CF503860

Overview
NameCF503860
Unique NameCF503860
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length333
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: CSHA_BACAH (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus thuringiensis (strain Al Hakam) GN=cshA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.113e-17
Identity = 47/108 (43.52%), Postives = 69/108 (63.89%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 326
            R+ D I RKTLR + ++ +VLDE+DEML+ GF + I  +   +P   Q +L SAT+P  I  +  +FMT+P  I VK  E+T+  I+QF++ V+ E+ KFD L  L D
Sbjct:  130 RILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAKEVTMPNIQQFYLEVQ-EKKKFDVLTRLLD 236          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DBP5_NEOFI (ATP-dependent RNA helicase dbp5 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dbp5 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.163e-17
Identity = 49/110 (44.55%), Postives = 67/110 (60.91%), Query Frame = 3
Query:    6 VCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            V DMIKR+T     +K+LVLDE+D ML + G  DQ   V   LP D+QVVL SAT P  + +  +KF  +  +I ++ +ELT+EGIKQ ++     E K+ TL  LY  L
Sbjct:  210 VGDMIKRRTFIPNKLKVLVLDEADNMLDQQGLGDQCIRVKALLPRDIQVVLFSATFPEHVHQYASKFAPNANEITLQHEELTVEGIKQLYLDCADGEDKYKTLVQLYGLL 319          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DBP5_ASPFU (ATP-dependent RNA helicase dbp5 OS=Aspergillus fumigatus GN=dbp5 PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.197e-16
Identity = 49/110 (44.55%), Postives = 67/110 (60.91%), Query Frame = 3
Query:    6 VCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            V DMIKR+T     +K+LVLDE+D ML + G  DQ   V   LP D+QVVL SAT P  + +  +KF  +  +I ++ +ELT+EGIKQ ++     E K+ TL  LY  L
Sbjct:  210 VGDMIKRRTFIPNKLKVLVLDEADNMLDQQGLGDQCIRVKALLPRDIQVVLFSATFPEHVHQYASKFAPNANEITLQHEELTVEGIKQLYLDCADGEDKYRTLVQLYGLL 319          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DBP5_ASPCL (ATP-dependent RNA helicase dbp5 OS=Aspergillus clavatus GN=dbp5 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.197e-16
Identity = 48/110 (43.64%), Postives = 66/110 (60.00%), Query Frame = 3
Query:    6 VCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            V DMIKR+ +    +K+LVLDE+D ML + G  DQ   V   LP D+QVVL SAT P  +     KF  +  ++ ++ +ELT+EGIKQ ++    EE K+ TL  LY  L
Sbjct:  210 VMDMIKRRIMVPNKLKVLVLDEADNMLDQQGLGDQCIRVKALLPRDIQVVLFSATFPDHVHAYAAKFAPNANELTLQHEELTVEGIKQLYLDCSDEEDKYKTLVQLYGLL 319          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DBP5_ASPOR (ATP-dependent RNA helicase dbp5 OS=Aspergillus oryzae GN=dbp5 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.563e-16
Identity = 46/110 (41.82%), Postives = 67/110 (60.91%), Query Frame = 3
Query:    6 VCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            V DMI+++ +    +K+LVLDE+D ML + G  DQ   V   LP D+QVVL SAT P  + +  +KF     ++ ++ +ELT+EGIKQ ++    EE K+ TL  LY  L
Sbjct:  211 VMDMIRKRVMVANKLKVLVLDEADNMLDQQGLGDQCIRVKALLPKDIQVVLFSATFPTHVHQYASKFAPQANELTLQHEELTVEGIKQLYLDCSDEEDKYKTLVQLYGLL 320          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DBP5_DEBHA (ATP-dependent RNA helicase DBP5 OS=Debaryomyces hansenii GN=DBP5 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.041e-16
Identity = 45/108 (41.67%), Postives = 67/108 (62.04%), Query Frame = 3
Query:   12 DMIKRKTLRTRAIKLLVLDESDEML-SRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            D+I+RK + T  +K+ VLDE+D ML S+G  DQ   V R LP   Q+VL SAT P E+ +   KF+ +   + +K++EL +EGIKQ ++  +    KF+ L +LY  L
Sbjct:  232 DLIRRKLINTSKVKVFVLDEADNMLESQGLGDQCVRVKRTLPKATQLVLFSATFPDEVRKYAEKFVPNANSLELKQEELNVEGIKQLYMDCDSANHKFEVLSELYGLL 339          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DBP5_CANAL (ATP-dependent RNA helicase DBP5 OS=Candida albicans GN=DBP5 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.666e-16
