CF503860

Overview
NameCF503860
Unique NameCF503860
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length333
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DBP5_CHAGB (ATP-dependent RNA helicase DBP5 OS=Chaetomium globosum GN=DBP5 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.911e-14
Identity = 39/107 (36.45%), Postives = 64/107 (59.81%), Query Frame = 3
Query:    6 VCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 323
            V D+I+R+      +K++V+DE+D ML + G  DQ   V   LP D+Q +L SAT P +++    K+ T+  +I ++  +LT++GI Q ++    E  K+D LC LY
Sbjct:  201 VMDLIRRRQFDVSQLKIMVIDEADNMLDQQGMGDQCVRVKGMLPKDIQTLLFSATFPEKVMIFARKYATNAHEIKLRHTDLTVKGISQMYMDCPDESKKYDILCKLY 307          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DBP5_ASHGO (ATP-dependent RNA helicase DBP5 OS=Ashbya gossypii GN=DBP5 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.495e-14
Identity = 41/110 (37.27%), Postives = 63/110 (57.27%), Query Frame = 3
Query:    6 VCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            V D+++RK ++   +K  VLDE+D ML + G  DQ   V ++LP D Q+VL SAT    + E   + + +   + ++R+E+ +  IKQ F+    E  KF  LCDLY  L
Sbjct:  205 VLDLMRRKMIQLGKVKTFVLDEADNMLDKQGLGDQCIRVKKFLPKDTQLVLFSATFDDSVREYARRVVPNANSLELQRNEVNVSAIKQLFMDCNDERHKFTVLCDLYGLL 314          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DDX25_MOUSE (ATP-dependent RNA helicase DDX25 OS=Mus musculus GN=Ddx25 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.259e-14
Identity = 37/102 (36.27%), Postives = 63/102 (61.76%), Query Frame = 3
Query:   21 KRKTLRTRAIKLLVLDESDEML-SRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 323
            KRK +    I++ VLDE+D M+ ++GF DQ   + R LP + Q++L SAT    + +   + + DP  I ++++ELTL  I+Q++V  E  + K+  LC++Y
Sbjct:  233 KRKLIDLTKIRVFVLDEADVMIDTQGFSDQSIRIQRALPSECQMLLFSATFEDSVWQFAERIIPDPNVIKLRKEELTLNNIRQYYVLCENRKGKYQALCNIY 334          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DBP5_CRYNE (ATP-dependent RNA helicase DBP5 OS=Cryptococcus neoformans GN=DBP5 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.256e-14
Identity = 38/110 (34.55%), Postives = 72/110 (65.45%), Query Frame = 3
Query:   12 DMIKR--KTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            DM+ R  + L  R I++LVLDE+DE++++ G  +Q + + + LPP++Q VL SAT   ++ E   +F  +  KI ++++++T++ I+Q ++  + E+ K++ L  LYD L
Sbjct:  277 DMLMRGSRILDPRMIRVLVLDEADELIAQQGLGEQTFRIKQLLPPNVQNVLFSATFNDDVQEFADRFAPEANKIFLRKEDITVDAIRQLYLECDSEDQKYEALSALYDCL 386          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DDX25_RAT (ATP-dependent RNA helicase DDX25 OS=Rattus norvegicus GN=Ddx25 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 5.559e-14
Identity = 37/102 (36.27%), Postives = 63/102 (61.76%), Query Frame = 3
Query:   21 KRKTLRTRAIKLLVLDESDEML-SRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 323
            KRK +    I++ VLDE+D M+ ++GF DQ   + R LP + Q++L SAT    + +   + + DP  I ++++ELTL  I+Q++V  E  + K+  LC++Y
Sbjct:  232 KRKLIDLTKIRVFVLDEADVMIDTQGFSDQSIRIQRALPSECQMLLFSATFEDSVWQFAERIIPDPNVIKLRKEELTLNNIRQYYVLCENRKDKYQALCNIY 333          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DBP5_KLULA (ATP-dependent RNA helicase DBP5 OS=Kluyveromyces lactis GN=DBP5 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.238e-13
Identity = 41/110 (37.27%), Postives = 64/110 (58.18%), Query Frame = 3
Query:    6 VCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            V D+I+RK L   +IK+ VLDE+D ML + G  DQ   V ++LP   Q+VL SAT    + +   K +   V + ++++E+ +  IKQ F+  + EE K+  L +LY  L
Sbjct:  206 VLDLIRRKMLNLGSIKVFVLDEADNMLDKQGLGDQCIRVKKFLPKTCQLVLFSATFDDGVRQYAKKIIPTAVSLELQKNEVNVSAIKQLFMDCDNEEHKYTILSELYGLL 315          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DHH1_CANAL (ATP-dependent RNA helicase DHH1 OS=Candida albicans GN=DHH1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.617e-13
