CF503857

Overview
NameCF503857
Unique NameCF503857
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length328
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11134 contig Csv1_Contig11134:919..1246. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBG2_MAIZE (Tubulin gamma-2 chain OS=Zea mays GN=TUBG2 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.429e-17
Identity = 43/111 (38.74%), Postives = 68/111 (61.26%), Query Frame = 3
Query:    9 REILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQL---ERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGH 326
            REI+ IQ GQCGNQIG +FW+ +C EHG+   G      +ED      +R +V++ +A    ++PR++L+DLEP  ++ I++  Y  ++  +N    +   GAGNNWA G+
Sbjct:    3 REIITIQVGQCGNQIGMEFWKQLCLEHGIGKDGL-----LEDFATQGGDRKDVFFYQADDQHFIPRSLLIDLEPRVINGIQNSEYRNLYNHENIFVAEHGGGAGNNWASGY 108          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBG1_MAIZE (Tubulin gamma-1 chain OS=Zea mays GN=TUBG1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.429e-17
Identity = 43/111 (38.74%), Postives = 68/111 (61.26%), Query Frame = 3
Query:    9 REILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQL---ERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGH 326
            REI+ IQ GQCGNQIG +FW+ +C EHG+   G      +ED      +R +V++ +A    ++PR++L+DLEP  ++ I++  Y  ++  +N    +   GAGNNWA G+
Sbjct:    3 REIITIQVGQCGNQIGMEFWKQLCLEHGIGKDGL-----LEDFATQGGDRKDVFFYQADDQHFIPRSLLIDLEPRVINGIQNSEYRNLYNHENIFVAEHGGGAGNNWASGY 108          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBG_CANGA (Tubulin gamma chain OS=Candida glabrata GN=TUB4 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.581e-16
Identity = 41/109 (37.61%), Postives = 64/109 (58.72%), Query Frame = 3
Query:   12 EILHIQGGQCGNQIGSKFWEVICDEHGVDPTG--KYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQS--GAGNNWAKGH 326
            EI+ IQ GQCGN +G  FW  +  EHG+D  G  KY  D +  ++ +  N ++ + +  RYVPRA+++DLEP  +  ++S  +  +F P N        GAGN+W+ G+
Sbjct:    4 EIITIQVGQCGNHVGKYFWNQLLKEHGIDKDGYSKY-NDDLTHIREDDTNPFFKQITNNRYVPRAIMIDLEPAAVTDVQSS-FNDLFNPRNTWVSSEGLGAGNSWSTGY 110          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA_PICAB (Tubulin alpha chain (Fragment) OS=Picea abies GN=TUBA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.814e-16
Identity = 34/87 (39.08%), Postives = 53/87 (60.92%), Query Frame = 3
Query:   66 WEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            WE+   EHG+ P G    D    +  +  N +++E   G++VPRAV +DLEP  +D +R+G Y Q+F P+  + G+  A NN+A+GH
Sbjct:    2 WELYWLEHGIQPDGMMPSDTTVGVGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGH 88          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA4_DROME (Tubulin alpha-4 chain OS=Drosophila melanogaster GN=alphaTub67C PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.273e-15
Identity = 39/117 (33.33%), Postives = 63/117 (53.85%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYR--------GDGVE---DLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKG 323
            MRE++ IQ GQCG QIG+  WE+   EHG++  G  +        G       D        ++ E   G+ VPR++ +DLEP  +D +R+G   +++ P+  + G+  A NN+A+G
Sbjct:    1 MREVVSIQIGQCGIQIGNACWELYLLEHGINLDGSLKTKEELTASGSSASVGHDTSANDARTFFTETGNGKQVPRSIFVDLEPTVIDDVRNGCMRELYHPEQLISGKEDAANNYARG 117          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBG_CAEEL (Tubulin gamma chain OS=Caenorhabditis elegans GN=tbg-1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.615e-15
Identity = 39/107 (36.45%), Postives = 61/107 (57.01%), Query Frame = 3
Query:   15 ILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGP-YGQIFRPDNFVFGQ--SGAGNNWAKGH 326
            ++ +  GQCGNQ+   FW+ + DEHG++  G+      ED   ++ ++ + +A    YVPRAVL+DLEP  ++ +   P +  +F  DN        GAGNNWA G+
