CF503857

Overview
NameCF503857
Unique NameCF503857
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length328
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11134 contig Csv1_Contig11134:919..1246. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBG1_ARATH (Tubulin gamma-1 chain OS=Arabidopsis thaliana GN=TUBG1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.197e-18
Identity = 45/111 (40.54%), Postives = 68/111 (61.26%), Query Frame = 3
Query:    9 REILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQL---ERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGH 326
            REI+ +Q GQCGNQIG +FW+ +C EHG+   G      +ED      +R +V++ +A    Y+PRA+L+DLEP  ++ I++G Y  ++  +N        GAGNNWA G+
Sbjct:    3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGI-----LEDFATQGGDRKDVFFYQADDQHYIPRALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASGY 108          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA_GLOLA (Tubulin alpha chain OS=Glomerella lagenarium GN=TUB1 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.869e-18
Identity = 40/105 (38.10%), Postives = 63/105 (60.00%), Query Frame = 3
Query:   12 EILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            EILH+  GQ G Q+G+  WE+   EHG+   G+      + +       ++ E S G+YVPR++ +DL+P  +D IR+G Y Q+F P+  + G+  A NN+A+GH
Sbjct:    4 EILHLHLGQAGTQLGNSAWELYLLEHGLGHDGRPDPSAKDVVDGGSYETFFTETSNGKYVPRSLFVDLDPSPIDEIRTGGYRQLFHPELLISGKEDAANNYARGH 108          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBG_RETFI (Tubulin gamma chain OS=Reticulomyxa filosa PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.747e-18
Identity = 43/108 (39.81%), Postives = 67/108 (62.04%), Query Frame = 3
Query:    9 REILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGH 326
            REI+ +Q GQCGNQIG++FW  +  EHG+ P G  +    E    +R +V++ +A    Y+PRA+L+DLEP  ++S++   +  ++ P+N        GAGNNWA G+
Sbjct:    3 REIITLQVGQCGNQIGTEFWGRLIAEHGIGPDGIVKEFATEG--TDRKDVFFYQADDQHYIPRALLIDLEPRVINSLQESEFKNLWNPENVYIDSQGGGAGNNWAVGY 108          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBG2_ORYSJ (Tubulin gamma-2 chain OS=Oryza sativa subsp. japonica GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.747e-18
Identity = 45/111 (40.54%), Postives = 68/111 (61.26%), Query Frame = 3
Query:    9 REILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQL---ERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGH 326
            REI+ IQ GQCGNQIG +FW+ +C EHG+   G      +ED      +R +V++ +A    Y+PRA+L+DLEP  ++ I++  Y  ++  +N    +   GAGNNWA G+
Sbjct:    3 REIITIQVGQCGNQIGMEFWKQLCLEHGIGKDGL-----LEDFATQGGDRKDVFFYQADDQHYIPRALLVDLEPRVINGIQNSEYRNLYNHENIFVAEHGGGAGNNWASGY 108          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBAL3_HUMAN (Tubulin alpha chain-like 3 OS=Homo sapiens GN=TUBAL3 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 3.747e-18
Identity = 45/113 (39.82%), Postives = 67/113 (59.29%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKY---RGDGVEDLQLERINV----YYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKG 323
            MRE L I  GQ G QIG   WE+ C EHG+ P G     + D +E+ ++E  N     ++ E   G++VPRA+ +DLEP  +D IR+G +  +F P+  + G+  A NN+A+G
Sbjct:    1 MRECLSIHIGQAGIQIGDACWELYCLEHGIQPNGVVLDTQQDQLENAKMEHTNASFDTFFCETRAGKHVPRALFVDLEPTVIDGIRTGQHRSLFHPEQLLSGKEDAANNYARG 113          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBG_PHYPA (Tubulin gamma chain OS=Physcomitrella patens GN=TUBG1 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.894e-18
Identity = 45/111 (40.54%), Postives = 68/111 (61.26%), Query Frame = 3
Query:    9 REILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQL---ERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGH 326
            REI+ +Q GQCGNQIG +FW+ +C EHG+   G      +ED      +R +V++ +A    Y+PRA+L+DLEP  ++SI++  Y  ++  +N        GAGNNWA G+
