CF503860

Overview
NameCF503860
Unique NameCF503860
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length333
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: RH8_ARATH (DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis thaliana GN=RH8 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.977e-11
Identity = 37/110 (33.64%), Postives = 64/110 (58.18%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            R+ D+ K+     +   +LV+DE+D++LS+ F+  +  +  +LP   Q+++ SAT P  + +   +F+T+P  ++   DELTL+GI QF+  VE E  K   L  L+  L
Sbjct:  259 RILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSATFPVTVKDFKDRFLTNPY-VINLMDELTLKGITQFYAFVE-ERQKIHCLNTLFSKL 366          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: RH20_ORYSJ (DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa subsp. japonica GN=Os01g0197200 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 1.977e-11
Identity = 36/110 (32.73%), Postives = 58/110 (52.73%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            R+ DMI+      R +  LVLDE+D ML  GF+ QI  +   + PD Q +  SAT P E+ ++   F+ DP K+++  +EL         V +  E  K++ L +L + +
Sbjct:  224 RLIDMIESHHTNLRRVTYLVLDEADRMLDMGFEPQIKKIVSQIRPDRQTLYWSATWPKEVEQLARNFLFDPYKVIIGSEELKANHAISQHVEILSESQKYNKLVNLLEDI 333          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DHH1_VANPO (ATP-dependent RNA helicase DHH1 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DHH1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.977e-11
Identity = 42/110 (38.18%), Postives = 60/110 (54.55%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV D+  RK        L ++DE+D+MLSR FK  I  +  +LP + Q +L SAT P  + E     +  P +I +  DELTL+GI Q++  VE E+ K   L  L+  L
Sbjct:  162 RVLDLASRKVADLSECNLFIMDEADKMLSRDFKSIIEQILVFLPKNHQSLLFSATFPLSVKEFMVNHLHKPYEINL-MDELTLKGITQYYAFVE-EKQKLHCLNTLFSKL 269          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DHH1_KLULA (ATP-dependent RNA helicase DHH1 OS=Kluyveromyces lactis GN=DHH1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.977e-11
Identity = 42/110 (38.18%), Postives = 61/110 (55.45%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV D+  R+        L ++DE+D+MLSR FK     +  +LP   Q++L SAT P  + E   K + +P +I +  DELTL+GI QF+  VE E+ K   L  L+  L
Sbjct:  164 RVLDLASRRVTDLSECHLFIMDEADKMLSRDFKVLAEQILGFLPERRQLLLFSATFPVTVKEFMVKHLKNPHEINL-MDELTLKGISQFYAFVE-EKQKLHCLNTLFSKL 271          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DEAD_HAEIN (Cold-shock DEAD box protein A homolog OS=Haemophilus influenzae GN=deaD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.977e-11
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVK 233
            R+ D I+R TL    ++ +VLDE+DEML  GF D +  V   LP + Q  L SAT+P  I  +T +FM DP ++ +K
Sbjct:  134 RILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMPEPIRRITKRFMNDPQEVKIK 210          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DHH1_DEBHA (ATP-dependent RNA helicase DHH1 OS=Debaryomyces hansenii GN=DHH1 PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.582e-11
Identity = 43/110 (39.09%), Postives = 58/110 (52.73%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV D+  RK        L V+DE+D+MLSR FK  I  +  + P   Q +L SAT P  +     + +T P +I +  DELTL GI QF+  VE E+ K   L  L+  L
Sbjct:  158 RVLDLASRKVADLSECPLFVMDEADKMLSREFKGIIEQILAFFPTTRQSLLFSATFPLAVKSFMDQHLTKPYEINL-MDELTLRGISQFYAFVE-EKQKLHCLNTLFSKL 265          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DHH1_CANGA (ATP-dependent RNA helicase DHH1 OS=Candida glabrata GN=DHH1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.582e-11
