPRA+L+DLEPGTMDS+RSG +G +FRPDNF+FGQSGAGNNWAKGH
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDS--DLQLERISVYYNEASSHKYVPRAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB3_BOVIN (Tubulin beta-3 chain OS=Bos taurus GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 2.252e-47
Identity = 84/107 (78.50%), Postives = 96/107 (89.72%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DP+G Y GD   DLQLERI+VYYNEAS  +YVPRA+L+DLEPGTMDS+RSG +G +FRPDNF+FGQSGAGNNWAKGH
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGNYVGDS--DLQLERISVYYNEASSHKYVPRAILVDLEPGTMDSVRSGAFGHLFRPDNFIFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB3_ECHMU (Tubulin beta-3 chain OS=Echinococcus multilocularis GN=TUB-3 PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 8.559e-47
Identity = 82/107 (76.64%), Postives = 93/107 (86.92%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MRE++H+Q GQCGNQIGSKFWE I  EHG+D  G Y GD   DLQLERINVYYNE  GG+YVPRA+L+DLEPGTMDS+RSGP G++FRPDNF+FGQSGAGNNWAKGH
Sbjct:    1 MRELVHMQAGQCGNQIGSKFWETISQEHGIDEMGSYHGDS--DLQLERINVYYNEGQGGKYVPRALLIDLEPGTMDSVRSGPLGKLFRPDNFIFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB8_HUMAN (Tubulin beta-8 chain OS=Homo sapiens GN=TUBB8 PE=1 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 1.907e-46
Identity = 85/107 (79.44%), Postives = 93/107 (86.92%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+  Q GQCGNQIG+KFWEVI DEH +D  G Y GD    LQLERINVYYNEASGGRYVPRAVL+DLEPGTMDS+RSGP+GQ+FRPDNF+FGQ GAGNNWAKGH
Sbjct:    1 MREIVLTQIGQCGNQIGAKFWEVISDEHAIDSAGTYHGDS--HLQLERINVYYNEASGGRYVPRAVLVDLEPGTMDSVRSGPFGQVFRPDNFIFGQCGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB1_HOMAM (Tubulin beta-1 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 3.253e-46
Identity = 81/109 (74.31%), Postives = 98/109 (89.91%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVE--DLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+H+Q GQCGNQIG+KFWE+I DEHG+ PTG+Y G   +  +LQLERINVYYNE + G+YVPRAVL+DLEPGTMDS+R+GP+GQ+F+PD+FVFGQSGAGNNWAKGH
Sbjct:    1 MREIVHLQTGQCGNQIGTKFWEIISDEHGIQPTGEYTGADKDLMELQLERINVYYNEGNQGKYVPRAVLVDLEPGTMDSVRAGPHGQLFKPDSFVFGQSGAGNNWAKGH 109
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB_EUGGR (Tubulin beta chain OS=Euglena gracilis GN=TUBB PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 4.248e-46
Identity = 88/107 (82.24%), Postives = 94/107 (87.85%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQ GQCGNQIGSKFWEVI DE GVDP       G  DLQLERINVYYNEA+GGRYVP A+LMDLEPGTMDS+R+GPYGQIFRPDNFVFGQ+GAGNNWAKGH
Sbjct:    1 MREIVHIQAGQCGNQIGSKFWEVISDEQGVDPPDI---PGDSDLQLERINVYYNEATGGRYVP-AILMDLEPGTMDSVRAGPYGQIFRPDNFVFGQTGAGNNWAKGH 103
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB2_HOMAM (Tubulin beta-2 chain OS=Homarus americanus PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 4.248e-46
Identity = 84/111 (75.68%), Postives = 99/111 (89.19%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVE----DLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQ GQCGNQIG+KFWE+I DEHG+ PTG+Y   GVE    +LQLERINVYYNE + G+YVPRAVL+DLEPGTMDS+R+GP+GQ+F+PD+FVFGQSGAGNNWAKGH
Sbjct:    1 MREIVHIQTGQCGNQIGTKFWEIISDEHGIQPTGEYT-TGVEKDLMELQLERINVYYNEGNQGKYVPRAVLVDLEPGTMDSVRAGPHGQLFKPDSFVFGQSGAGNNWAKGH 110
The following BLAST results are available for this feature:
BLAST of CF503857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 402
Match NameE-valueIdentityDescription
TBB3_RAT2.252e-4778.50Tubulin beta-3 chain OS=Rattus norvegicus GN=Tubb3... [more]
TBB3_MOUSE2.252e-4778.50Tubulin beta-3 chain OS=Mus musculus GN=Tubb3 PE=1... [more]
TBB3_MACFA2.252e-4778.50Tubulin beta-3 chain OS=Macaca fascicularis GN=TUB... [more]
TBB3_HUMAN2.252e-4778.50Tubulin beta-3 chain OS=Homo sapiens GN=TUBB3 PE=1... [more]
TBB3_BOVIN2.252e-4778.50Tubulin beta-3 chain OS=Bos taurus GN=TUBB3 PE=2 S... [more]
TBB3_ECHMU8.559e-4776.64Tubulin beta-3 chain OS=Echinococcus multiloculari... [more]
TBB8_HUMAN1.907e-4679.44Tubulin beta-8 chain OS=Homo sapiens GN=TUBB8 PE=1... [more]
TBB1_HOMAM3.253e-4674.31Tubulin beta-1 chain OS=Homarus americanus PE=2 SV... [more]
TBB_EUGGR4.248e-4682.24Tubulin beta chain OS=Euglena gracilis GN=TUBB PE=... [more]
TBB2_HOMAM4.248e-4675.68Tubulin beta-2 chain OS=Homarus americanus PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-344 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503857 ID=CF503857; Name=CF503857; organism=Citrus sinensis; type=EST; length=328bp
GATAAATGAGAGAGATCTTGCACATTCAAGGAGGCCAATGCGGCAACCAA
ATCGGCTCCAAATTCTGGGAAGTCATTTGCGACGAGCATGGCGTGGACCC
CACGGGGAAGTATAGAGGTGACGGCGTTGAGGATCTTCAACTGGAGCGAA
TCAATGTCTATTACAACGAAGCTTCCGGTGGAAGGTACGTGCCTCGAGCT
GTTCTCATGGATCTTGAACCCGGTACCATGGATAGTATCAGATCCGGCCC
GTACGGCCAGATCTTTCGACCTGATAACTTCGTTTTTGGACAATCCGGTG
CGGGCAATAACTGGGCCAAAGGTCATTA
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