CF503857

Overview
NameCF503857
Unique NameCF503857
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length328
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11134 contig Csv1_Contig11134:919..1246. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBG_EUPAE (Tubulin gamma chain OS=Euplotes aediculatus PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.066e-20
Identity = 46/108 (42.59%), Postives = 67/108 (62.04%), Query Frame = 3
Query:    9 REILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGH 326
            REI+  Q GQCGNQIG +FW+ +C EHG++P G      V     +R +V++ +A    YVPRAVL+DLEP  ++ I+   Y  ++ P+N    +   GAGNNW +G+
Sbjct:    3 REIITCQVGQCGNQIGMEFWKQLCMEHGINPEGILEDFAVNG--EDRKDVFFYQADDEHYVPRAVLIDLEPRVINCIQKSTYSSLYNPENIYIAKHGGGAGNNWGRGY 108          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBAA_SCHCO (Tubulin alpha-1A chain OS=Schizophyllum commune GN=TUB-1A PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.066e-20
Identity = 42/107 (39.25%), Postives = 67/107 (62.62%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MRE++ I  GQ G QIG+  WE+   EHG+ P G+   D       +  + +++E S G+YVPR++ +DLEP  +D +R+GPY  +F P+  + G+  A +N+A+GH
Sbjct:    1 MREVVSIHVGQAGVQIGNACWELYTIEHGLSPDGRLSDDSPSKHD-DGFSTFFSETSSGKYVPRSLYVDLEPNVIDEVRNGPYRSLFHPETMITGKEDAASNYARGH 106          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA8_RAT (Tubulin alpha-8 chain OS=Rattus norvegicus GN=Tuba8 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.066e-20
Identity = 41/107 (38.32%), Postives = 65/107 (60.75%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MRE + +  GQ G QIG+  WE+ C EHG+   G +     +    +    +++E   G++VPRAV++DLEP  +D +R+G Y Q+F P+  + G+  A NN+A+GH
Sbjct:    1 MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGTQASKINDDDSFTTFFSETGNGKHVPRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGH 107          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA8_MOUSE (Tubulin alpha-8 chain OS=Mus musculus GN=Tuba8 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.066e-20
Identity = 41/107 (38.32%), Postives = 65/107 (60.75%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MRE + +  GQ G QIG+  WE+ C EHG+   G +     +    +    +++E   G++VPRAV++DLEP  +D +R+G Y Q+F P+  + G+  A NN+A+GH
Sbjct:    1 MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFGTQASKINDDDSFTTFFSETGNGKHVPRAVMVDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGH 107          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBBP_DROME (Probable tubulin beta chain CG32396 OS=Drosophila melanogaster GN=CG32396 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.004e-20
Identity = 49/108 (45.37%), Postives = 69/108 (63.89%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVD-PTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+ +Q G  GN IG  FW VI  EHGVD  +G++   G   LQLERINV++N  +  R+  R +L+D E  T+  + +    Q++RP+NFV G   AGNN+A+G+
Sbjct:    1 MREIVTLQIGGAGNAIGDSFWHVISHEHGVDYASGRF--GGTSPLQLERINVFFNATASKRFYARTILIDTEASTIQRLNAS--SQLYRPENFVAGSESAGNNFARGY 104          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA2_STYLE (Tubulin alpha-2 chain OS=Stylonychia lemnae PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.004e-20
Identity = 41/107 (38.32%), Postives = 65/107 (60.75%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MRE++ I  GQ G Q+G+  WE+ C EHG+ P G+   +       +  N +++E   G++VPR V +DL P  +D +R+G Y Q+F P+  + G+  A NN+A+GH
Sbjct:    1 MREVISIHVGQAGIQVGNACWELFCLEHGIQPDGQMPSNKTIGGGDDAFNTFFSETGTGKHVPRCVFLDLGPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGH 107          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA1_SCHPO (Tubulin alpha-1 chain OS=Schizosaccharomyces pombe GN=nda2 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 4.004e-20
