CF503860

Overview
NameCF503860
Unique NameCF503860
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length333
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: Y2168_STAAR (Probable DEAD-box ATP-dependent RNA helicase SAR2168 OS=Staphylococcus aureus (strain MRSA252) GN=SAR2168 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.159e-11
Identity = 40/109 (36.70%), Postives = 62/109 (56.88%), Query Frame = 3 
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP-DLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 326
            RV D + R+TL+T  I  L+LDE+DEM++ GF D +  +   +P    Q +L SAT+P  I  +  +FM  P  I    +E++   I++F+  V+  E KFDT  +  D
Sbjct:  129 RVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELE-KFDTFTNFLD 236
[Close]
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: Y2081_STAAM (Probable DEAD-box ATP-dependent RNA helicase SAV2081 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV2081 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.159e-11
Identity = 40/109 (36.70%), Postives = 62/109 (56.88%), Query Frame = 3 
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP-DLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 326
            RV D + R+TL+T  I  L+LDE+DEM++ GF D +  +   +P    Q +L SAT+P  I  +  +FM  P  I    +E++   I++F+  V+  E KFDT  +  D
Sbjct:  129 RVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELE-KFDTFTNFLD 236
[Close]
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: Y2072_STAAC (Probable DEAD-box ATP-dependent RNA helicase SACOL2072 OS=Staphylococcus aureus (strain COL) GN=SACOL2072 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.159e-11
Identity = 40/109 (36.70%), Postives = 62/109 (56.88%), Query Frame = 3 
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP-DLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 326
            RV D + R+TL+T  I  L+LDE+DEM++ GF D +  +   +P    Q +L SAT+P  I  +  +FM  P  I    +E++   I++F+  V+  E KFDT  +  D
Sbjct:  129 RVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELE-KFDTFTNFLD 236
[Close]
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: Y2037_STAA3 (Probable DEAD-box ATP-dependent RNA helicase SAUSA300_2037 OS=Staphylococcus aureus (strain USA300) GN=SAUSA300_2037 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.159e-11
Identity = 40/109 (36.70%), Postives = 62/109 (56.88%), Query Frame = 3 
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP-DLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 326
            RV D + R+TL+T  I  L+LDE+DEM++ GF D +  +   +P    Q +L SAT+P  I  +  +FM  P  I    +E++   I++F+  V+  E KFDT  +  D
Sbjct:  129 RVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELE-KFDTFTNFLD 236
[Close]
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: Y2004_STAAW (Probable DEAD-box ATP-dependent RNA helicase MW2004 OS=Staphylococcus aureus (strain MW2) GN=MW2004 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.159e-11
Identity = 40/109 (36.70%), Postives = 62/109 (56.88%), Query Frame = 3 
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP-DLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 326
            RV D + R+TL+T  I  L+LDE+DEM++ GF D +  +   +P    Q +L SAT+P  I  +  +FM  P  I    +E++   I++F+  V+  E KFDT  +  D
Sbjct:  129 RVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELE-KFDTFTNFLD 236
[Close]
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: Y1985_STAAS (Probable DEAD-box ATP-dependent RNA helicase SAS1985 OS=Staphylococcus aureus (strain MSSA476) GN=SAS1985 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.159e-11
Identity = 40/109 (36.70%), Postives = 62/109 (56.88%), Query Frame = 3 
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP-DLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 326
            RV D + R+TL+T  I  L+LDE+DEM++ GF D +  +   +P    Q +L SAT+P  I  +  +FM  P  I    +E++   I++F+  V+  E KFDT  +  D
Sbjct:  129 RVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELE-KFDTFTNFLD 236
[Close]
