CF503860

Overview
NameCF503860
Unique NameCF503860
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length333
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: UAP56_CANFA (Spliceosome RNA helicase BAT1 OS=Canis familiaris GN=BAT1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.203e-12
Identity = 41/112 (36.61%), Postives = 68/112 (60.71%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            R+  + + K+L  + IK  +LDE D+ML +   +  + +++R  P + QV++ SATL  EI  +  KFM DP++I V  + +LTL G++Q++V ++  E K   L DL D L
Sbjct:  175 RILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNE-KNRKLFDLLDVL 285          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: UAP56_BOVIN (Spliceosome RNA helicase BAT1 OS=Bos taurus GN=BAT1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.203e-12
Identity = 41/112 (36.61%), Postives = 68/112 (60.71%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            R+  + + K+L  + IK  +LDE D+ML +   +  + +++R  P + QV++ SATL  EI  +  KFM DP++I V  + +LTL G++Q++V ++  E K   L DL D L
Sbjct:  175 RILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNE-KNRKLFDLLDVL 285          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: SUB2_NEOFI (ATP-dependent RNA helicase sub2 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=sub2 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.203e-12
Identity = 40/112 (35.71%), Postives = 68/112 (60.71%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            R+  +++ K L  R +K  VLDE D+ML +   +  + +++R  P D QV++ SATL  EI  +  KFM +P+++ V  D +LTL G++Q+++ +   E K   L +L D+L
Sbjct:  190 RLNALVREKKLSLRNVKAFVLDECDKMLDQIDMRRDVQEIFRATPADKQVMMFSATLSQEIRPICKKFMRNPLEVYVDDDTKLTLHGLQQYYIKLSESE-KNRKLNELLDSL 300          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DHH1_YEAST (ATP-dependent RNA helicase DHH1 OS=Saccharomyces cerevisiae GN=DHH1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.203e-12
Identity = 43/110 (39.09%), Postives = 60/110 (54.55%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV D+  RK        L ++DE+D+MLSR FK  I  +  +LPP  Q +L SAT P  + E   K +  P +I +  +ELTL+GI Q++  VE E  K   L  L+  L
Sbjct:  174 RVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINL-MEELTLKGITQYYAFVE-ERQKLHCLNTLFSKL 281          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DHH1_YEAS7 (ATP-dependent RNA helicase DHH1 OS=Saccharomyces cerevisiae (strain YJM789) GN=DHH1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.203e-12
Identity = 43/110 (39.09%), Postives = 60/110 (54.55%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV D+  RK        L ++DE+D+MLSR FK  I  +  +LPP  Q +L SAT P  + E   K +  P +I +  +ELTL+GI Q++  VE E  K   L  L+  L
Sbjct:  174 RVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINL-MEELTLKGITQYYAFVE-ERQKLHCLNTLFSKL 281          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DBP5_MAGGR (ATP-dependent RNA helicase DBP5 OS=Magnaporthe grisea GN=DBP5 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.203e-12
Identity = 37/107 (34.58%), Postives = 60/107 (56.07%), Query Frame = 3
Query:    6 VCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 323
            V D+I+R+      +KLLV+DE+D ML + G  +Q   V   LP  +Q +L SAT P  +     KF     ++ +++ ELT++GI Q ++     + K++ LC LY
Sbjct:  225 VMDLIRRRQFDVSQLKLLVVDEADNMLDQQGLGEQCVRVKNMLPKTIQTLLFSATFPDHVKSYAEKFAPQANQMKLRQQELTVKGISQMYMDCPSLKEKYEVLCKLY 331          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: SUB2_COCIM (ATP-dependent RNA helicase SUB2 OS=Coccidioides immitis GN=SUB2 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.796e-12
