CF503857

Overview
NameCF503857
Unique NameCF503857
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length328
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11134 contig Csv1_Contig11134:919..1246. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBG_CHLRE (Tubulin gamma chain OS=Chlamydomonas reinhardtii GN=TUBG PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.376e-20
Identity = 45/108 (41.67%), Postives = 70/108 (64.81%), Query Frame = 3
Query:    9 REILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGH 326
            REI+++Q GQCGNQ+GS+FW  +C EHG+   G  R +    L  +R +V++ +A   +Y+PRA+L+DLEP  ++ I++     +F P+N    +   GAGNNWA G+
Sbjct:    3 REIINLQVGQCGNQVGSEFWRKLCQEHGIAKDG--RLEDFATLGGDRKDVFFYQADDEQYIPRAILLDLEPRVINGIQTSDLRNLFNPENIFISKEGGGAGNNWASGY 108          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA_XENTR (Tubulin alpha chain OS=Xenopus tropicalis GN=tuba PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.376e-20
Identity = 42/107 (39.25%), Postives = 65/107 (60.75%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MRE + +  GQ G Q+G+  WE+ C EHG+ P G+   D       +    +++E   G++VPRAV +DLEP  +D +R+G Y Q+F P+  + G+  A NN+A+GH
Sbjct:    1 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFSETGAGKHVPRAVFVDLEPTVIDEVRAGTYRQLFHPEQLITGKEDAANNYARGH 107          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA2_CAEEL (Tubulin alpha-2 chain OS=Caenorhabditis elegans GN=tba-2 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.376e-20
Identity = 43/107 (40.19%), Postives = 65/107 (60.75%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MRE++ I  GQ G QIG+  WE+ C EHG+ P G        +   E    ++++   GRYVPR++ +DLEP  +D IR+G Y ++F P+  + G+  A NN+A+GH
Sbjct:    1 MREVISIHVGQAGVQIGNACWELYCLEHGIQPDGTMPTQSTNEG--ESFTTFFSDTGSGRYVPRSIFVDLEPTVVDEIRTGTYKKLFHPEQMITGKEDAANNYARGH 105          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBG_ENTHI (Tubulin gamma chain OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.797e-20
Identity = 46/107 (42.99%), Postives = 71/107 (66.36%), Query Frame = 3
Query:    9 REILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVF-GQSGAGNNWAKGH 326
            REI+ +  GQCGNQ+GS+F++ IC EHG+ P G    +   D   +R +V++ +A   RYVPR++ +DLEP  +DSIR+  +   + P+NF+    +GAGN+WA G+
Sbjct:    3 REIITLNVGQCGNQLGSEFFKKICSEHGILPDGSLSTNEFID---DRKDVFFYQADDQRYVPRSINIDLEPRVLDSIRTSEWRNFYNPENFIIPTNNGAGNSWANGY 106          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA_AJECA (Tubulin alpha chain (Fragment) OS=Ajellomyces capsulata GN=TUB1 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.797e-20
Identity = 41/107 (38.32%), Postives = 63/107 (58.88%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MRE++ +  GQ G QI +  WE+ C EHG+ P G    +       +  N +++E   G+YVPR +  DLEP  +D +R+GPY  +F P+  + G+  A NN+A+GH
Sbjct:    1 MREVVSLNVGQAGGQIANSCWELYCLEHGIQPDGYLTEERKAADPDQGFNTFFSETGQGKYVPRTIYCDLEPNVVDEVRTGPYRALFHPEQMITGKEDASNNYARGH 107          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA8_CAEEL (Tubulin alpha-8 chain OS=Caenorhabditis elegans GN=tba-8 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 1.797e-20
Identity = 44/106 (41.51%), Postives = 67/106 (63.21%), Query Frame = 3
Query:    9 REILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            RE + I  GQ G QIG+  WE+ C EHG+D  G  + +     Q + +  +++E+  G++VPRA+ +DLEP  +D IR+G YG +F PD  + G+  A NN+A+GH
Sbjct:    6 RECVSIHIGQAGAQIGNACWELYCIEHGLDEAGFLKEEEKNKKQ-QSLQAFFSESMNGKHVPRAIYVDLEPTVLDEIRNGVYGNLFHPDQIINGKEDAANNYARGH 110          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA1_GOSHI (Tubulin alpha-1 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.797e-20
