CF503860
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DBP5_CHAGB (ATP-dependent RNA helicase DBP5 OS=Chaetomium globosum GN=DBP5 PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 1.911e-14 Identity = 39/107 (36.45%), Postives = 64/107 (59.81%), Query Frame = 3 Query: 6 VCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 323 V D+I+R+ +K++V+DE+D ML + G DQ V LP D+Q +L SAT P +++ K+ T+ +I ++ +LT++GI Q ++ E K+D LC LY Sbjct: 201 VMDLIRRRQFDVSQLKIMVIDEADNMLDQQGMGDQCVRVKGMLPKDIQTLLFSATFPEKVMIFARKYATNAHEIKLRHTDLTVKGISQMYMDCPDESKKYDILCKLY 307
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DBP5_ASHGO (ATP-dependent RNA helicase DBP5 OS=Ashbya gossypii GN=DBP5 PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 2.495e-14 Identity = 41/110 (37.27%), Postives = 63/110 (57.27%), Query Frame = 3 Query: 6 VCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 V D+++RK ++ +K VLDE+D ML + G DQ V ++LP D Q+VL SAT + E + + + + ++R+E+ + IKQ F+ E KF LCDLY L Sbjct: 205 VLDLMRRKMIQLGKVKTFVLDEADNMLDKQGLGDQCIRVKKFLPKDTQLVLFSATFDDSVREYARRVVPNANSLELQRNEVNVSAIKQLFMDCNDERHKFTVLCDLYGLL 314
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DDX25_MOUSE (ATP-dependent RNA helicase DDX25 OS=Mus musculus GN=Ddx25 PE=1 SV=2) HSP 1 Score: 77.0258 bits (188), Expect = 3.259e-14 Identity = 37/102 (36.27%), Postives = 63/102 (61.76%), Query Frame = 3 Query: 21 KRKTLRTRAIKLLVLDESDEML-SRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 323 KRK + I++ VLDE+D M+ ++GF DQ + R LP + Q++L SAT + + + + DP I ++++ELTL I+Q++V E + K+ LC++Y Sbjct: 233 KRKLIDLTKIRVFVLDEADVMIDTQGFSDQSIRIQRALPSECQMLLFSATFEDSVWQFAERIIPDPNVIKLRKEELTLNNIRQYYVLCENRKGKYQALCNIY 334
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DBP5_CRYNE (ATP-dependent RNA helicase DBP5 OS=Cryptococcus neoformans GN=DBP5 PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 4.256e-14 Identity = 38/110 (34.55%), Postives = 72/110 (65.45%), Query Frame = 3 Query: 12 DMIKR--KTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 DM+ R + L R I++LVLDE+DE++++ G +Q + + + LPP++Q VL SAT ++ E +F + KI ++++++T++ I+Q ++ + E+ K++ L LYD L Sbjct: 277 DMLMRGSRILDPRMIRVLVLDEADELIAQQGLGEQTFRIKQLLPPNVQNVLFSATFNDDVQEFADRFAPEANKIFLRKEDITVDAIRQLYLECDSEDQKYEALSALYDCL 386
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DDX25_RAT (ATP-dependent RNA helicase DDX25 OS=Rattus norvegicus GN=Ddx25 PE=1 SV=2) HSP 1 Score: 76.2554 bits (186), Expect = 5.559e-14 Identity = 37/102 (36.27%), Postives = 63/102 (61.76%), Query Frame = 3 Query: 21 KRKTLRTRAIKLLVLDESDEML-SRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 323 KRK + I++ VLDE+D M+ ++GF DQ + R LP + Q++L SAT + + + + DP I ++++ELTL I+Q++V E + K+ LC++Y Sbjct: 232 KRKLIDLTKIRVFVLDEADVMIDTQGFSDQSIRIQRALPSECQMLLFSATFEDSVWQFAERIIPDPNVIKLRKEELTLNNIRQYYVLCENRKDKYQALCNIY 333
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DBP5_KLULA (ATP-dependent RNA helicase DBP5 OS=Kluyveromyces lactis GN=DBP5 PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 1.238e-13 Identity = 41/110 (37.27%), Postives = 64/110 (58.18%), Query Frame = 3 Query: 6 VCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 V D+I+RK L +IK+ VLDE+D ML + G DQ V ++LP Q+VL SAT + + K + V + ++++E+ + IKQ F+ + EE K+ L +LY L Sbjct: 206 VLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLL 315
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DHH1_CANAL (ATP-dependent RNA helicase DHH1 OS=Candida albicans GN=DHH1 PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.617e-13 Identity = 45/110 (40.91%), Postives = 62/110 (56.36%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 RV D+ RK + L V+DE+D+MLSR FK I + + PP+ Q +L SAT P + K +T P +I + DELTL+GI QF+ VE E+ K L L+ L Sbjct: 158 RVLDLAARKVVDLSECPLFVMDEADKMLSREFKGIIEQILEFFPPNRQALLFSATFPLAVKSFMDKHLTKPYEINL-MDELTLKGISQFYAFVE-EKQKLHCLNTLFSKL 265
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DDX59_MOUSE (Probable ATP-dependent RNA helicase DDX59 OS=Mus musculus GN=Ddx59 PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.617e-13 Identity = 34/94 (36.17%), Postives = 59/94 (62.77%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVE 284 R+ D+IK+ ++ IK++V+DE+D ML GF+ Q+ DV + P D Q +L+SAT+P I ++T + + +PV+I+ L ++Q + VE Sbjct: 332 RLLDIIKQSSVSLSGIKIVVVDEADTMLKMGFQQQVLDVLEHTPGDCQTILVSATIPDSIEQLTDQLLHNPVRIITGDKNLPCASVRQIILWVE 425
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DD19B_HUMAN (ATP-dependent RNA helicase DDX19B OS=Homo sapiens GN=DDX19B PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.617e-13 Identity = 40/105 (38.10%), Postives = 63/105 (60.00%), Query Frame = 3 Query: 21 KRKTLRTRAIKLLVLDESDEMLS-RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 K K + + IK+ VLDE+D M++ +G +DQ + R LP + Q++L SAT + + K + DP I +KR+E TL+ IKQ++V + KF LC+LY + Sbjct: 227 KLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAI 331
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DD19A_MOUSE (ATP-dependent RNA helicase DDX19A OS=Mus musculus GN=Ddx19a PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 1.617e-13 Identity = 40/105 (38.10%), Postives = 63/105 (60.00%), Query Frame = 3 Query: 21 KRKTLRTRAIKLLVLDESDEMLS-RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 K K + + IK+ VLDE+D M++ +G +DQ + R +P + Q++L SAT + + K + DP I +KR+E TL+ IKQ++V E KF LC+LY + Sbjct: 226 KLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRIVPRNCQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNNREEKFQALCNLYGAI 330 The following BLAST results are available for this feature:
BLAST of CF503860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 238
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF503860 ID=CF503860; Name=CF503860; organism=Citrus sinensis; type=EST; length=333bpback to top |