Sbjct:    3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGI-----LEDFATQGGDRKDVFFYQADDEHYIPRALLIDLEPRVINSIQNSEYRNLYNHENVFVADHGGGAGNNWASGY 108          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBG_ANEPH (Tubulin gamma chain OS=Anemia phyllitidis GN=TUBG PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.392e-18
Identity = 44/111 (39.64%), Postives = 67/111 (60.36%), Query Frame = 3
Query:    9 REILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQL---ERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGH 326
            REI+ +Q GQCGNQIG +FW+ +C EHG+   G      +ED      +R +V++ +A    Y+PRA+L+DLEP  ++ I++  Y  ++  +N        GAGNNWA G+
Sbjct:    3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKEGM-----LEDFATQGGDRKDVFFYQADDEHYIPRALLLDLEPRVINGIQNSEYRNLYNHENVFVADHGGGAGNNWASGY 108          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA6_NAEGR (Tubulin alpha-6 chain OS=Naegleria gruberi GN=TUBA6 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.348e-18
Identity = 40/107 (37.38%), Postives = 64/107 (59.81%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI++I  GQ G Q G + W ++C EHG++  G               +V ++E S G+YVPR +++DLEP  +DS+R+  Y +++ P   + G+  A NN+A+GH
Sbjct:    1 MREIINIHIGQAGIQAGEQVWSLMCAEHGINQDGTRNSTSANGNS--DCSVLFSEGSRGKYVPRNLMVDLEPSVVDSVRNSSYKELYHPAQMITGREDAANNFARGH 105          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA1_ENTHI (Tubulin alpha-1 chain OS=Entamoeba histolytica GN=TUB1 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.090e-17
Identity = 41/112 (36.61%), Postives = 65/112 (58.04%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQL------ERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKG 323
            MRE++ I  GQ G Q+G+K WE+ C EHG+ P G    +  E   +         N ++ E   GR+VPRA+ +D EP  +D I++G Y  ++ P++ + G+  A +N+AKG
Sbjct:    1 MREVITINIGQAGCQLGNKCWELFCLEHGIQPDGTAIANSNEKRSVITGGIDTAYNAFFQELQNGRHVPRAIFVDTEPTVIDEIKTGEYCGLYHPEHLICGKEDASSNFAKG 112          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA3_YEAST (Tubulin alpha-3 chain OS=Saccharomyces cerevisiae GN=TUB3 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.860e-17
Identity = 41/109 (37.61%), Postives = 67/109 (61.47%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQ--LERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MRE++ I  GQ G QIG+  WE+   EHG+   G    DG+   +   E  + +++E   G++VPRA+ +DLEP  +D +R+G + ++F P+  + G+  A NN+A+GH
Sbjct:    1 MREVISINVGQAGCQIGNACWELYSLEHGIKEDGHLE-DGLSKPKGGEEGFSTFFHETGYGKFVPRAIYVDLEPNVIDEVRTGRFKELFHPEQLINGKEDAANNYARGH 108          
The following BLAST results are available for this feature:
BLAST of CF503857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 402
Match NameE-valueIdentityDescription
TBG1_ARATH2.197e-1840.54Tubulin gamma-1 chain OS=Arabidopsis thaliana GN=T... [more]
TBA_GLOLA2.869e-1838.10Tubulin alpha chain OS=Glomerella lagenarium GN=TU... [more]
TBG_RETFI3.747e-1839.81Tubulin gamma chain OS=Reticulomyxa filosa PE=2 SV... [more]
TBG2_ORYSJ3.747e-1840.54Tubulin gamma-2 chain OS=Oryza sativa subsp. japon... [more]
TBAL3_HUMAN3.747e-1839.82Tubulin alpha chain-like 3 OS=Homo sapiens GN=TUBA... [more]
TBG_PHYPA4.894e-1840.54Tubulin gamma chain OS=Physcomitrella patens GN=TU... [more]
TBG_ANEPH6.392e-1839.64Tubulin gamma chain OS=Anemia phyllitidis GN=TUBG ... [more]
TBA6_NAEGR8.348e-1837.38Tubulin alpha-6 chain OS=Naegleria gruberi GN=TUBA... [more]
TBA1_ENTHI1.090e-1736.61Tubulin alpha-1 chain OS=Entamoeba histolytica GN=... [more]
TBA3_YEAST1.860e-1737.61Tubulin alpha-3 chain OS=Saccharomyces cerevisiae ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-344 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503857 ID=CF503857; Name=CF503857; organism=Citrus sinensis; type=EST; length=328bp
GATAAATGAGAGAGATCTTGCACATTCAAGGAGGCCAATGCGGCAACCAA
ATCGGCTCCAAATTCTGGGAAGTCATTTGCGACGAGCATGGCGTGGACCC
CACGGGGAAGTATAGAGGTGACGGCGTTGAGGATCTTCAACTGGAGCGAA
TCAATGTCTATTACAACGAAGCTTCCGGTGGAAGGTACGTGCCTCGAGCT
GTTCTCATGGATCTTGAACCCGGTACCATGGATAGTATCAGATCCGGCCC
GTACGGCCAGATCTTTCGACCTGATAACTTCGTTTTTGGACAATCCGGTG
CGGGCAATAACTGGGCCAAAGGTCATTA
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