CF503857
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBG1_ARATH (Tubulin gamma-1 chain OS=Arabidopsis thaliana GN=TUBG1 PE=2 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 2.197e-18 Identity = 45/111 (40.54%), Postives = 68/111 (61.26%), Query Frame = 3 Query: 9 REILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQL---ERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGH 326 REI+ +Q GQCGNQIG +FW+ +C EHG+ G +ED +R +V++ +A Y+PRA+L+DLEP ++ I++G Y ++ +N GAGNNWA G+ Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGI-----LEDFATQGGDRKDVFFYQADDQHYIPRALLIDLEPRVINGIQNGDYRNLYNHENIFVADHGGGAGNNWASGY 108
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA_GLOLA (Tubulin alpha chain OS=Glomerella lagenarium GN=TUB1 PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 2.869e-18 Identity = 40/105 (38.10%), Postives = 63/105 (60.00%), Query Frame = 3 Query: 12 EILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326 EILH+ GQ G Q+G+ WE+ EHG+ G+ + + ++ E S G+YVPR++ +DL+P +D IR+G Y Q+F P+ + G+ A NN+A+GH Sbjct: 4 EILHLHLGQAGTQLGNSAWELYLLEHGLGHDGRPDPSAKDVVDGGSYETFFTETSNGKYVPRSLFVDLDPSPIDEIRTGGYRQLFHPELLISGKEDAANNYARGH 108
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBG_RETFI (Tubulin gamma chain OS=Reticulomyxa filosa PE=2 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 3.747e-18 Identity = 43/108 (39.81%), Postives = 67/108 (62.04%), Query Frame = 3 Query: 9 REILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGH 326 REI+ +Q GQCGNQIG++FW + EHG+ P G + E +R +V++ +A Y+PRA+L+DLEP ++S++ + ++ P+N GAGNNWA G+ Sbjct: 3 REIITLQVGQCGNQIGTEFWGRLIAEHGIGPDGIVKEFATEG--TDRKDVFFYQADDQHYIPRALLIDLEPRVINSLQESEFKNLWNPENVYIDSQGGGAGNNWAVGY 108
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBG2_ORYSJ (Tubulin gamma-2 chain OS=Oryza sativa subsp. japonica GN=TUBG2 PE=2 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 3.747e-18 Identity = 45/111 (40.54%), Postives = 68/111 (61.26%), Query Frame = 3 Query: 9 REILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQL---ERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGH 326 REI+ IQ GQCGNQIG +FW+ +C EHG+ G +ED +R +V++ +A Y+PRA+L+DLEP ++ I++ Y ++ +N + GAGNNWA G+ Sbjct: 3 REIITIQVGQCGNQIGMEFWKQLCLEHGIGKDGL-----LEDFATQGGDRKDVFFYQADDQHYIPRALLVDLEPRVINGIQNSEYRNLYNHENIFVAEHGGGAGNNWASGY 108
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBAL3_HUMAN (Tubulin alpha chain-like 3 OS=Homo sapiens GN=TUBAL3 PE=1 SV=2) HSP 1 Score: 90.1225 bits (222), Expect = 3.747e-18 Identity = 45/113 (39.82%), Postives = 67/113 (59.29%), Query Frame = 3 Query: 6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKY---RGDGVEDLQLERINV----YYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKG 323 MRE L I GQ G QIG WE+ C EHG+ P G + D +E+ ++E N ++ E G++VPRA+ +DLEP +D IR+G + +F P+ + G+ A NN+A+G Sbjct: 1 MRECLSIHIGQAGIQIGDACWELYCLEHGIQPNGVVLDTQQDQLENAKMEHTNASFDTFFCETRAGKHVPRALFVDLEPTVIDGIRTGQHRSLFHPEQLLSGKEDAANNYARG 113
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBG_PHYPA (Tubulin gamma chain OS=Physcomitrella patens GN=TUBG1 PE=3 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 4.894e-18 Identity = 45/111 (40.54%), Postives = 68/111 (61.26%), Query Frame = 3 Query: 9 REILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQL---ERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGH 326 REI+ +Q GQCGNQIG +FW+ +C EHG+ G +ED +R +V++ +A Y+PRA+L+DLEP ++SI++ Y ++ +N GAGNNWA G+ Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKDGI-----LEDFATQGGDRKDVFFYQADDEHYIPRALLIDLEPRVINSIQNSEYRNLYNHENVFVADHGGGAGNNWASGY 108
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBG_ANEPH (Tubulin gamma chain OS=Anemia phyllitidis GN=TUBG PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 6.392e-18 Identity = 44/111 (39.64%), Postives = 67/111 (60.36%), Query Frame = 3 Query: 9 REILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQL---ERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGH 326 REI+ +Q GQCGNQIG +FW+ +C EHG+ G +ED +R +V++ +A Y+PRA+L+DLEP ++ I++ Y ++ +N GAGNNWA G+ Sbjct: 3 REIITLQVGQCGNQIGMEFWKQLCLEHGISKEGM-----LEDFATQGGDRKDVFFYQADDEHYIPRALLLDLEPRVINGIQNSEYRNLYNHENVFVADHGGGAGNNWASGY 108
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA6_NAEGR (Tubulin alpha-6 chain OS=Naegleria gruberi GN=TUBA6 PE=2 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 8.348e-18 Identity = 40/107 (37.38%), Postives = 64/107 (59.81%), Query Frame = 3 Query: 6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326 MREI++I GQ G Q G + W ++C EHG++ G +V ++E S G+YVPR +++DLEP +DS+R+ Y +++ P + G+ A NN+A+GH Sbjct: 1 MREIINIHIGQAGIQAGEQVWSLMCAEHGINQDGTRNSTSANGNS--DCSVLFSEGSRGKYVPRNLMVDLEPSVVDSVRNSSYKELYHPAQMITGREDAANNFARGH 105
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA1_ENTHI (Tubulin alpha-1 chain OS=Entamoeba histolytica GN=TUB1 PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 1.090e-17 Identity = 41/112 (36.61%), Postives = 65/112 (58.04%), Query Frame = 3 Query: 6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQL------ERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKG 323 MRE++ I GQ G Q+G+K WE+ C EHG+ P G + E + N ++ E GR+VPRA+ +D EP +D I++G Y ++ P++ + G+ A +N+AKG Sbjct: 1 MREVITINIGQAGCQLGNKCWELFCLEHGIQPDGTAIANSNEKRSVITGGIDTAYNAFFQELQNGRHVPRAIFVDTEPTVIDEIKTGEYCGLYHPEHLICGKEDASSNFAKG 112
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA3_YEAST (Tubulin alpha-3 chain OS=Saccharomyces cerevisiae GN=TUB3 PE=1 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 1.860e-17 Identity = 41/109 (37.61%), Postives = 67/109 (61.47%), Query Frame = 3 Query: 6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQ--LERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326 MRE++ I GQ G QIG+ WE+ EHG+ G DG+ + E + +++E G++VPRA+ +DLEP +D +R+G + ++F P+ + G+ A NN+A+GH Sbjct: 1 MREVISINVGQAGCQIGNACWELYSLEHGIKEDGHLE-DGLSKPKGGEEGFSTFFHETGYGKFVPRAIYVDLEPNVIDEVRTGRFKELFHPEQLINGKEDAANNYARGH 108 The following BLAST results are available for this feature:
BLAST of CF503857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 402
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Sequences
The
following sequences are available for this feature:
EST sequence >CF503857 ID=CF503857; Name=CF503857; organism=Citrus sinensis; type=EST; length=328bpback to top |