CF503860

Overview
NameCF503860
Unique NameCF503860
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length333
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: SUB2_ASPFU (ATP-dependent RNA helicase sub2 OS=Aspergillus fumigatus GN=sub2 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.405e-11
Identity = 41/119 (34.45%), Postives = 68/119 (57.14%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKD--------QIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            R+  +++ K L  R +K  VLDE D+ML +  K          + +++R  P D QV++ SATL  EI  +  KFM +P+++ V  D +LTL G++Q+++ +   E K   L +L D+L
Sbjct:  190 RLNALVREKKLSLRNVKAFVLDECDKMLDQIGKQAQIAHMRRDVQEIFRATPADKQVMMFSATLSQEIRPICKKFMRNPLEVYVDDDTKLTLHGLQQYYIKLSESE-KNRKLNELLDSL 307          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: RH24_ORYSJ (DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa subsp. japonica GN=Os03g0308500 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.405e-11
Identity = 36/112 (32.14%), Postives = 60/112 (53.57%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAV----EREEWKFDTLCDLYD 326
            R+ D++K K L+      LVLDE+D M   GF+ QI  +   + PD Q +L SAT+P+++  +  + +TDP+++ V +     E IKQ    +    E+  W  + L  + D
Sbjct:  352 RLIDLLKMKALKMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPYKVERLAREILTDPIRVTVGQVGSANEDIKQVVNVLPSDAEKMPWLLEKLPGMID 463          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: RH20_ARATH (DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis thaliana GN=RH20 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.405e-11
Identity = 35/110 (31.82%), Postives = 59/110 (53.64%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            R+ DM++      R +  LVLDE+D ML  GF  QI  +  ++ PD Q +  SAT P E+ +++ KF+ +P K+++   +L      +  V V  E  K++ L  L + +
Sbjct:  232 RLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSATWPKEVEQLSKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVKLLEDI 341          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: PRP5_YEAST (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Saccharomyces cerevisiae GN=PRP5 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.405e-11
Identity = 33/98 (33.67%), Postives = 52/98 (53.06%), Query Frame = 3
Query:   27 KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL 320
            K L T+ I  +V+DE+D +   GF+ QI  + + + PD Q VL SAT P+++     + +  P+ I +    +  E +KQ F     E+ KFD L  L
Sbjct:  402 KLLSTKRITFVVMDEADRLFDLGFEPQITQIMKTVRPDKQCVLFSATFPNKLRSFAVRVLHSPISITINSKGMVNENVKQKFRICHSEDEKFDNLVQL 499          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: PRP5_YEAS7 (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Saccharomyces cerevisiae (strain YJM789) GN=PRP5 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.405e-11
Identity = 33/98 (33.67%), Postives = 52/98 (53.06%), Query Frame = 3
Query:   27 KTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL 320
            K L T+ I  +V+DE+D +   GF+ QI  + + + PD Q VL SAT P+++     + +  P+ I +    +  E +KQ F     E+ KFD L  L
Sbjct:  402 KLLSTKRITFVVMDEADRLFDLGFEPQITQIMKTVRPDKQCVLFSATFPNKLRSFAVRVLHSPISITINSKGMVNENVKQKFRICHSEDEKFDNLVQL 499          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: DDX19_DROME (DEAD-box helicase Dbp80 OS=Drosophila melanogaster GN=Dbp80 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.405e-11
Identity = 34/103 (33.01%), Postives = 61/103 (59.22%), Query Frame = 3
Query:   18 IKRKTLRTRAIKLLVLDESDEMLS-RGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY 323
            IK +    + I + VLDE+D M++ +G  DQ   +++ L P  Q++  SAT   E+++     + DP  I + R+E +LE IKQ++V  + EE K++ + ++Y
Sbjct:  207 IKFRLFDMKKISVFVLDEADVMIATQGHHDQCIRIHKMLNPHCQMLFFSATYGKEVMDFARLIVADPTIIRLMREEESLENIKQYYVKCKNEEGKYNAIQNIY 309          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: SUB2_PHANO (ATP-dependent RNA helicase SUB2 OS=Phaeosphaeria nodorum GN=SUB2 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.513e-11
Identity = 41/112 (36.61%), Postives = 67/112 (59.82%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSR-GFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            R+  +++ + LR   +K  VLDE D+ML +   ++ +  ++R  P   QV++ SATL  EI  +  KFM +P++I V  + +LTL G++QF+V ++  E K   L DL D L
Sbjct:  186 RINALVRDRHLRLANLKHFVLDECDKMLDQPDMRNDVQAIFRATPAHKQVMMFSATLSKEIRAVCKKFMQNPLEIYVDDEKKLTLHGLQQFYVKLDERE-KNRKLNDLLDNL 296          
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: H669_METJA (Probable ATP-dependent RNA helicase MJ0669 OS=Methanocaldococcus jannaschii GN=MJ0669 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.513e-11
Identity = 39/106 (36.79%), Postives = 58/106 (54.72%), Query Frame = 3
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDL 320
            R+ D I R TL  + +K  +LDE+DEML+ GF   +  +      D +++L SAT+P EIL +  K+M D   I  K +      I+Q +V V   E +F+ LC L
Sbjct:  133 RILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKIN----ANIEQSYVEVNENE-RFEALCRL 233          
The following BLAST results are available for this feature:
BLAST of CF503860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
SUB2_ASPFU4.405e-1134.45ATP-dependent RNA helicase sub2 OS=Aspergillus fum... [more]
RH24_ORYSJ4.405e-1132.14DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sa... [more]
RH20_ARATH4.405e-1131.82DEAD-box ATP-dependent RNA helicase 20 OS=Arabidop... [more]
PRP5_YEAST4.405e-1133.67Pre-mRNA-processing ATP-dependent RNA helicase PRP... [more]
PRP5_YEAS74.405e-1133.67Pre-mRNA-processing ATP-dependent RNA helicase PRP... [more]
DDX19_DROME4.405e-1133.01DEAD-box helicase Dbp80 OS=Drosophila melanogaster... [more]
SUB2_PHANO7.513e-1136.61ATP-dependent RNA helicase SUB2 OS=Phaeosphaeria n... [more]
H669_METJA7.513e-1136.79Probable ATP-dependent RNA helicase MJ0669 OS=Meth... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-347 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503860 ID=CF503860; Name=CF503860; organism=Citrus sinensis; type=EST; length=333bp
GTAGAGTCTGTGATATGATTAAGAGGAAAACTTTGCGTACTAGAGCTATT
AAATTATTGGTGCTTGATGAGTCTGATGAGATGCTGAGCAGAGGGTTCAA
GGATCAAATTTATGATGTGTACCGTTATCTTCCACCGGATCTTCAGGTTG
TTTTGATATCTGCCACCCTTCCTCACGAAATATTGGAGATGACGACCAAA
TTCATGACAGATCCTGTAAAGATTCTTGTGAAGCGTGATGAGTTGACTTT
GGAGGGAATCAAGCAATTTTTTGTTGCAGTGGAAAGAGAGGAGTGGAAGT
TTGATACACTCTGTGATCTTTATGATACCCTTA
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