Sbjct:    7 LMTVHVGQCGNQLAQAFWKSMVDEHGINERGQTTH---EDDMNDKKDLLFYQADDDHYVPRAVLVDLEPRVINGMMQSPNFSNLFNTDNIFMSDHGGGAGNNWASGY 110          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBG_ENCCU (Tubulin gamma chain OS=Encephalitozoon cuniculi GN=TUB4 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.474e-14
Identity = 41/109 (37.61%), Postives = 63/109 (57.80%), Query Frame = 3
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQ--SGAGNNWAKGH 326
            MRE++ +Q GQCGNQ+G++FW+ +C EHG+   G  +     DL  +R +V++ +A    +VPRA+L+DLEP  +    S      F  ++        GAGNNW  G+
Sbjct:    1 MREVVTLQVGQCGNQMGAEFWKTLCKEHGISMCGVLQDS--RDLG-DRKDVFFYQADDNVFVPRAILVDLEPRVISQAPS-----FFSQESIFLSNEGGGAGNNWGHGY 101          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBA_ENCHE (Tubulin alpha chain (Fragment) OS=Encephalitozoon hellem GN=TUB1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.247e-13
Identity = 31/83 (37.35%), Postives = 54/83 (65.06%), Query Frame = 3
Query:   78 CDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            C EHG+ P G+   + ++D   E    ++++ S G YVPR +++DLEPG ++SI++G Y +++ P   + G+  A NN+A+GH
Sbjct:    3 CKEHGILPDGRLDQNRMDD---ESAESFFSQTSVGTYVPRTLMVDLEPGVLESIKTGKYRELYHPGQLISGKEDAANNYARGH 82          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB_HALDI (Tubulin beta chain (Fragment) OS=Haliotis discus PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.013e-12
Identity = 29/31 (93.55%), Postives = 31/31 (100.00%), Query Frame = 3
Query:  234 SIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            S+RSGP+GQIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 SVRSGPFGQIFRPDNFVFGQSGAGNNWAKGH 31          
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBG_ASHGO (Tubulin gamma chain OS=Ashbya gossypii GN=TUB4 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.940e-12
Identity = 36/108 (33.33%), Postives = 59/108 (54.63%), Query Frame = 3
Query:   12 EILHIQGGQCGNQIGSKFWEVICDEHGVDPTGK-YRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQS--GAGNNWAKGH 326
            EI+ IQ GQCGNQ+G +FW  +  EHG+   G+    +    ++ +  NV++ +    R+ PRA+L DLEP  +  +++  +   F   N    +   GAGN W+ G+
Sbjct:    4 EIISIQVGQCGNQVGKQFWGQLAREHGIGVDGQSLHPEDANVVREDDTNVFFRQNDHNRFTPRALLYDLEPSAIGDVQN-CFPGFFNERNVWISKEELGAGNTWSIGY 110          
The following BLAST results are available for this feature:
BLAST of CF503857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 402
Match NameE-valueIdentityDescription
TBG2_MAIZE2.429e-1738.74Tubulin gamma-2 chain OS=Zea mays GN=TUBG2 PE=2 SV... [more]
TBG1_MAIZE2.429e-1738.74Tubulin gamma-1 chain OS=Zea mays GN=TUBG1 PE=2 SV... [more]
TBG_CANGA4.581e-1637.61Tubulin gamma chain OS=Candida glabrata GN=TUB4 PE... [more]
TBA_PICAB7.814e-1639.08Tubulin alpha chain (Fragment) OS=Picea abies GN=T... [more]
TBA4_DROME2.273e-1533.33Tubulin alpha-4 chain OS=Drosophila melanogaster G... [more]
TBG_CAEEL6.615e-1536.45Tubulin gamma chain OS=Caenorhabditis elegans GN=t... [more]
TBG_ENCCU1.474e-1437.61Tubulin gamma chain OS=Encephalitozoon cuniculi GN... [more]
TBA_ENCHE1.247e-1337.35Tubulin alpha chain (Fragment) OS=Encephalitozoon ... [more]
TBB_HALDI4.013e-1293.55Tubulin beta chain (Fragment) OS=Haliotis discus P... [more]
TBG_ASHGO8.940e-1233.33Tubulin gamma chain OS=Ashbya gossypii GN=TUB4 PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-344 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503857 ID=CF503857; Name=CF503857; organism=Citrus sinensis; type=EST; length=328bp
GATAAATGAGAGAGATCTTGCACATTCAAGGAGGCCAATGCGGCAACCAA
ATCGGCTCCAAATTCTGGGAAGTCATTTGCGACGAGCATGGCGTGGACCC
CACGGGGAAGTATAGAGGTGACGGCGTTGAGGATCTTCAACTGGAGCGAA
TCAATGTCTATTACAACGAAGCTTCCGGTGGAAGGTACGTGCCTCGAGCT
GTTCTCATGGATCTTGAACCCGGTACCATGGATAGTATCAGATCCGGCCC
GTACGGCCAGATCTTTCGACCTGATAACTTCGTTTTTGGACAATCCGGTG
CGGGCAATAACTGGGCCAAAGGTCATTA
back to top