CF503857

Overview
NameCF503857
Unique NameCF503857
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length328
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11134 contig Csv1_Contig11134:919..1246. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB1_CYAPA (Tubulin beta-1 chain OS=Cyanophora paradoxa GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 3.588e-53
Identity = 93/107 (86.92%), Postives = 101/107 (94.39%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+H+QGGQCGNQIG+KFWEVI DEHGVDPTG Y GD   DLQLERINVYYNEA+GGRYVPRAVLMDLEPGTMDS+R+GPYGQ+FRPDNF+FGQSGAGNNWAKGH
Sbjct:    1 MREIVHVQGGQCGNQIGAKFWEVISDEHGVDPTGTYHGDS--DLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGPYGQLFRPDNFIFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB_CHLIN (Tubulin beta chain OS=Chlamydomonas incerta GN=TUBB PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 6.120e-53
Identity = 93/107 (86.92%), Postives = 101/107 (94.39%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQGGQCGNQIG+KFWEV+ DEHGVDPTG Y GD   DLQLERINVY+NEA+GGRYVPRA+LMDLEPGTMDS+RSGPYGQIFRPDNFVFGQ+GAGNNWAKGH
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVVSDEHGVDPTGTYHGDS--DLQLERINVYFNEATGGRYVPRAILMDLEPGTMDSVRSGPYGQIFRPDNFVFGQTGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB_STYLE (Tubulin beta chain OS=Stylonychia lemnae GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 7.993e-53
Identity = 93/107 (86.92%), Postives = 101/107 (94.39%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQGGQCGNQIG+KFWEVI DEHG+DPTG Y GD   DLQLERINVYYNEA+GGRYVPRAVLMDLEPGTMDS+R+GP+GQ+FRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVISDEHGIDPTGTYHGDS--DLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGPFGQLFRPDNFVFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB_PHYCI (Tubulin beta chain OS=Phytophthora cinnamomi PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 7.993e-53
Identity = 92/107 (85.98%), Postives = 101/107 (94.39%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MRE++HIQGGQCGNQIG+KFWEVI DEHGVDPTG Y GD   DLQLERINVYYNEA+GGRYVPRA+LMDLEPGTMDS+R+GPYGQ+FRPDNFVFGQ+GAGNNWAKGH
Sbjct:    1 MRELVHIQGGQCGNQIGAKFWEVISDEHGVDPTGSYHGDS--DLQLERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPYGQLFRPDNFVFGQTGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB_CHLRE (Tubulin beta-1/beta-2 chain OS=Chlamydomonas reinhardtii GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 7.993e-53
Identity = 92/107 (85.98%), Postives = 101/107 (94.39%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQGGQCGNQIG+KFWEV+ DEHG+DPTG Y GD   DLQLERINVY+NEA+GGRYVPRA+LMDLEPGTMDS+RSGPYGQIFRPDNFVFGQ+GAGNNWAKGH
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVVSDEHGIDPTGTYHGDS--DLQLERINVYFNEATGGRYVPRAILMDLEPGTMDSVRSGPYGQIFRPDNFVFGQTGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB2_MAIZE (Tubulin beta-2 chain OS=Zea mays GN=TUBB2 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 7.993e-53
Identity = 92/107 (85.98%), Postives = 101/107 (94.39%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREILHIQGGQCGNQIGSKFWEV+CDEHG+DPTG+Y G    D+QLER+NVYYNEAS GR+VPRAVLMDLEPGTMD++R+GPYGQIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREILHIQGGQCGNQIGSKFWEVVCDEHGIDPTGRYMG--TSDVQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDAVRTGPYGQIFRPDNFVFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB1_VOLCA (Tubulin beta chain OS=Volvox carteri GN=TUBB1 PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 7.993e-53
