CF503857

Overview
NameCF503857
Unique NameCF503857
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length328
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11134 contig Csv1_Contig11134:919..1246. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB2_CHICK (Tubulin beta-2 chain OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 3.358e-51
Identity = 90/107 (84.11%), Postives = 99/107 (92.52%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DPTG Y GD   DLQLERINVYYNEA+G +YVPRA+L+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDS--DLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB2B_RAT (Tubulin beta-2B chain OS=Rattus norvegicus GN=Tubb2b PE=1 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 3.358e-51
Identity = 90/107 (84.11%), Postives = 99/107 (92.52%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DPTG Y GD   DLQLERINVYYNEA+G +YVPRA+L+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDS--DLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB2B_MOUSE (Tubulin beta-2B chain OS=Mus musculus GN=Tubb2b PE=1 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 3.358e-51
Identity = 90/107 (84.11%), Postives = 99/107 (92.52%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DPTG Y GD   DLQLERINVYYNEA+G +YVPRA+L+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDS--DLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB2B_HUMAN (Tubulin beta-2B chain OS=Homo sapiens GN=TUBB2B PE=1 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 3.358e-51
Identity = 90/107 (84.11%), Postives = 99/107 (92.52%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DPTG Y GD   DLQLERINVYYNEA+G +YVPRA+L+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDS--DLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB2B_BOVIN (Tubulin beta-2B chain OS=Bos taurus GN=TUBB2B PE=1 SV=2)

HSP 1 Score: 199.904 bits (507), Expect = 3.358e-51
Identity = 90/107 (84.11%), Postives = 99/107 (92.52%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DPTG Y GD   DLQLERINVYYNEA+G +YVPRA+L+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDS--DLQLERINVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB2A_RAT (Tubulin beta-2A chain OS=Rattus norvegicus GN=Tubb2a PE=1 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 3.358e-51
Identity = 90/107 (84.11%), Postives = 99/107 (92.52%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DPTG Y GD   DLQLERINVYYNEA+G +YVPRA+L+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDS--DLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB2A_MOUSE (Tubulin beta-2A chain OS=Mus musculus GN=Tubb2a PE=1 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 3.358e-51
Identity = 90/107 (84.11%), Postives = 99/107 (92.52%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DPTG Y GD   DLQLERINVYYNEA+G +YVPRA+L+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDS--DLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB2A_MACFA (Tubulin beta-2A chain OS=Macaca fascicularis GN=TUBB2A PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 3.358e-51
Identity = 90/107 (84.11%), Postives = 99/107 (92.52%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DPTG Y GD   DLQLERINVYYNEA+G +YVPRA+L+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDS--DLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB2A_HUMAN (Tubulin beta-2A chain OS=Homo sapiens GN=TUBB2A PE=1 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 3.358e-51
Identity = 90/107 (84.11%), Postives = 99/107 (92.52%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQ GQCGNQIG+KFWEVI DEHG+DPTG Y GD   DLQLERINVYYNEA+G +YVPRA+L+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDS--DLQLERINVYYNEAAGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGH 105
[Close]
BLAST of CF503857 vs. ExPASy Swiss-Prot
Match: TBB1_GLOMM (Tubulin beta-1 chain OS=Glossina morsitans morsitans PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 3.358e-51
Identity = 91/107 (85.05%), Postives = 99/107 (92.52%), Query Frame = 3 
Query:    6 MREILHIQGGQCGNQIGSKFWEVICDEHGVDPTGKYRGDGVEDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSIRSGPYGQIFRPDNFVFGQSGAGNNWAKGH 326
            MREI+HIQ GQCGNQIG+KFWE+I DEHG+D TG Y GD   DLQLERINVYYNEASGG+YVPRAVL+DLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGH
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEIISDEHGIDATGAYHGDS--DLQLERINVYYNEASGGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGH 105
The following BLAST results are available for this feature:
BLAST of CF503857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 402
Match NameE-valueIdentityDescription
TBB2_CHICK3.358e-5184.11Tubulin beta-2 chain OS=Gallus gallus PE=2 SV=1[more]
TBB2B_RAT3.358e-5184.11Tubulin beta-2B chain OS=Rattus norvegicus GN=Tubb... [more]
TBB2B_MOUSE3.358e-5184.11Tubulin beta-2B chain OS=Mus musculus GN=Tubb2b PE... [more]
TBB2B_HUMAN3.358e-5184.11Tubulin beta-2B chain OS=Homo sapiens GN=TUBB2B PE... [more]
TBB2B_BOVIN3.358e-5184.11Tubulin beta-2B chain OS=Bos taurus GN=TUBB2B PE=1... [more]
TBB2A_RAT3.358e-5184.11Tubulin beta-2A chain OS=Rattus norvegicus GN=Tubb... [more]
TBB2A_MOUSE3.358e-5184.11Tubulin beta-2A chain OS=Mus musculus GN=Tubb2a PE... [more]
TBB2A_MACFA3.358e-5184.11Tubulin beta-2A chain OS=Macaca fascicularis GN=TU... [more]
TBB2A_HUMAN3.358e-5184.11Tubulin beta-2A chain OS=Homo sapiens GN=TUBB2A PE... [more]
TBB1_GLOMM3.358e-5185.05Tubulin beta-1 chain OS=Glossina morsitans morsita... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-344 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503857 ID=CF503857; Name=CF503857; organism=Citrus sinensis; type=EST; length=328bp
GATAAATGAGAGAGATCTTGCACATTCAAGGAGGCCAATGCGGCAACCAA
ATCGGCTCCAAATTCTGGGAAGTCATTTGCGACGAGCATGGCGTGGACCC
CACGGGGAAGTATAGAGGTGACGGCGTTGAGGATCTTCAACTGGAGCGAA
TCAATGTCTATTACAACGAAGCTTCCGGTGGAAGGTACGTGCCTCGAGCT
GTTCTCATGGATCTTGAACCCGGTACCATGGATAGTATCAGATCCGGCCC
GTACGGCCAGATCTTTCGACCTGATAACTTCGTTTTTGGACAATCCGGTG
CGGGCAATAACTGGGCCAAAGGTCATTA
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