CF503860
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: UAP56_CANFA (Spliceosome RNA helicase BAT1 OS=Canis familiaris GN=BAT1 PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 5.203e-12 Identity = 41/112 (36.61%), Postives = 68/112 (60.71%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 R+ + + K+L + IK +LDE D+ML + + + +++R P + QV++ SATL EI + KFM DP++I V + +LTL G++Q++V ++ E K L DL D L Sbjct: 175 RILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNE-KNRKLFDLLDVL 285
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: UAP56_BOVIN (Spliceosome RNA helicase BAT1 OS=Bos taurus GN=BAT1 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 5.203e-12 Identity = 41/112 (36.61%), Postives = 68/112 (60.71%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 R+ + + K+L + IK +LDE D+ML + + + +++R P + QV++ SATL EI + KFM DP++I V + +LTL G++Q++V ++ E K L DL D L Sbjct: 175 RILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNE-KNRKLFDLLDVL 285
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: SUB2_NEOFI (ATP-dependent RNA helicase sub2 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=sub2 PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 5.203e-12 Identity = 40/112 (35.71%), Postives = 68/112 (60.71%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 R+ +++ K L R +K VLDE D+ML + + + +++R P D QV++ SATL EI + KFM +P+++ V D +LTL G++Q+++ + E K L +L D+L Sbjct: 190 RLNALVREKKLSLRNVKAFVLDECDKMLDQIDMRRDVQEIFRATPADKQVMMFSATLSQEIRPICKKFMRNPLEVYVDDDTKLTLHGLQQYYIKLSESE-KNRKLNELLDSL 300
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DHH1_YEAST (ATP-dependent RNA helicase DHH1 OS=Saccharomyces cerevisiae GN=DHH1 PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 5.203e-12 Identity = 43/110 (39.09%), Postives = 60/110 (54.55%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 RV D+ RK L ++DE+D+MLSR FK I + +LPP Q +L SAT P + E K + P +I + +ELTL+GI Q++ VE E K L L+ L Sbjct: 174 RVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINL-MEELTLKGITQYYAFVE-ERQKLHCLNTLFSKL 281
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DHH1_YEAS7 (ATP-dependent RNA helicase DHH1 OS=Saccharomyces cerevisiae (strain YJM789) GN=DHH1 PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 5.203e-12 Identity = 43/110 (39.09%), Postives = 60/110 (54.55%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 RV D+ RK L ++DE+D+MLSR FK I + +LPP Q +L SAT P + E K + P +I + +ELTL+GI Q++ VE E K L L+ L Sbjct: 174 RVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINL-MEELTLKGITQYYAFVE-ERQKLHCLNTLFSKL 281
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DBP5_MAGGR (ATP-dependent RNA helicase DBP5 OS=Magnaporthe grisea GN=DBP5 PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 5.203e-12 Identity = 37/107 (34.58%), Postives = 60/107 (56.07%), Query Frame = 3 Query: 6 VCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 323 V D+I+R+ +KLLV+DE+D ML + G +Q V LP +Q +L SAT P + KF ++ +++ ELT++GI Q ++ + K++ LC LY Sbjct: 225 VMDLIRRRQFDVSQLKLLVVDEADNMLDQQGLGEQCVRVKNMLPKTIQTLLFSATFPDHVKSYAEKFAPQANQMKLRQQELTVKGISQMYMDCPSLKEKYEVLCKLY 331
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: SUB2_COCIM (ATP-dependent RNA helicase SUB2 OS=Coccidioides immitis GN=SUB2 PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 6.796e-12 Identity = 41/112 (36.61%), Postives = 67/112 (59.82%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 R+ +++ K L R IK VLDE D+ML + + + +++R P D QV++ SATL EI + KFM +P+++ V D +LTL G++Q+++ + E K L +L D L Sbjct: 192 RLNALVREKKLSLRNIKAFVLDECDKMLDQIDMRRDVQEIFRSTPADKQVMMFSATLSQEIRPICKKFMRNPLEVYVDDDTKLTLHGLQQYYIKLSEAE-KNRKLNELLDNL 302
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: SUB2_ASPCL (ATP-dependent RNA helicase sub2 OS=Aspergillus clavatus GN=sub2 PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 8.875e-12 Identity = 40/112 (35.71%), Postives = 68/112 (60.71%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 R+ +++ K L R +K VLDE D+ML + + + +++R P D QV++ SATL EI + KFM +P+++ V D +LTL G++Q+++ + E K L +L D+L Sbjct: 190 RLNALVRDKKLSLRNVKAFVLDECDKMLDQIDMRRDVQEIFRATPADKQVMMFSATLSQEIRPICKKFMRNPLEVYVDDDTKLTLHGLQQYYIKLSESE-KNRKLNELLDSL 300
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DEAD_MYCTU (Cold-shock DEAD box protein A homolog OS=Mycobacterium tuberculosis GN=deaD PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 8.875e-12 Identity = 35/96 (36.46%), Postives = 54/96 (56.25%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVERE 290 R+ D ++R TL + LVLDE+DEML+ GF D + + P QV L SAT+P I +++ K++ DP ++ K E I Q ++ V R+ Sbjct: 142 RMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVARK 237
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: Y2316_STAA8 (Probable DEAD-box ATP-dependent RNA helicase SAOUHSC_02316 OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_02316 PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 1.159e-11 Identity = 40/109 (36.70%), Postives = 62/109 (56.88%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP-DLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 326 RV D + R+TL+T I L+LDE+DEM++ GF D + + +P Q +L SAT+P I + +FM P I +E++ I++F+ V+ E KFDT + D Sbjct: 129 RVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELE-KFDTFTNFLD 236 The following BLAST results are available for this feature:
BLAST of CF503860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 238
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Sequences
The
following sequences are available for this feature:
EST sequence >CF503860 ID=CF503860; Name=CF503860; organism=Citrus sinensis; type=EST; length=333bpback to top |