Identity = 42/107 (39.25%), Postives = 65/107 (60.75%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MRE + I  GQ G Q+G+  WE+ C EHG+ P G+   D       +    +++E   G++VPRA+ +DLEP  +D +R+G Y Q+F P+  + G+  A NN+A+GH
Sbjct:    1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFYTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGH 107          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBG2_EUPOC (Tubulin gamma-2 chain OS=Euplotes octocarinatus PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.347e-20
Identity = 46/108 (42.59%), Postives = 67/108 (62.04%), Query Frame = 3
Query:    9 REILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGH 326
            REI+  Q GQCGNQIG +FW+ +C EHG++P G      V     +R +V++ +A    YVPRAVL+DLEP  ++ I+   Y  ++ P+N    +   GAGNNW +G+
Sbjct:    3 REIITCQVGQCGNQIGMEFWKQLCMEHGINPEGILEDFAVNG--EDRKDVFFYQADDEHYVPRAVLIDLEPRVINGIQKSAYSSLYNPENIYIAKHGGGAGNNWGRGY 108          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBG1_EUPOC (Tubulin gamma-1 chain OS=Euplotes octocarinatus PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 2.347e-20
Identity = 46/108 (42.59%), Postives = 67/108 (62.04%), Query Frame = 3
Query:    9 REILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGH 326
            REI+  Q GQCGNQIG +FW+ +C EHG++P G      V     +R +V++ +A    YVPRAVL+DLEP  ++ I+   Y  ++ P+N    +   GAGNNW +G+
Sbjct:    3 REIITCQVGQCGNQIGMEFWKQLCMEHGINPEGILEDFAVNG--EDRKDVFFYQADDEHYVPRAVLIDLEPRVINGIQKSAYSSLYNPENIYIAKHGGGAGNNWGRGY 108          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA2_PELFA (Tubulin alpha-2 chain OS=Pelvetia fastigiata GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.347e-20
Identity = 43/107 (40.19%), Postives = 64/107 (59.81%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MRE + I  GQ G Q G+  WE+ C EHG+ P G+   D       +  N +++E   G++VPRAV +DLEP   D +R+G Y Q++ P+  + G+  A NN+A+GH
Sbjct:    1 MRECISIHIGQAGIQTGNACWELYCLEHGIQPDGQMPSDKTIGGGDDAFNTFFSETGAGKHVPRAVYVDLEPTVCDEVRTGTYRQLYHPEQIISGKEDAANNYARGH 107          
The following BLAST results are available for this feature:
BLAST of CF503857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 402
Match NameE-valueIdentityDescription
TBG_CHLRE1.376e-2041.67Tubulin gamma chain OS=Chlamydomonas reinhardtii G... [more]
TBA_XENTR1.376e-2039.25Tubulin alpha chain OS=Xenopus tropicalis GN=tuba ... [more]
TBA2_CAEEL1.376e-2040.19Tubulin alpha-2 chain OS=Caenorhabditis elegans GN... [more]
TBG_ENTHI1.797e-2042.99Tubulin gamma chain OS=Entamoeba histolytica PE=2 ... [more]
TBA_AJECA1.797e-2038.32Tubulin alpha chain (Fragment) OS=Ajellomyces caps... [more]
TBA8_CAEEL1.797e-2041.51Tubulin alpha-8 chain OS=Caenorhabditis elegans GN... [more]
TBA1_GOSHI1.797e-2039.25Tubulin alpha-1 chain OS=Gossypium hirsutum PE=2 S... [more]
TBG2_EUPOC2.347e-2042.59Tubulin gamma-2 chain OS=Euplotes octocarinatus PE... [more]
TBG1_EUPOC2.347e-2042.59Tubulin gamma-1 chain OS=Euplotes octocarinatus PE... [more]
TBA2_PELFA2.347e-2040.19Tubulin alpha-2 chain OS=Pelvetia fastigiata GN=TU... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-344 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503857 ID=CF503857; Name=CF503857; organism=Citrus sinensis; type=EST; length=328bp
GATAAATGAGAGAGATCTTGCACATTCAAGGAGGCCAATGCGGCAACCAA
ATCGGCTCCAAATTCTGGGAAGTCATTTGCGACGAGCATGGCGTGGACCC
CACGGGGAAGTATAGAGGTGACGGCGTTGAGGATCTTCAACTGGAGCGAA
TCAATGTCTATTACAACGAAGCTTCCGGTGGAAGGTACGTGCCTCGAGCT
GTTCTCATGGATCTTGAACCCGGTACCATGGATAGTATCAGATCCGGCCC
GTACGGCCAGATCTTTCGACCTGATAACTTCGTTTTTGGACAATCCGGTG
CGGGCAATAACTGGGCCAAAGGTCATTA
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