CF503860
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: RH8_ARATH (DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis thaliana GN=RH8 PE=2 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 1.977e-11 Identity = 37/110 (33.64%), Postives = 64/110 (58.18%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 R+ D+ K+ + +LV+DE+D++LS+ F+ + + +LP Q+++ SAT P + + +F+T+P ++ DELTL+GI QF+ VE E K L L+ L Sbjct: 259 RILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSATFPVTVKDFKDRFLTNPY-VINLMDELTLKGITQFYAFVE-ERQKIHCLNTLFSKL 366
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: RH20_ORYSJ (DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa subsp. japonica GN=Os01g0197200 PE=3 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 1.977e-11 Identity = 36/110 (32.73%), Postives = 58/110 (52.73%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 R+ DMI+ R + LVLDE+D ML GF+ QI + + PD Q + SAT P E+ ++ F+ DP K+++ +EL V + E K++ L +L + + Sbjct: 224 RLIDMIESHHTNLRRVTYLVLDEADRMLDMGFEPQIKKIVSQIRPDRQTLYWSATWPKEVEQLARNFLFDPYKVIIGSEELKANHAISQHVEILSESQKYNKLVNLLEDI 333
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DHH1_VANPO (ATP-dependent RNA helicase DHH1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DHH1 PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 1.977e-11 Identity = 42/110 (38.18%), Postives = 60/110 (54.55%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 RV D+ RK L ++DE+D+MLSR FK I + +LP + Q +L SAT P + E + P +I + DELTL+GI Q++ VE E+ K L L+ L Sbjct: 162 RVLDLASRKVADLSECNLFIMDEADKMLSRDFKSIIEQILVFLPKNHQSLLFSATFPLSVKEFMVNHLHKPYEINL-MDELTLKGITQYYAFVE-EKQKLHCLNTLFSKL 269
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DHH1_KLULA (ATP-dependent RNA helicase DHH1 OS=Kluyveromyces lactis GN=DHH1 PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 1.977e-11 Identity = 42/110 (38.18%), Postives = 61/110 (55.45%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 RV D+ R+ L ++DE+D+MLSR FK + +LP Q++L SAT P + E K + +P +I + DELTL+GI QF+ VE E+ K L L+ L Sbjct: 164 RVLDLASRRVTDLSECHLFIMDEADKMLSRDFKVLAEQILGFLPERRQLLLFSATFPVTVKEFMVKHLKNPHEINL-MDELTLKGISQFYAFVE-EKQKLHCLNTLFSKL 271
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DEAD_HAEIN (Cold-shock DEAD box protein A homolog OS=Haemophilus influenzae GN=deaD PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 1.977e-11 Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVK 233 R+ D I+R TL ++ +VLDE+DEML GF D + V LP + Q L SAT+P I +T +FM DP ++ +K Sbjct: 134 RILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMPEPIRRITKRFMNDPQEVKIK 210
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DHH1_DEBHA (ATP-dependent RNA helicase DHH1 OS=Debaryomyces hansenii GN=DHH1 PE=3 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 2.582e-11 Identity = 43/110 (39.09%), Postives = 58/110 (52.73%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 RV D+ RK L V+DE+D+MLSR FK I + + P Q +L SAT P + + +T P +I + DELTL GI QF+ VE E+ K L L+ L Sbjct: 158 RVLDLASRKVADLSECPLFVMDEADKMLSREFKGIIEQILAFFPTTRQSLLFSATFPLAVKSFMDQHLTKPYEINL-MDELTLRGISQFYAFVE-EKQKLHCLNTLFSKL 265
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DHH1_CANGA (ATP-dependent RNA helicase DHH1 OS=Candida glabrata GN=DHH1 PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 2.582e-11 Identity = 44/110 (40.00%), Postives = 59/110 (53.64%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 RV D+ RK L V+DE+D+MLSR FK I V +LP Q +L SAT P + E K + P +I + +ELTL+GI Q++ VE E K L L+ L Sbjct: 159 RVLDLASRKVADLSECSLFVMDEADKMLSRDFKTIIEQVLTFLPKAHQSLLFSATFPLTVKEFMVKHLHKPYEINL-MEELTLKGITQYYAFVE-ERQKLHCLNTLFSKL 266
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: SUB2_DEBHA (ATP-dependent RNA helicase SUB2 OS=Debaryomyces hansenii GN=SUB2 PE=3 SV=2) HSP 1 Score: 67.0106 bits (162), Expect = 3.373e-11 Identity = 39/112 (34.82%), Postives = 68/112 (60.71%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 R+ ++ K++R IK V+DE D++L + + D++R P QV++ SATL EI + KFM +P++I V + +LTL G++Q+++ ++ +E K L DL D+L Sbjct: 183 RLHALVTEKSIRLNNIKSFVIDECDKVLEAVDMRRDVQDIFRNTPHQKQVMMFSATLSQEIRPVCKKFMQNPLEIYVDDEAKLTLHGLQQYYIKLDEKE-KNRKLSDLLDSL 293
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: SUB2_AJECN (ATP-dependent RNA helicase SUB2 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=SUB2 PE=3 SV=2) HSP 1 Score: 67.0106 bits (162), Expect = 3.373e-11 Identity = 40/112 (35.71%), Postives = 67/112 (59.82%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 R+ +++ K L R IK VLDE D+ML + + + +++R P D QV++ SATL E+ + KFM +P+++ V D +LTL G+ Q+++ + E K L +L D+L Sbjct: 191 RLNALVRDKKLSLRNIKAFVLDECDKMLDQIDMRRDVQEIFRATPADKQVMMFSATLSQEVRPICKKFMRNPLEVYVDDDTKLTLHGLLQYYIKLGESE-KNRKLNELLDSL 301
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: SUB2_PICGU (ATP-dependent RNA helicase SUB2 OS=Pichia guilliermondii GN=SUB2 PE=3 SV=3) HSP 1 Score: 66.6254 bits (161), Expect = 4.405e-11 Identity = 38/112 (33.93%), Postives = 68/112 (60.71%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 R+ +++ K +R +K V+DE D++L + + D++R P QV++ SATL EI + KFM +P++I V + +LTL G++Q+++ ++ +E K L DL D+L Sbjct: 180 RLHALVEEKAIRLNNVKSFVIDECDKVLEAIDMRRDVQDIFRNTPHQKQVMMFSATLSQEIRPVCKKFMQNPLEIYVDDEAKLTLHGLQQYYLKLDEKE-KNRKLADLLDSL 290 The following BLAST results are available for this feature:
BLAST of CF503860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 238
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Sequences
The
following sequences are available for this feature:
EST sequence >CF503860 ID=CF503860; Name=CF503860; organism=Citrus sinensis; type=EST; length=333bpback to top |