CF503857

Overview
NameCF503857
Unique NameCF503857
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length328
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11134 contig Csv1_Contig11134:919..1246. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA4A_MOUSE (Tubulin alpha-4A chain OS=Mus musculus GN=Tuba4a PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.621e-21
Identity = 44/107 (41.12%), Postives = 65/107 (60.75%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MRE + +  GQ G Q+G+  WE+ C EHG+ P G+   D       +    ++ E   G++VPRAV +DLEP  +D IR+GPY Q+F P+  + G+  A NN+A+GH
Sbjct:    1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGH 107
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA4A_MACFA (Tubulin alpha-4A chain OS=Macaca fascicularis GN=TUBA4A PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.621e-21
Identity = 44/107 (41.12%), Postives = 65/107 (60.75%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MRE + +  GQ G Q+G+  WE+ C EHG+ P G+   D       +    ++ E   G++VPRAV +DLEP  +D IR+GPY Q+F P+  + G+  A NN+A+GH
Sbjct:    1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGH 107
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA4A_HUMAN (Tubulin alpha-4A chain OS=Homo sapiens GN=TUBA4A PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.621e-21
Identity = 44/107 (41.12%), Postives = 65/107 (60.75%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MRE + +  GQ G Q+G+  WE+ C EHG+ P G+   D       +    ++ E   G++VPRAV +DLEP  +D IR+GPY Q+F P+  + G+  A NN+A+GH
Sbjct:    1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGH 107
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA4A_BOVIN (Tubulin alpha-4A chain OS=Bos taurus GN=TUBA4A PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 3.621e-21
Identity = 44/107 (41.12%), Postives = 65/107 (60.75%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MRE + +  GQ G Q+G+  WE+ C EHG+ P G+   D       +    ++ E   G++VPRAV +DLEP  +D IR+GPY Q+F P+  + G+  A NN+A+GH
Sbjct:    1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGKHVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGH 107
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA3E_HUMAN (Tubulin alpha-3E chain OS=Homo sapiens GN=TUBA3E PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 3.621e-21
Identity = 44/107 (41.12%), Postives = 66/107 (61.68%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MRE + I  GQ G QIG+  WE+ C EHG+ P G+   D       +  N +++E   G++VPRAV +DLEP  +D +R+G Y Q+F P+  + G+  A +N+A+GH
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAASNYARGH 107
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA2_PATVU (Tubulin alpha-2/alpha-4 chain OS=Patella vulgata GN=TUB2 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.621e-21
Identity = 43/107 (40.19%), Postives = 66/107 (61.68%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MRE + +  GQ G Q+G+  WE+ C EHG+ P G+   D       +  N +++E   G++VPRAV +DLEP  +D +R+G Y Q+F P+  + G+  A NN+A+GH
Sbjct:    1 MRECISVHIGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGH 107
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA2_MAIZE (Tubulin alpha-2 chain OS=Zea mays GN=TUBA2 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.621e-21
Identity = 44/107 (41.12%), Postives = 66/107 (61.68%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MRE + I  GQ G Q+G+  WE+ C EHG+   G+  GD       +  N +++E   G++VPRAV +DLEP  +D +R+G Y Q+F P+  + G+  A NN+A+GH
Sbjct:    1 MRECISIHIGQAGIQVGNACWELYCLEHGIQADGQMPGDKTIGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGH 107
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA1_MAIZE (Tubulin alpha-1 chain OS=Zea mays GN=TUBA1 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.621e-21
Identity = 44/107 (41.12%), Postives = 66/107 (61.68%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MRE + I  GQ G Q+G+  WE+ C EHG+   G+  GD       +  N +++E   G++VPRAV +DLEP  +D +R+G Y Q+F P+  + G+  A NN+A+GH
Sbjct:    1 MRECISIHIGQAGIQVGNACWELYCLEHGIQADGQMPGDKTIGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGH 107
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA1_ELEIN (Tubulin alpha-1 chain OS=Eleusine indica GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.621e-21
Identity = 44/107 (41.12%), Postives = 66/107 (61.68%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MRE + I  GQ G Q+G+  WE+ C EHG+   G+  GD       +  N +++E   G++VPRAV +DLEP  +D +R+G Y Q+F P+  + G+  A NN+A+GH
Sbjct:    1 MRECISIHIGQAGIQVGNACWELYCLEHGIQADGQMPGDKTIGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGH 107
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA_BOMMO (Tubulin alpha chain OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.729e-21
Identity = 43/107 (40.19%), Postives = 66/107 (61.68%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MRE + +  GQ G QIG+  WE+ C EHG+ P G+   D       +  N +++E   G++VPRA+ +DLEP  +D +R+G Y Q+F P+  + G+  A NN+A+GH
Sbjct:    1 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKHVPRALFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGH 107
The following BLAST results are available for this feature:
BLAST of CF503857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 402
Match NameE-valueIdentityDescription
TBA4A_MOUSE3.621e-2141.12Tubulin alpha-4A chain OS=Mus musculus GN=Tuba4a P... [more]
TBA4A_MACFA3.621e-2141.12Tubulin alpha-4A chain OS=Macaca fascicularis GN=T... [more]
TBA4A_HUMAN3.621e-2141.12Tubulin alpha-4A chain OS=Homo sapiens GN=TUBA4A P... [more]
TBA4A_BOVIN3.621e-2141.12Tubulin alpha-4A chain OS=Bos taurus GN=TUBA4A PE=... [more]
TBA3E_HUMAN3.621e-2141.12Tubulin alpha-3E chain OS=Homo sapiens GN=TUBA3E P... [more]
TBA2_PATVU3.621e-2140.19Tubulin alpha-2/alpha-4 chain OS=Patella vulgata G... [more]
TBA2_MAIZE3.621e-2141.12Tubulin alpha-2 chain OS=Zea mays GN=TUBA2 PE=3 SV... [more]
TBA1_MAIZE3.621e-2141.12Tubulin alpha-1 chain OS=Zea mays GN=TUBA1 PE=3 SV... [more]
TBA1_ELEIN3.621e-2141.12Tubulin alpha-1 chain OS=Eleusine indica GN=TUBA1 ... [more]
TBA_BOMMO4.729e-2140.19Tubulin alpha chain OS=Bombyx mori PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-344 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503857 ID=CF503857; Name=CF503857; organism=Citrus sinensis; type=EST; length=328bp
GATAAATGAGAGAGATCTTGCACATTCAAGGAGGCCAATGCGGCAACCAA
ATCGGCTCCAAATTCTGGGAAGTCATTTGCGACGAGCATGGCGTGGACCC
CACGGGGAAGTATAGAGGTGACGGCGTTGAGGATCTTCAACTGGAGCGAA
TCAATGTCTATTACAACGAAGCTTCCGGTGGAAGGTACGTGCCTCGAGCT
GTTCTCATGGATCTTGAACCCGGTACCATGGATAGTATCAGATCCGGCCC
GTACGGCCAGATCTTTCGACCTGATAACTTCGTTTTTGGACAATCCGGTG
CGGGCAATAACTGGGCCAAAGGTCATTA
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