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: Y1965_STAAB (Probable DEAD-box ATP-dependent RNA helicase SAB1965c OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=SAB1965c PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.159e-11
Identity = 40/109 (36.70%), Postives = 62/109 (56.88%), Query Frame = 3 
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP-DLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 326
            RV D + R+TL+T  I  L+LDE+DEM++ GF D +  +   +P    Q +L SAT+P  I  +  +FM  P  I    +E++   I++F+  V+  E KFDT  +  D
Sbjct:  129 RVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELE-KFDTFTNFLD 236
[Close]
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: Y1885_STAAN (Probable DEAD-box ATP-dependent RNA helicase SA1885 OS=Staphylococcus aureus (strain N315) GN=SA1885 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.159e-11
Identity = 40/109 (36.70%), Postives = 62/109 (56.88%), Query Frame = 3 
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPP-DLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 326
            RV D + R+TL+T  I  L+LDE+DEM++ GF D +  +   +P    Q +L SAT+P  I  +  +FM  P  I    +E++   I++F+  V+  E KFDT  +  D
Sbjct:  129 RVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEEFYTIVKELE-KFDTFTNFLD 236
[Close]
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: SUB2_ASPOR (ATP-dependent RNA helicase sub2 OS=Aspergillus oryzae GN=sub2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.159e-11
Identity = 40/112 (35.71%), Postives = 68/112 (60.71%), Query Frame = 3 
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            R+  +++ K L  R +K  VLDE D+ML +   +  + +++R  P D QV++ SATL  EI  +  KFM +P+++ V  D +LTL G++Q+++ +   E K   L +L D+L
Sbjct:  190 RLNALVRDKKLSLRNVKAFVLDECDKMLDQIDMRRDVQEIFRATPADKQVMMFSATLSQEIRPVCKKFMRNPLEVYVDDDTKLTLHGLQQYYIKLSEAE-KNRKLNELLDSL 300
[Close]
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: SUB2_ASPNC (ATP-dependent RNA helicase sub2 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sub2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.159e-11
Identity = 40/112 (35.71%), Postives = 68/112 (60.71%), Query Frame = 3 
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            R+  +++ K L  R +K  VLDE D+ML +   +  + +++R  P D QV++ SATL  EI  +  KFM +P+++ V  D +LTL G++Q+++ +   E K   L +L D+L
Sbjct:  189 RLNALVRDKKLSLRNVKAFVLDECDKMLDQIDMRRDVQEIFRATPADKQVMMFSATLSQEIRPVCKKFMRNPLEVYVDDDTKLTLHGLQQYYIKLSEAE-KNRKLNELLDSL 299
The following BLAST results are available for this feature:
BLAST of CF503860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
Y2168_STAAR1.159e-1136.70Probable DEAD-box ATP-dependent RNA helicase SAR21... [more]
Y2081_STAAM1.159e-1136.70Probable DEAD-box ATP-dependent RNA helicase SAV20... [more]
Y2072_STAAC1.159e-1136.70Probable DEAD-box ATP-dependent RNA helicase SACOL... [more]
Y2037_STAA31.159e-1136.70Probable DEAD-box ATP-dependent RNA helicase SAUSA... [more]
Y2004_STAAW1.159e-1136.70Probable DEAD-box ATP-dependent RNA helicase MW200... [more]
Y1985_STAAS1.159e-1136.70Probable DEAD-box ATP-dependent RNA helicase SAS19... [more]
Y1965_STAAB1.159e-1136.70Probable DEAD-box ATP-dependent RNA helicase SAB19... [more]
Y1885_STAAN1.159e-1136.70Probable DEAD-box ATP-dependent RNA helicase SA188... [more]
SUB2_ASPOR1.159e-1135.71ATP-dependent RNA helicase sub2 OS=Aspergillus ory... [more]
SUB2_ASPNC1.159e-1135.71ATP-dependent RNA helicase sub2 OS=Aspergillus nig... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-347 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503860 ID=CF503860; Name=CF503860; organism=Citrus sinensis; type=EST; length=333bp
GTAGAGTCTGTGATATGATTAAGAGGAAAACTTTGCGTACTAGAGCTATT
AAATTATTGGTGCTTGATGAGTCTGATGAGATGCTGAGCAGAGGGTTCAA
GGATCAAATTTATGATGTGTACCGTTATCTTCCACCGGATCTTCAGGTTG
TTTTGATATCTGCCACCCTTCCTCACGAAATATTGGAGATGACGACCAAA
TTCATGACAGATCCTGTAAAGATTCTTGTGAAGCGTGATGAGTTGACTTT
GGAGGGAATCAAGCAATTTTTTGTTGCAGTGGAAAGAGAGGAGTGGAAGT
TTGATACACTCTGTGATCTTTATGATACCCTTA
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