CF503860
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: CSHA_BACAH (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus thuringiensis (strain Al Hakam) GN=cshA PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 4.113e-17 Identity = 47/108 (43.52%), Postives = 69/108 (63.89%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 326 R+ D I RKTLR + ++ +VLDE+DEML+ GF + I + +P Q +L SAT+P I + +FMT+P I VK E+T+ I+QF++ V+ E+ KFD L L D Sbjct: 130 RILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQ-EKKKFDVLTRLLD 236
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DBP5_NEOFI (ATP-dependent RNA helicase dbp5 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dbp5 PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 9.163e-17 Identity = 49/110 (44.55%), Postives = 67/110 (60.91%), Query Frame = 3 Query: 6 VCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 V DMIKR+T +K+LVLDE+D ML + G DQ V LP D+QVVL SAT P + + +KF + +I ++ +ELT+EGIKQ ++ E K+ TL LY L Sbjct: 210 VGDMIKRRTFIPNKLKVLVLDEADNMLDQQGLGDQCIRVKALLPRDIQVVLFSATFPEHVHQYASKFAPNANEITLQHEELTVEGIKQLYLDCADGEDKYKTLVQLYGLL 319
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DBP5_ASPFU (ATP-dependent RNA helicase dbp5 OS=Aspergillus fumigatus GN=dbp5 PE=3 SV=2) HSP 1 Score: 85.1149 bits (209), Expect = 1.197e-16 Identity = 49/110 (44.55%), Postives = 67/110 (60.91%), Query Frame = 3 Query: 6 VCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 V DMIKR+T +K+LVLDE+D ML + G DQ V LP D+QVVL SAT P + + +KF + +I ++ +ELT+EGIKQ ++ E K+ TL LY L Sbjct: 210 VGDMIKRRTFIPNKLKVLVLDEADNMLDQQGLGDQCIRVKALLPRDIQVVLFSATFPEHVHQYASKFAPNANEITLQHEELTVEGIKQLYLDCADGEDKYRTLVQLYGLL 319
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DBP5_ASPCL (ATP-dependent RNA helicase dbp5 OS=Aspergillus clavatus GN=dbp5 PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 1.197e-16 Identity = 48/110 (43.64%), Postives = 66/110 (60.00%), Query Frame = 3 Query: 6 VCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 V DMIKR+ + +K+LVLDE+D ML + G DQ V LP D+QVVL SAT P + KF + ++ ++ +ELT+EGIKQ ++ EE K+ TL LY L Sbjct: 210 VMDMIKRRIMVPNKLKVLVLDEADNMLDQQGLGDQCIRVKALLPRDIQVVLFSATFPDHVHAYAAKFAPNANELTLQHEELTVEGIKQLYLDCSDEEDKYKTLVQLYGLL 319
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DBP5_ASPOR (ATP-dependent RNA helicase dbp5 OS=Aspergillus oryzae GN=dbp5 PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 1.563e-16 Identity = 46/110 (41.82%), Postives = 67/110 (60.91%), Query Frame = 3 Query: 6 VCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 V DMI+++ + +K+LVLDE+D ML + G DQ V LP D+QVVL SAT P + + +KF ++ ++ +ELT+EGIKQ ++ EE K+ TL LY L Sbjct: 211 VMDMIRKRVMVANKLKVLVLDEADNMLDQQGLGDQCIRVKALLPKDIQVVLFSATFPTHVHQYASKFAPQANELTLQHEELTVEGIKQLYLDCSDEEDKYKTLVQLYGLL 320
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DBP5_DEBHA (ATP-dependent RNA helicase DBP5 OS=Debaryomyces hansenii GN=DBP5 PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 2.041e-16 Identity = 45/108 (41.67%), Postives = 67/108 (62.04%), Query Frame = 3 Query: 12 DMIKRKTLRTRAIKLLVLDESDEML-SRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 D+I+RK + T +K+ VLDE+D ML S+G DQ V R LP Q+VL SAT P E+ + KF+ + + +K++EL +EGIKQ ++ + KF+ L +LY L Sbjct: 232 DLIRRKLINTSKVKVFVLDEADNMLESQGLGDQCVRVKRTLPKATQLVLFSATFPDEVRKYAEKFVPNANSLELKQEELNVEGIKQLYMDCDSANHKFEVLSELYGLL 339
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DBP5_CANAL (ATP-dependent RNA helicase DBP5 OS=Candida albicans GN=DBP5 PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 2.666e-16 Identity = 43/108 (39.81%), Postives = 68/108 (62.96%), Query Frame = 3 Query: 12 DMIKRKTLRTRAIKLLVLDESDEML-SRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 D+I+R+ L +K+ VLDE+D ML ++G DQ V + LP +Q+VL SAT P E+ E + + D + +K++EL ++GIKQ ++ E+ KF+ LC+LY L Sbjct: 279 DLIRRRQLNLSKMKVFVLDEADNMLEAQGLGDQAIRVKKALPRGVQLVLFSATFPTEVREYAERLVPDANSLELKQEELNVDGIKQLYMDCRSEQHKFEVLCELYGLL 386
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DBP5_AJECN (ATP-dependent RNA helicase DBP5 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=DBP5 PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 2.666e-16 Identity = 44/110 (40.00%), Postives = 67/110 (60.91%), Query Frame = 3 Query: 6 VCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 V D+I+++ + +K++VLDE+D ML + G DQ V LP ++QVVL SAT P ++ KF + +I +K +ELT+EGIKQ ++ + +E KFD L Y L Sbjct: 220 VMDLIRKRLFNPQHLKVIVLDEADNMLDQQGLGDQCIRVKGLLPKNIQVVLFSATFPDHVVRYANKFAPNANQITLKHEELTVEGIKQLYLDCDSDEHKFDILVKFYGLL 329
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: EXP9_STRR6 (Probable ATP-dependent RNA helicase exp9 OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=exp9 PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 4.548e-16 Identity = 43/108 (39.81%), Postives = 68/108 (62.96%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 326 R+ D+IKRK L+ + I+ L+LDE+DEML+ GF + I + +P + Q +L SAT+P I + +FM P + + ELT E + Q+++ V+ +E KFDT+ L D Sbjct: 129 RLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQE-KFDTMTRLMD 235
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: EXP9_STRPN (Probable ATP-dependent RNA helicase exp9 OS=Streptococcus pneumoniae GN=exp9 PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 4.548e-16 Identity = 43/108 (39.81%), Postives = 68/108 (62.96%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 326 R+ D+IKRK L+ + I+ L+LDE+DEML+ GF + I + +P + Q +L SAT+P I + +FM P + + ELT E + Q+++ V+ +E KFDT+ L D Sbjct: 129 RLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQE-KFDTMTRLMD 235 The following BLAST results are available for this feature:
BLAST of CF503860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 238
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF503860 ID=CF503860; Name=CF503860; organism=Citrus sinensis; type=EST; length=333bpback to top |