Identity = 41/112 (36.61%), Postives = 67/112 (59.82%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            R+  +++ K L  R IK  VLDE D+ML +   +  + +++R  P D QV++ SATL  EI  +  KFM +P+++ V  D +LTL G++Q+++ +   E K   L +L D L
Sbjct:  192 RLNALVREKKLSLRNIKAFVLDECDKMLDQIDMRRDVQEIFRSTPADKQVMMFSATLSQEIRPICKKFMRNPLEVYVDDDTKLTLHGLQQYYIKLSEAE-KNRKLNELLDNL 302          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: SUB2_ASPCL (ATP-dependent RNA helicase sub2 OS=Aspergillus clavatus GN=sub2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.875e-12
Identity = 40/112 (35.71%), Postives = 68/112 (60.71%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            R+  +++ K L  R +K  VLDE D+ML +   +  + +++R  P D QV++ SATL  EI  +  KFM +P+++ V  D +LTL G++Q+++ +   E K   L +L D+L
Sbjct:  190 RLNALVRDKKLSLRNVKAFVLDECDKMLDQIDMRRDVQEIFRATPADKQVMMFSATLSQEIRPICKKFMRNPLEVYVDDDTKLTLHGLQQYYIKLSESE-KNRKLNELLDSL 300          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DEAD_MYCTU (Cold-shock DEAD box protein A homolog OS=Mycobacterium tuberculosis GN=deaD PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.875e-12
Identity = 35/96 (36.46%), Postives = 54/96 (56.25%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVERE 290
            R+ D ++R TL    +  LVLDE+DEML+ GF D +  +    P   QV L SAT+P  I +++ K++ DP ++  K      E I Q ++ V R+
Sbjct:  142 RMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVARK 237          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: Y2316_STAA8 (Probable DEAD-box ATP-dependent RNA helicase SAOUHSC_02316 OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_02316 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.159e-11
Identity = 40/109 (36.70%), Postives = 62/109 (56.88%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP-DLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 326
            RV D + R+TL+T  I  L+LDE+DEM++ GF D +  +   +P    Q +L SAT+P  I  +  +FM  P  I    +E++   I++F+  V+  E KFDT  +  D
Sbjct:  129 RVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELE-KFDTFTNFLD 236          
The following BLAST results are available for this feature:
BLAST of CF503860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
UAP56_CANFA5.203e-1236.61Spliceosome RNA helicase BAT1 OS=Canis familiaris ... [more]
UAP56_BOVIN5.203e-1236.61Spliceosome RNA helicase BAT1 OS=Bos taurus GN=BAT... [more]
SUB2_NEOFI5.203e-1235.71ATP-dependent RNA helicase sub2 OS=Neosartorya fis... [more]
DHH1_YEAST5.203e-1239.09ATP-dependent RNA helicase DHH1 OS=Saccharomyces c... [more]
DHH1_YEAS75.203e-1239.09ATP-dependent RNA helicase DHH1 OS=Saccharomyces c... [more]
DBP5_MAGGR5.203e-1234.58ATP-dependent RNA helicase DBP5 OS=Magnaporthe gri... [more]
SUB2_COCIM6.796e-1236.61ATP-dependent RNA helicase SUB2 OS=Coccidioides im... [more]
SUB2_ASPCL8.875e-1235.71ATP-dependent RNA helicase sub2 OS=Aspergillus cla... [more]
DEAD_MYCTU8.875e-1236.46Cold-shock DEAD box protein A homolog OS=Mycobacte... [more]
Y2316_STAA81.159e-1136.70Probable DEAD-box ATP-dependent RNA helicase SAOUH... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-347 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503860 ID=CF503860; Name=CF503860; organism=Citrus sinensis; type=EST; length=333bp
GTAGAGTCTGTGATATGATTAAGAGGAAAACTTTGCGTACTAGAGCTATT
AAATTATTGGTGCTTGATGAGTCTGATGAGATGCTGAGCAGAGGGTTCAA
GGATCAAATTTATGATGTGTACCGTTATCTTCCACCGGATCTTCAGGTTG
TTTTGATATCTGCCACCCTTCCTCACGAAATATTGGAGATGACGACCAAA
TTCATGACAGATCCTGTAAAGATTCTTGTGAAGCGTGATGAGTTGACTTT
GGAGGGAATCAAGCAATTTTTTGTTGCAGTGGAAAGAGAGGAGTGGAAGT
TTGATACACTCTGTGATCTTTATGATACCCTTA
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