CF503857
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBG2_MAIZE (Tubulin gamma-2 chain OS=Zea mays GN=TUBG2 PE=2 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 2.429e-17 Identity = 43/111 (38.74%), Postives = 68/111 (61.26%), Query Frame = 3 Query: 9 REILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQL---ERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGH 326 REI+ IQ GQCGNQIG +FW+ +C EHG+ G +ED +R +V++ +A ++PR++L+DLEP ++ I++ Y ++ +N + GAGNNWA G+ Sbjct: 3 REIITIQVGQCGNQIGMEFWKQLCLEHGIGKDGL-----LEDFATQGGDRKDVFFYQADDQHFIPRSLLIDLEPRVINGIQNSEYRNLYNHENIFVAEHGGGAGNNWASGY 108
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBG1_MAIZE (Tubulin gamma-1 chain OS=Zea mays GN=TUBG1 PE=2 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 2.429e-17 Identity = 43/111 (38.74%), Postives = 68/111 (61.26%), Query Frame = 3 Query: 9 REILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQL---ERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGH 326 REI+ IQ GQCGNQIG +FW+ +C EHG+ G +ED +R +V++ +A ++PR++L+DLEP ++ I++ Y ++ +N + GAGNNWA G+ Sbjct: 3 REIITIQVGQCGNQIGMEFWKQLCLEHGIGKDGL-----LEDFATQGGDRKDVFFYQADDQHFIPRSLLIDLEPRVINGIQNSEYRNLYNHENIFVAEHGGGAGNNWASGY 108
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBG_CANGA (Tubulin gamma chain OS=Candida glabrata GN=TUB4 PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 4.581e-16 Identity = 41/109 (37.61%), Postives = 64/109 (58.72%), Query Frame = 3 Query: 12 EILHIQGGQCGNQIGSKFWEVICDEHGVDPTG--KYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQS--GAGNNWAKGH 326 EI+ IQ GQCGN +G FW + EHG+D G KY D + ++ + N ++ + + RYVPRA+++DLEP + ++S + +F P N GAGN+W+ G+ Sbjct: 4 EIITIQVGQCGNHVGKYFWNQLLKEHGIDKDGYSKY-NDDLTHIREDDTNPFFKQITNNRYVPRAIMIDLEPAAVTDVQSS-FNDLFNPRNTWVSSEGLGAGNSWSTGY 110
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA_PICAB (Tubulin alpha chain (Fragment) OS=Picea abies GN=TUBA PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 7.814e-16 Identity = 34/87 (39.08%), Postives = 53/87 (60.92%), Query Frame = 3 Query: 66 WEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326 WE+ EHG+ P G D + + N +++E G++VPRAV +DLEP +D +R+G Y Q+F P+ + G+ A NN+A+GH Sbjct: 2 WELYWLEHGIQPDGMMPSDTTVGVGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGH 88
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA4_DROME (Tubulin alpha-4 chain OS=Drosophila melanogaster GN=alphaTub67C PE=1 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 2.273e-15 Identity = 39/117 (33.33%), Postives = 63/117 (53.85%), Query Frame = 3 Query: 6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYR--------GDGVE---DLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKG 323 MRE++ IQ GQCG QIG+ WE+ EHG++ G + G D ++ E G+ VPR++ +DLEP +D +R+G +++ P+ + G+ A NN+A+G Sbjct: 1 MREVVSIQIGQCGIQIGNACWELYLLEHGINLDGSLKTKEELTASGSSASVGHDTSANDARTFFTETGNGKQVPRSIFVDLEPTVIDDVRNGCMRELYHPEQLISGKEDAANNYARG 117
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBG_CAEEL (Tubulin gamma chain OS=Caenorhabditis elegans GN=tbg-1 PE=1 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 6.615e-15 Identity = 39/107 (36.45%), Postives = 61/107 (57.01%), Query Frame = 3 Query: 15 ILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGP-YGQIFRPDNFVFGQ--SGAGNNWAKGH 326 ++ + GQCGNQ+ FW+ + DEHG++ G+ ED ++ ++ + +A YVPRAVL+DLEP ++ + P + +F DN GAGNNWA G+ Sbjct: 7 LMTVHVGQCGNQLAQAFWKSMVDEHGINERGQTTH---EDDMNDKKDLLFYQADDDHYVPRAVLVDLEPRVINGMMQSPNFSNLFNTDNIFMSDHGGGAGNNWASGY 110
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBG_ENCCU (Tubulin gamma chain OS=Encephalitozoon cuniculi GN=TUB4 PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 1.474e-14 Identity = 41/109 (37.61%), Postives = 63/109 (57.80%), Query Frame = 3 Query: 6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGH 326 MRE++ +Q GQCGNQ+G++FW+ +C EHG+ G + DL +R +V++ +A +VPRA+L+DLEP + S F ++ GAGNNW G+ Sbjct: 1 MREVVTLQVGQCGNQMGAEFWKTLCKEHGISMCGVLQDS--RDLG-DRKDVFFYQADDNVFVPRAILVDLEPRVISQAPS-----FFSQESIFLSNEGGGAGNNWGHGY 101
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA_ENCHE (Tubulin alpha chain (Fragment) OS=Encephalitozoon hellem GN=TUB1 PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 1.247e-13 Identity = 31/83 (37.35%), Postives = 54/83 (65.06%), Query Frame = 3 Query: 78 CDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326 C EHG+ P G+ + ++D E ++++ S G YVPR +++DLEPG ++SI++G Y +++ P + G+ A NN+A+GH Sbjct: 3 CKEHGILPDGRLDQNRMDD---ESAESFFSQTSVGTYVPRTLMVDLEPGVLESIKTGKYRELYHPGQLISGKEDAANNYARGH 82
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB_HALDI (Tubulin beta chain (Fragment) OS=Haliotis discus PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 4.013e-12 Identity = 29/31 (93.55%), Postives = 31/31 (100.00%), Query Frame = 3 Query: 234 SIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326 S+RSGP+GQIFRPDNFVFGQSGAGNNWAKGH Sbjct: 1 SVRSGPFGQIFRPDNFVFGQSGAGNNWAKGH 31
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBG_ASHGO (Tubulin gamma chain OS=Ashbya gossypii GN=TUB4 PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 8.940e-12 Identity = 36/108 (33.33%), Postives = 59/108 (54.63%), Query Frame = 3 Query: 12 EILHIQGGQCGNQIGSKFWEVICDEHGVDPTGK-YRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQS--GAGNNWAKGH 326 EI+ IQ GQCGNQ+G +FW + EHG+ G+ + ++ + NV++ + R+ PRA+L DLEP + +++ + F N + GAGN W+ G+ Sbjct: 4 EIISIQVGQCGNQVGKQFWGQLAREHGIGVDGQSLHPEDANVVREDDTNVFFRQNDHNRFTPRALLYDLEPSAIGDVQN-CFPGFFNERNVWISKEELGAGNTWSIGY 110 The following BLAST results are available for this feature:
BLAST of CF503857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 402
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Sequences
The
following sequences are available for this feature:
EST sequence >CF503857 ID=CF503857; Name=CF503857; organism=Citrus sinensis; type=EST; length=328bpback to top |