Identity = 45/115 (39.13%), Postives = 69/115 (60.00%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASG--------GRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MRE++ +  GQ G QIG+  WE+ C EHG+ P G       E+ ++ + N Y N+  G        G++VPR++ +DLEP  +D +R+GPY  +F P+  V G+  A NN+A+GH
Sbjct:    1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDGF----PTENSEVHKNNSYLNDGFGTFFSETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGH 111          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBG2_DROME (Tubulin gamma-2 chain OS=Drosophila melanogaster GN=gammaTub37C PE=1 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 5.229e-20
Identity = 47/106 (44.34%), Postives = 69/106 (65.09%), Query Frame = 3
Query:   12 EILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQ--SGAGNNWAKG 323
            EI+ +Q GQCGNQIG +FW+ +C EHG+ P G    D   D Q +R +V++ +A    Y+PRAVL+DLEP  +++I + PY +++  +N    +   GAGNNWA G
Sbjct:    4 EIITLQLGQCGNQIGFEFWKRLCLEHGISPDGVLE-DFATDGQ-DRKDVFFYQADDNHYIPRAVLIDLEPRVINNIMTSPYSKLYNQENVFLSKHGGGAGNNWASG 107          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA1_EMENI (Tubulin alpha-1 chain OS=Emericella nidulans GN=tubA PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 5.229e-20
Identity = 40/107 (37.38%), Postives = 64/107 (59.81%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MRE++ +  GQ G QI +  WE+ C EHG+ P G    +  ++      + +++E   G+YVPR +  DLEP  +D +R+G Y  +F P+N + G+  A NN+A+GH
Sbjct:    1 MREVISLNVGQAGCQIANSCWELYCLEHGIQPDGYLTEERKKEDPDHGFSTFFSETGQGKYVPRTIYADLEPNVVDEVRTGTYRSLFHPENLITGKEDASNNYARGH 107          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA_CANAL (Tubulin alpha chain OS=Candida albicans GN=TUB1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.829e-20
Identity = 44/109 (40.37%), Postives = 69/109 (63.30%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQ--LERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MRE++ I  GQ G QIG+  WE+   EHG+ P G Y  +G++  +   E  + +++E   G+YVPRA+ +DLEP  +D +R+G Y  +F P+  + G+  A NN+A+GH
Sbjct:    1 MREVISINVGQAGCQIGNACWELYSQEHGIRPDG-YLQEGLDRPKGGEEGFSTFFSETGSGKYVPRALYVDLEPNVIDEVRTGVYKDLFHPEQLIAGKEDAANNYARGH 108          
The following BLAST results are available for this feature:
BLAST of CF503857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 402
Match NameE-valueIdentityDescription
TBG_EUPAE3.066e-2042.59Tubulin gamma chain OS=Euplotes aediculatus PE=2 S... [more]
TBAA_SCHCO3.066e-2039.25Tubulin alpha-1A chain OS=Schizophyllum commune GN... [more]
TBA8_RAT3.066e-2038.32Tubulin alpha-8 chain OS=Rattus norvegicus GN=Tuba... [more]
TBA8_MOUSE3.066e-2038.32Tubulin alpha-8 chain OS=Mus musculus GN=Tuba8 PE=... [more]
TBBP_DROME4.004e-2045.37Probable tubulin beta chain CG32396 OS=Drosophila ... [more]
TBA2_STYLE4.004e-2038.32Tubulin alpha-2 chain OS=Stylonychia lemnae PE=3 S... [more]
TBA1_SCHPO4.004e-2039.13Tubulin alpha-1 chain OS=Schizosaccharomyces pombe... [more]
TBG2_DROME5.229e-2044.34Tubulin gamma-2 chain OS=Drosophila melanogaster G... [more]
TBA1_EMENI5.229e-2037.38Tubulin alpha-1 chain OS=Emericella nidulans GN=tu... [more]
TBA_CANAL6.829e-2040.37Tubulin alpha chain OS=Candida albicans GN=TUB1 PE... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-344 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503857 ID=CF503857; Name=CF503857; organism=Citrus sinensis; type=EST; length=328bp
GATAAATGAGAGAGATCTTGCACATTCAAGGAGGCCAATGCGGCAACCAA
ATCGGCTCCAAATTCTGGGAAGTCATTTGCGACGAGCATGGCGTGGACCC
CACGGGGAAGTATAGAGGTGACGGCGTTGAGGATCTTCAACTGGAGCGAA
TCAATGTCTATTACAACGAAGCTTCCGGTGGAAGGTACGTGCCTCGAGCT
GTTCTCATGGATCTTGAACCCGGTACCATGGATAGTATCAGATCCGGCCC
GTACGGCCAGATCTTTCGACCTGATAACTTCGTTTTTGGACAATCCGGTG
CGGGCAATAACTGGGCCAAAGGTCATTA
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