CF503860
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: FAL1_PICST (ATP-dependent RNA helicase FAL1 OS=Pichia stipitis GN=FAL1 PE=3 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 1.834e-41 Identity = 76/110 (69.09%), Postives = 96/110 (87.27%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 RV DM+KR+ L TR IK+L+LDE+DE+ ++GFK+QIY+VY+YLPP +QVV++SATL E+LEMT KF TDPVKILVKRD++TLEGIKQ+ V E+E+WKFDTLCDLYD L Sbjct: 154 RVVDMVKRQQLSTRNIKMLILDEADELFTKGFKEQIYEVYKYLPPSVQVVVVSATLSREVLEMTNKFTTDPVKILVKRDQITLEGIKQYHVQCEKEDWKFDTLCDLYDNL 263
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: FAL1_DEBHA (ATP-dependent RNA helicase FAL1 OS=Debaryomyces hansenii GN=FAL1 PE=3 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 3.128e-41 Identity = 74/110 (67.27%), Postives = 98/110 (89.09%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 RV DMIKR+ L TR IK+++LDE+DE++++GFK+QIY++YRYLPP +QVV++SATL E+LE+T KF TDPVKILVKRD++TLEGIKQ+ + E+E+WKFDTLCDLYD+L Sbjct: 154 RVVDMIKRRNLATRNIKMMILDEADELMTKGFKEQIYEIYRYLPPGVQVVVVSATLSREVLEVTGKFTTDPVKILVKRDDITLEGIKQYHIQCEKEDWKFDTLCDLYDSL 263
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: FAL1_LODEL (ATP-dependent RNA helicase FAL1 OS=Lodderomyces elongisporus GN=FAL1 PE=3 SV=1) HSP 1 Score: 163.696 bits (413), Expect = 2.648e-40 Identity = 72/110 (65.45%), Postives = 97/110 (88.18%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 RV D+IKR+ L TR IK+L+LDE+DE+ ++GFK+QIY++Y++LPP +QVV++SATL HE+LEMT KF TDPVKILVKR+E++L GIKQ+++ E+E+WKFDTLCDLYD L Sbjct: 154 RVLDVIKRRNLSTRHIKMLILDEADELFTKGFKEQIYEIYKHLPPGVQVVVVSATLTHEVLEMTGKFTTDPVKILVKREEVSLSGIKQYYIQCEKEDWKFDTLCDLYDNL 263
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A_USTMA (ATP-dependent RNA helicase eIF4A OS=Ustilago maydis GN=TIF1 PE=3 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 1.006e-39 Identity = 74/110 (67.27%), Postives = 94/110 (85.45%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 RV DMI R+ +T +K+ LDE+DEMLSRGFKDQ+Y+V++ LP D Q VL+SAT+P E+LE+T KFM DP++ILVKRDELTLEGIKQF+VAVE+E+WK DTLCDLY+T+ Sbjct: 166 RVYDMINRRAFKTDQLKMFCLDEADEMLSRGFKDQMYEVFQLLPQDTQCVLLSATMPQEVLEVTKKFMRDPIRILVKRDELTLEGIKQFYVAVEKEDWKLDTLCDLYETV 275
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A1_ARATH (Eukaryotic initiation factor 4A-1 OS=Arabidopsis thaliana GN=TIF4A-1 PE=1 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 1.006e-39 Identity = 77/110 (70.00%), Postives = 95/110 (86.36%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 RV DM+KR++LR IK+ VLDE+DEMLSRGFKDQIYD+++ LPP +QV + SAT+P E LE+T KFM+ PV+ILVKRDELTLEGIKQF+V VE+EEWK +TLCDLY+TL Sbjct: 167 RVFDMLKRQSLRADNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEEWKLETLCDLYETL 276
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A_DROME (Eukaryotic initiation factor 4A OS=Drosophila melanogaster GN=eIF-4a PE=2 SV=3) HSP 1 Score: 160.614 bits (405), Expect = 2.241e-39 Identity = 77/110 (70.00%), Postives = 94/110 (85.45%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 RV DMI RK LRT+ IKL VLDE+DEMLSRGFKDQI DV++ LPPD+QV+L+SAT+P ++LE++ FM DPV ILVK++ELTLEGIKQF+V V++E WK TLCDLYDTL Sbjct: 158 RVYDMINRKVLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDVQVILLSATMPPDVLEVSRCFMRDPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDLYDTL 267
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A3_ORYSJ (Eukaryotic initiation factor 4A-3 OS=Oryza sativa subsp. japonica GN=Os02g0146600 PE=2 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 2.927e-39 Identity = 76/110 (69.09%), Postives = 94/110 (85.45%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 RV DM++R++LR IK+ VLDE+DEMLSRGFKDQIYD+++ LPP +QV + SAT+P E LE+T KFM PV+ILVKRDELTLEGIKQF+V VE+E+WK DTLCDLY+TL Sbjct: 169 RVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEKEDWKLDTLCDLYETL 278
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A_MAGGR (ATP-dependent RNA helicase eIF4A OS=Magnaporthe grisea GN=TIF1 PE=3 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 3.823e-39 Identity = 74/110 (67.27%), Postives = 96/110 (87.27%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 RV DMI+R+ L+T +K+ VLDE+DEMLSRGF +QIYD+++ LP QVVL+SAT+P ++LE+TTKFM DPV+ILVK+DELTLEGIKQF++AVE+EEWK DTL DLY+T+ Sbjct: 151 RVHDMIQRRFLKTDGMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVTTKFMRDPVRILVKKDELTLEGIKQFYIAVEKEEWKLDTLSDLYETV 260
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A2_ARATH (Eukaryotic initiation factor 4A-2 OS=Arabidopsis thaliana GN=TIF4A-2 PE=1 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 3.823e-39 Identity = 75/110 (68.18%), Postives = 95/110 (86.36%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 RV DM++R++LR IK+ VLDE+DEMLSRGFKDQIYD+++ LPP +QV + SAT+P E LE+T KFM+ PV+ILVKRDELTLEGIKQF+V VE+E+WK +TLCDLY+TL Sbjct: 167 RVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFYVNVEKEDWKLETLCDLYETL 276
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A_ASPCL (ATP-dependent RNA helicase eIF4A OS=Aspergillus clavatus GN=tif1 PE=3 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 4.993e-39 Identity = 74/110 (67.27%), Postives = 95/110 (86.36%), Query Frame = 3 Query: 3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332 RV DMI+R+ LRT +KL +LDE+DEMLSRGF +QIYD+++ LP QVVL+SAT+P ++LE+TTKFM DPV+ILVK+ ELTLEGIKQF++AVE+EEWK DTL DLY+T+ Sbjct: 153 RVQDMIQRRVLRTDQMKLFILDEADEMLSRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKLDTLSDLYETV 262 The following BLAST results are available for this feature:
BLAST of CF503860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 238
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Sequences
The
following sequences are available for this feature:
EST sequence >CF503860 ID=CF503860; Name=CF503860; organism=Citrus sinensis; type=EST; length=333bpback to top |