Identity = 92/107 (85.98%), Postives = 101/107 (94.39%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQGGQCGNQIG+KFWEV+ DEHG+DPTG Y GD   DLQLERINVY+NEA+GGRYVPRA+LMDLEPGTMDS+RSGPYGQIFRPDNFVFGQ+GAGNNWAKGH
Sbjct:    1 MREIVHIQGGQCGNQIGAKFWEVVSDEHGIDPTGTYHGDS--DLQLERINVYFNEATGGRYVPRAILMDLEPGTMDSVRSGPYGQIFRPDNFVFGQTGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB2_ARATH (Tubulin beta-2/beta-3 chain OS=Arabidopsis thaliana GN=TUBB2 PE=1 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 1.044e-52
Identity = 94/107 (87.85%), Postives = 100/107 (93.46%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREILHIQGGQCGNQIG+KFWEV+C EHG+DPTG+Y GD   DLQLERINVYYNEAS GR+VPRAVLMDLEPGTMDS+RSGPYGQ FRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVVCAEHGIDPTGRYTGDS--DLQLERINVYYNEASCGRFVPRAVLMDLEPGTMDSLRSGPYGQTFRPDNFVFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB_NAEGR (Tubulin beta chain OS=Naegleria gruberi PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 1.781e-52
Identity = 93/107 (86.92%), Postives = 100/107 (93.46%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQ GQCGNQIG+KFWEVI DEHGVDPTG Y GD   DLQLERINVYYNEA+GGRYVPRA+LMDLEPGTMDS+R+GPYGQIFRPDNFVFGQ+GAGNNWAKGH
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGVDPTGAYHGDS--DLQLERINVYYNEATGGRYVPRAILMDLEPGTMDSVRAGPYGQIFRPDNFVFGQTGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB_EUPCR (Tubulin beta chain OS=Euplotes crassus PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 1.781e-52
Identity = 92/107 (85.98%), Postives = 101/107 (94.39%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+H+QGGQCGNQIG+KFWEVI DEHGVDPTG Y GD   DLQLERINVYYNEA+GGRYVPRAVLMDLEPGTMDS+R+GP+GQ+FRPDNFVFGQ+GAGNNWAKGH
Sbjct:    1 MREIVHVQGGQCGNQIGAKFWEVISDEHGVDPTGTYHGDS--DLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGH 105
The following BLAST results are available for this feature:
BLAST of CF503857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 402
Match NameE-valueIdentityDescription
TBB1_CYAPA3.588e-5386.92Tubulin beta-1 chain OS=Cyanophora paradoxa GN=TUB... [more]
TBB_CHLIN6.120e-5386.92Tubulin beta chain OS=Chlamydomonas incerta GN=TUB... [more]
TBB_STYLE7.993e-5386.92Tubulin beta chain OS=Stylonychia lemnae GN=TUBB1 ... [more]
TBB_PHYCI7.993e-5385.98Tubulin beta chain OS=Phytophthora cinnamomi PE=3 ... [more]
TBB_CHLRE7.993e-5385.98Tubulin beta-1/beta-2 chain OS=Chlamydomonas reinh... [more]
TBB2_MAIZE7.993e-5385.98Tubulin beta-2 chain OS=Zea mays GN=TUBB2 PE=2 SV=... [more]
TBB1_VOLCA7.993e-5385.98Tubulin beta chain OS=Volvox carteri GN=TUBB1 PE=3... [more]
TBB2_ARATH1.044e-5287.85Tubulin beta-2/beta-3 chain OS=Arabidopsis thalian... [more]
TBB_NAEGR1.781e-5286.92Tubulin beta chain OS=Naegleria gruberi PE=2 SV=1[more]
TBB_EUPCR1.781e-5285.98Tubulin beta chain OS=Euplotes crassus PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-344 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503857 ID=CF503857; Name=CF503857; organism=Citrus sinensis; type=EST; length=328bp
GATAAATGAGAGAGATCTTGCACATTCAAGGAGGCCAATGCGGCAACCAA
ATCGGCTCCAAATTCTGGGAAGTCATTTGCGACGAGCATGGCGTGGACCC
CACGGGGAAGTATAGAGGTGACGGCGTTGAGGATCTTCAACTGGAGCGAA
TCAATGTCTATTACAACGAAGCTTCCGGTGGAAGGTACGTGCCTCGAGCT
GTTCTCATGGATCTTGAACCCGGTACCATGGATAGTATCAGATCCGGCCC
GTACGGCCAGATCTTTCGACCTGATAACTTCGTTTTTGGACAATCCGGTG
CGGGCAATAACTGGGCCAAAGGTCATTA
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