CF503860
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: SUB2_ASPFU (ATP-dependent RNA helicase sub2 OS=Aspergillus fumigatus GN=sub2 PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 4.405e-11 Identity = 41/119 (34.45%), Postives = 68/119 (57.14%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKD--------QIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 R+ +++ K L R +K VLDE D+ML + K + +++R P D QV++ SATL EI + KFM +P+++ V D +LTL G++Q+++ + E K L +L D+L Sbjct: 190 RLNALVREKKLSLRNVKAFVLDECDKMLDQIGKQAQIAHMRRDVQEIFRATPADKQVMMFSATLSQEIRPICKKFMRNPLEVYVDDDTKLTLHGLQQYYIKLSESE-KNRKLNELLDSL 307
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: RH24_ORYSJ (DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa subsp. japonica GN=Os03g0308500 PE=2 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 4.405e-11 Identity = 36/112 (32.14%), Postives = 60/112 (53.57%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAV----EREEWKFDTLCDLYD 326 R+ D++K K L+ LVLDE+D M GF+ QI + + PD Q +L SAT+P+++ + + +TDP+++ V + E IKQ + E+ W + L + D Sbjct: 352 RLIDLLKMKALKMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPYKVERLAREILTDPIRVTVGQVGSANEDIKQVVNVLPSDAEKMPWLLEKLPGMID 463
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: RH20_ARATH (DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis thaliana GN=RH20 PE=1 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 4.405e-11 Identity = 35/110 (31.82%), Postives = 59/110 (53.64%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 R+ DM++ R + LVLDE+D ML GF QI + ++ PD Q + SAT P E+ +++ KF+ +P K+++ +L + V V E K++ L L + + Sbjct: 232 RLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSATWPKEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVKLLEDI 341
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: PRP5_YEAST (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Saccharomyces cerevisiae GN=PRP5 PE=1 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 4.405e-11 Identity = 33/98 (33.67%), Postives = 52/98 (53.06%), Query Frame = 3 Query: 27 KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL 320 K L T+ I +V+DE+D + GF+ QI + + + PD Q VL SAT P+++ + + P+ I + + E +KQ F E+ KFD L L Sbjct: 402 KLLSTKRITFVVMDEADRLFDLGFEPQITQIMKTVRPDKQCVLFSATFPNKLRSFAVRVLHSPISITINSKGMVNENVKQKFRICHSEDEKFDNLVQL 499
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: PRP5_YEAS7 (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Saccharomyces cerevisiae (strain YJM789) GN=PRP5 PE=3 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 4.405e-11 Identity = 33/98 (33.67%), Postives = 52/98 (53.06%), Query Frame = 3 Query: 27 KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL 320 K L T+ I +V+DE+D + GF+ QI + + + PD Q VL SAT P+++ + + P+ I + + E +KQ F E+ KFD L L Sbjct: 402 KLLSTKRITFVVMDEADRLFDLGFEPQITQIMKTVRPDKQCVLFSATFPNKLRSFAVRVLHSPISITINSKGMVNENVKQKFRICHSEDEKFDNLVQL 499
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DDX19_DROME (DEAD-box helicase Dbp80 OS=Drosophila melanogaster GN=Dbp80 PE=1 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 4.405e-11 Identity = 34/103 (33.01%), Postives = 61/103 (59.22%), Query Frame = 3 Query: 18 IKRKTLRTRAIKLLVLDESDEMLS-RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 323 IK + + I + VLDE+D M++ +G DQ +++ L P Q++ SAT E+++ + DP I + R+E +LE IKQ++V + EE K++ + ++Y Sbjct: 207 IKFRLFDMKKISVFVLDEADVMIATQGHHDQCIRIHKMLNPHCQMLFFSATYGKEVMDFARLIVADPTIIRLMREEESLENIKQYYVKCKNEEGKYNAIQNIY 309
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: SUB2_PHANO (ATP-dependent RNA helicase SUB2 OS=Phaeosphaeria nodorum GN=SUB2 PE=3 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 7.513e-11 Identity = 41/112 (36.61%), Postives = 67/112 (59.82%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 R+ +++ + LR +K VLDE D+ML + ++ + ++R P QV++ SATL EI + KFM +P++I V + +LTL G++QF+V ++ E K L DL D L Sbjct: 186 RINALVRDRHLRLANLKHFVLDECDKMLDQPDMRNDVQAIFRATPAHKQVMMFSATLSKEIRAVCKKFMQNPLEIYVDDEKKLTLHGLQQFYVKLDERE-KNRKLNDLLDNL 296
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: H669_METJA (Probable ATP-dependent RNA helicase MJ0669 OS=Methanocaldococcus jannaschii GN=MJ0669 PE=1 SV=1) HSP 1 Score: 65.855 bits (159), Expect = 7.513e-11 Identity = 39/106 (36.79%), Postives = 58/106 (54.72%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL 320 R+ D I R TL + +K +LDE+DEML+ GF + + D +++L SAT+P EIL + K+M D I K + I+Q +V V E +F+ LC L Sbjct: 133 RILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKIN----ANIEQSYVEVNENE-RFEALCRL 233 The following BLAST results are available for this feature:
BLAST of CF503860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 238
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF503860 ID=CF503860; Name=CF503860; organism=Citrus sinensis; type=EST; length=333bpback to top |