CF503857
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBG_CHLRE (Tubulin gamma chain OS=Chlamydomonas reinhardtii GN=TUBG PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 1.376e-20 Identity = 45/108 (41.67%), Postives = 70/108 (64.81%), Query Frame = 3 Query: 9 REILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGH 326 REI+++Q GQCGNQ+GS+FW +C EHG+ G R + L +R +V++ +A +Y+PRA+L+DLEP ++ I++ +F P+N + GAGNNWA G+ Sbjct: 3 REIINLQVGQCGNQVGSEFWRKLCQEHGIAKDG--RLEDFATLGGDRKDVFFYQADDEQYIPRAILLDLEPRVINGIQTSDLRNLFNPENIFISKEGGGAGNNWASGY 108
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA_XENTR (Tubulin alpha chain OS=Xenopus tropicalis GN=tuba PE=2 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 1.376e-20 Identity = 42/107 (39.25%), Postives = 65/107 (60.75%), Query Frame = 3 Query: 6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326 MRE + + GQ G Q+G+ WE+ C EHG+ P G+ D + +++E G++VPRAV +DLEP +D +R+G Y Q+F P+ + G+ A NN+A+GH Sbjct: 1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFSETGAGKHVPRAVFVDLEPTVIDEVRAGTYRQLFHPEQLITGKEDAANNYARGH 107
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA2_CAEEL (Tubulin alpha-2 chain OS=Caenorhabditis elegans GN=tba-2 PE=2 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 1.376e-20 Identity = 43/107 (40.19%), Postives = 65/107 (60.75%), Query Frame = 3 Query: 6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326 MRE++ I GQ G QIG+ WE+ C EHG+ P G + E ++++ GRYVPR++ +DLEP +D IR+G Y ++F P+ + G+ A NN+A+GH Sbjct: 1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPTQSTNEG--ESFTTFFSDTGSGRYVPRSIFVDLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYARGH 105
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBG_ENTHI (Tubulin gamma chain OS=Entamoeba histolytica PE=2 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 1.797e-20 Identity = 46/107 (42.99%), Postives = 71/107 (66.36%), Query Frame = 3 Query: 9 REILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVF-GQSGAGNNWAKGH 326 REI+ + GQCGNQ+GS+F++ IC EHG+ P G + D +R +V++ +A RYVPR++ +DLEP +DSIR+ + + P+NF+ +GAGN+WA G+ Sbjct: 3 REIITLNVGQCGNQLGSEFFKKICSEHGILPDGSLSTNEFID---DRKDVFFYQADDQRYVPRSINIDLEPRVLDSIRTSEWRNFYNPENFIIPTNNGAGNSWANGY 106
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA_AJECA (Tubulin alpha chain (Fragment) OS=Ajellomyces capsulata GN=TUB1 PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 1.797e-20 Identity = 41/107 (38.32%), Postives = 63/107 (58.88%), Query Frame = 3 Query: 6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326 MRE++ + GQ G QI + WE+ C EHG+ P G + + N +++E G+YVPR + DLEP +D +R+GPY +F P+ + G+ A NN+A+GH Sbjct: 1 MREVVSLNVGQAGGQIANSCWELYCLEHGIQPDGYLTEERKAADPDQGFNTFFSETGQGKYVPRTIYCDLEPNVVDEVRTGPYRALFHPEQMITGKEDASNNYARGH 107
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA8_CAEEL (Tubulin alpha-8 chain OS=Caenorhabditis elegans GN=tba-8 PE=2 SV=2) HSP 1 Score: 97.8265 bits (242), Expect = 1.797e-20 Identity = 44/106 (41.51%), Postives = 67/106 (63.21%), Query Frame = 3 Query: 9 REILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326 RE + I GQ G QIG+ WE+ C EHG+D G + + Q + + +++E+ G++VPRA+ +DLEP +D IR+G YG +F PD + G+ A NN+A+GH Sbjct: 6 RECVSIHIGQAGAQIGNACWELYCIEHGLDEAGFLKEEEKNKKQ-QSLQAFFSESMNGKHVPRAIYVDLEPTVLDEIRNGVYGNLFHPDQIINGKEDAANNYARGH 110
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA1_GOSHI (Tubulin alpha-1 chain OS=Gossypium hirsutum PE=2 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 1.797e-20 Identity = 42/107 (39.25%), Postives = 65/107 (60.75%), Query Frame = 3 Query: 6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326 MRE + I GQ G Q+G+ WE+ C EHG+ P G+ D + +++E G++VPRA+ +DLEP +D +R+G Y Q+F P+ + G+ A NN+A+GH Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFYTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGH 107
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBG2_EUPOC (Tubulin gamma-2 chain OS=Euplotes octocarinatus PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 2.347e-20 Identity = 46/108 (42.59%), Postives = 67/108 (62.04%), Query Frame = 3 Query: 9 REILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGH 326 REI+ Q GQCGNQIG +FW+ +C EHG++P G V +R +V++ +A YVPRAVL+DLEP ++ I+ Y ++ P+N + GAGNNW +G+ Sbjct: 3 REIITCQVGQCGNQIGMEFWKQLCMEHGINPEGILEDFAVNG--EDRKDVFFYQADDEHYVPRAVLIDLEPRVINGIQKSAYSSLYNPENIYIAKHGGGAGNNWGRGY 108
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBG1_EUPOC (Tubulin gamma-1 chain OS=Euplotes octocarinatus PE=2 SV=2) HSP 1 Score: 97.4413 bits (241), Expect = 2.347e-20 Identity = 46/108 (42.59%), Postives = 67/108 (62.04%), Query Frame = 3 Query: 9 REILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGH 326 REI+ Q GQCGNQIG +FW+ +C EHG++P G V +R +V++ +A YVPRAVL+DLEP ++ I+ Y ++ P+N + GAGNNW +G+ Sbjct: 3 REIITCQVGQCGNQIGMEFWKQLCMEHGINPEGILEDFAVNG--EDRKDVFFYQADDEHYVPRAVLIDLEPRVINGIQKSAYSSLYNPENIYIAKHGGGAGNNWGRGY 108
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA2_PELFA (Tubulin alpha-2 chain OS=Pelvetia fastigiata GN=TUBA2 PE=2 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 2.347e-20 Identity = 43/107 (40.19%), Postives = 64/107 (59.81%), Query Frame = 3 Query: 6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326 MRE + I GQ G Q G+ WE+ C EHG+ P G+ D + N +++E G++VPRAV +DLEP D +R+G Y Q++ P+ + G+ A NN+A+GH Sbjct: 1 MRECISIHIGQAGIQTGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRAVYVDLEPTVCDEVRTGTYRQLYHPEQIISGKEDAANNYARGH 107 The following BLAST results are available for this feature:
BLAST of CF503857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 402
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF503857 ID=CF503857; Name=CF503857; organism=Citrus sinensis; type=EST; length=328bpback to top |