Identity = 43/108 (39.81%), Postives = 68/108 (62.96%), Query Frame = 3
Query:   12 DMIKRKTLRTRAIKLLVLDESDEML-SRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            D+I+R+ L    +K+ VLDE+D ML ++G  DQ   V + LP  +Q+VL SAT P E+ E   + + D   + +K++EL ++GIKQ ++    E+ KF+ LC+LY  L
Sbjct:  279 DLIRRRQLNLSKMKVFVLDEADNMLEAQGLGDQAIRVKKALPRGVQLVLFSATFPTEVREYAERLVPDANSLELKQEELNVDGIKQLYMDCRSEQHKFEVLCELYGLL 386          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DBP5_AJECN (ATP-dependent RNA helicase DBP5 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=DBP5 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.666e-16
Identity = 44/110 (40.00%), Postives = 67/110 (60.91%), Query Frame = 3
Query:    6 VCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            V D+I+++    + +K++VLDE+D ML + G  DQ   V   LP ++QVVL SAT P  ++    KF  +  +I +K +ELT+EGIKQ ++  + +E KFD L   Y  L
Sbjct:  220 VMDLIRKRLFNPQHLKVIVLDEADNMLDQQGLGDQCIRVKGLLPKNIQVVLFSATFPDHVVRYANKFAPNANQITLKHEELTVEGIKQLYLDCDSDEHKFDILVKFYGLL 329          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: EXP9_STRR6 (Probable ATP-dependent RNA helicase exp9 OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=exp9 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.548e-16
Identity = 43/108 (39.81%), Postives = 68/108 (62.96%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 326
            R+ D+IKRK L+ + I+ L+LDE+DEML+ GF + I  +   +P + Q +L SAT+P  I  +  +FM  P  + +   ELT E + Q+++ V+ +E KFDT+  L D
Sbjct:  129 RLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQE-KFDTMTRLMD 235          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: EXP9_STRPN (Probable ATP-dependent RNA helicase exp9 OS=Streptococcus pneumoniae GN=exp9 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.548e-16
Identity = 43/108 (39.81%), Postives = 68/108 (62.96%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 326
            R+ D+IKRK L+ + I+ L+LDE+DEML+ GF + I  +   +P + Q +L SAT+P  I  +  +FM  P  + +   ELT E + Q+++ V+ +E KFDT+  L D
Sbjct:  129 RLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQE-KFDTMTRLMD 235          
The following BLAST results are available for this feature:
BLAST of CF503860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
CSHA_BACAH4.113e-1743.52DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
DBP5_NEOFI9.163e-1744.55ATP-dependent RNA helicase dbp5 OS=Neosartorya fis... [more]
DBP5_ASPFU1.197e-1644.55ATP-dependent RNA helicase dbp5 OS=Aspergillus fum... [more]
DBP5_ASPCL1.197e-1643.64ATP-dependent RNA helicase dbp5 OS=Aspergillus cla... [more]
DBP5_ASPOR1.563e-1641.82ATP-dependent RNA helicase dbp5 OS=Aspergillus ory... [more]
DBP5_DEBHA2.041e-1641.67ATP-dependent RNA helicase DBP5 OS=Debaryomyces ha... [more]
DBP5_CANAL2.666e-1639.81ATP-dependent RNA helicase DBP5 OS=Candida albican... [more]
DBP5_AJECN2.666e-1640.00ATP-dependent RNA helicase DBP5 OS=Ajellomyces cap... [more]
EXP9_STRR64.548e-1639.81Probable ATP-dependent RNA helicase exp9 OS=Strept... [more]
EXP9_STRPN4.548e-1639.81Probable ATP-dependent RNA helicase exp9 OS=Strept... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-347 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503860 ID=CF503860; Name=CF503860; organism=Citrus sinensis; type=EST; length=333bp
GTAGAGTCTGTGATATGATTAAGAGGAAAACTTTGCGTACTAGAGCTATT
AAATTATTGGTGCTTGATGAGTCTGATGAGATGCTGAGCAGAGGGTTCAA
GGATCAAATTTATGATGTGTACCGTTATCTTCCACCGGATCTTCAGGTTG
TTTTGATATCTGCCACCCTTCCTCACGAAATATTGGAGATGACGACCAAA
TTCATGACAGATCCTGTAAAGATTCTTGTGAAGCGTGATGAGTTGACTTT
GGAGGGAATCAAGCAATTTTTTGTTGCAGTGGAAAGAGAGGAGTGGAAGT
TTGATACACTCTGTGATCTTTATGATACCCTTA
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