Identity = 44/110 (40.00%), Postives = 59/110 (53.64%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV D+  RK        L V+DE+D+MLSR FK  I  V  +LP   Q +L SAT P  + E   K +  P +I +  +ELTL+GI Q++  VE E  K   L  L+  L
Sbjct:  159 RVLDLASRKVADLSECSLFVMDEADKMLSRDFKTIIEQVLTFLPKAHQSLLFSATFPLTVKEFMVKHLHKPYEINL-MEELTLKGITQYYAFVE-ERQKLHCLNTLFSKL 266          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: SUB2_DEBHA (ATP-dependent RNA helicase SUB2 OS=Debaryomyces hansenii GN=SUB2 PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.373e-11
Identity = 39/112 (34.82%), Postives = 68/112 (60.71%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            R+  ++  K++R   IK  V+DE D++L     +  + D++R  P   QV++ SATL  EI  +  KFM +P++I V  + +LTL G++Q+++ ++ +E K   L DL D+L
Sbjct:  183 RLHALVTEKSIRLNNIKSFVIDECDKVLEAVDMRRDVQDIFRNTPHQKQVMMFSATLSQEIRPVCKKFMQNPLEIYVDDEAKLTLHGLQQYYIKLDEKE-KNRKLSDLLDSL 293          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: SUB2_AJECN (ATP-dependent RNA helicase SUB2 OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=SUB2 PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.373e-11
Identity = 40/112 (35.71%), Postives = 67/112 (59.82%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            R+  +++ K L  R IK  VLDE D+ML +   +  + +++R  P D QV++ SATL  E+  +  KFM +P+++ V  D +LTL G+ Q+++ +   E K   L +L D+L
Sbjct:  191 RLNALVRDKKLSLRNIKAFVLDECDKMLDQIDMRRDVQEIFRATPADKQVMMFSATLSQEVRPICKKFMRNPLEVYVDDDTKLTLHGLLQYYIKLGESE-KNRKLNELLDSL 301          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: SUB2_PICGU (ATP-dependent RNA helicase SUB2 OS=Pichia guilliermondii GN=SUB2 PE=3 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 4.405e-11
Identity = 38/112 (33.93%), Postives = 68/112 (60.71%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            R+  +++ K +R   +K  V+DE D++L     +  + D++R  P   QV++ SATL  EI  +  KFM +P++I V  + +LTL G++Q+++ ++ +E K   L DL D+L
Sbjct:  180 RLHALVEEKAIRLNNVKSFVIDECDKVLEAIDMRRDVQDIFRNTPHQKQVMMFSATLSQEIRPVCKKFMQNPLEIYVDDEAKLTLHGLQQYYLKLDEKE-KNRKLADLLDSL 290          
The following BLAST results are available for this feature:
BLAST of CF503860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
RH8_ARATH1.977e-1133.64DEAD-box ATP-dependent RNA helicase 8 OS=Arabidops... [more]
RH20_ORYSJ1.977e-1132.73DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sa... [more]
DHH1_VANPO1.977e-1138.18ATP-dependent RNA helicase DHH1 OS=Vanderwaltozyma... [more]
DHH1_KLULA1.977e-1138.18ATP-dependent RNA helicase DHH1 OS=Kluyveromyces l... [more]
DEAD_HAEIN1.977e-1142.86Cold-shock DEAD box protein A homolog OS=Haemophil... [more]
DHH1_DEBHA2.582e-1139.09ATP-dependent RNA helicase DHH1 OS=Debaryomyces ha... [more]
DHH1_CANGA2.582e-1140.00ATP-dependent RNA helicase DHH1 OS=Candida glabrat... [more]
SUB2_DEBHA3.373e-1134.82ATP-dependent RNA helicase SUB2 OS=Debaryomyces ha... [more]
SUB2_AJECN3.373e-1135.71ATP-dependent RNA helicase SUB2 OS=Ajellomyces cap... [more]
SUB2_PICGU4.405e-1133.93ATP-dependent RNA helicase SUB2 OS=Pichia guillier... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-347 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503860 ID=CF503860; Name=CF503860; organism=Citrus sinensis; type=EST; length=333bp
GTAGAGTCTGTGATATGATTAAGAGGAAAACTTTGCGTACTAGAGCTATT
AAATTATTGGTGCTTGATGAGTCTGATGAGATGCTGAGCAGAGGGTTCAA
GGATCAAATTTATGATGTGTACCGTTATCTTCCACCGGATCTTCAGGTTG
TTTTGATATCTGCCACCCTTCCTCACGAAATATTGGAGATGACGACCAAA
TTCATGACAGATCCTGTAAAGATTCTTGTGAAGCGTGATGAGTTGACTTT
GGAGGGAATCAAGCAATTTTTTGTTGCAGTGGAAAGAGAGGAGTGGAAGT
TTGATACACTCTGTGATCTTTATGATACCCTTA
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