Identity = 45/110 (40.91%), Postives = 62/110 (56.36%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV D+  RK +      L V+DE+D+MLSR FK  I  +  + PP+ Q +L SAT P  +     K +T P +I +  DELTL+GI QF+  VE E+ K   L  L+  L
Sbjct:  158 RVLDLAARKVVDLSECPLFVMDEADKMLSREFKGIIEQILEFFPPNRQALLFSATFPLAVKSFMDKHLTKPYEINL-MDELTLKGISQFYAFVE-EKQKLHCLNTLFSKL 265          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DDX59_MOUSE (Probable ATP-dependent RNA helicase DDX59 OS=Mus musculus GN=Ddx59 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.617e-13
Identity = 34/94 (36.17%), Postives = 59/94 (62.77%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVE 284
            R+ D+IK+ ++    IK++V+DE+D ML  GF+ Q+ DV  + P D Q +L+SAT+P  I ++T + + +PV+I+     L    ++Q  + VE
Sbjct:  332 RLLDIIKQSSVSLSGIKIVVVDEADTMLKMGFQQQVLDVLEHTPGDCQTILVSATIPDSIEQLTDQLLHNPVRIITGDKNLPCASVRQIILWVE 425          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DD19B_HUMAN (ATP-dependent RNA helicase DDX19B OS=Homo sapiens GN=DDX19B PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.617e-13
Identity = 40/105 (38.10%), Postives = 63/105 (60.00%), Query Frame = 3
Query:   21 KRKTLRTRAIKLLVLDESDEMLS-RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            K K +  + IK+ VLDE+D M++ +G +DQ   + R LP + Q++L SAT    + +   K + DP  I +KR+E TL+ IKQ++V     + KF  LC+LY  +
Sbjct:  227 KLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAI 331          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DD19A_MOUSE (ATP-dependent RNA helicase DDX19A OS=Mus musculus GN=Ddx19a PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.617e-13
Identity = 40/105 (38.10%), Postives = 63/105 (60.00%), Query Frame = 3
Query:   21 KRKTLRTRAIKLLVLDESDEMLS-RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            K K +  + IK+ VLDE+D M++ +G +DQ   + R +P + Q++L SAT    + +   K + DP  I +KR+E TL+ IKQ++V     E KF  LC+LY  +
Sbjct:  226 KLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRIVPRNCQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNNREEKFQALCNLYGAI 330          
The following BLAST results are available for this feature:
BLAST of CF503860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
DBP5_CHAGB1.911e-1436.45ATP-dependent RNA helicase DBP5 OS=Chaetomium glob... [more]
DBP5_ASHGO2.495e-1437.27ATP-dependent RNA helicase DBP5 OS=Ashbya gossypii... [more]
DDX25_MOUSE3.259e-1436.27ATP-dependent RNA helicase DDX25 OS=Mus musculus G... [more]
DBP5_CRYNE4.256e-1434.55ATP-dependent RNA helicase DBP5 OS=Cryptococcus ne... [more]
DDX25_RAT5.559e-1436.27ATP-dependent RNA helicase DDX25 OS=Rattus norvegi... [more]
DBP5_KLULA1.238e-1337.27ATP-dependent RNA helicase DBP5 OS=Kluyveromyces l... [more]
DHH1_CANAL1.617e-1340.91ATP-dependent RNA helicase DHH1 OS=Candida albican... [more]
DDX59_MOUSE1.617e-1336.17Probable ATP-dependent RNA helicase DDX59 OS=Mus m... [more]
DD19B_HUMAN1.617e-1338.10ATP-dependent RNA helicase DDX19B OS=Homo sapiens ... [more]
DD19A_MOUSE1.617e-1338.10ATP-dependent RNA helicase DDX19A OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-347 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503860 ID=CF503860; Name=CF503860; organism=Citrus sinensis; type=EST; length=333bp
GTAGAGTCTGTGATATGATTAAGAGGAAAACTTTGCGTACTAGAGCTATT
AAATTATTGGTGCTTGATGAGTCTGATGAGATGCTGAGCAGAGGGTTCAA
GGATCAAATTTATGATGTGTACCGTTATCTTCCACCGGATCTTCAGGTTG
TTTTGATATCTGCCACCCTTCCTCACGAAATATTGGAGATGACGACCAAA
TTCATGACAGATCCTGTAAAGATTCTTGTGAAGCGTGATGAGTTGACTTT
GGAGGGAATCAAGCAATTTTTTGTTGCAGTGGAAAGAGAGGAGTGGAAGT
TTGATACACTCTGTGATCTTTATGATACCCTTA
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