CF503860

Overview
NameCF503860
Unique NameCF503860
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length333
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4206 contig Csv1_Contig4206:531..863. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A_DICDI (Eukaryotic initiation factor 4A OS=Dictyostelium discoideum GN=tifA PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 6.521e-39
Identity = 75/110 (68.18%), Postives = 94/110 (85.45%), Query Frame = 3 
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DMI RK+L TR IK+++LDE+DEMLS GF+ QI DVYRYLP   Q+VL+SATL  +++ MT KFMT PV+IL+KRDELTL+GIKQFFV+VE+E+WKF TLCD+YD+L
Sbjct:  160 RVLDMITRKSLPTRHIKMMILDEADEMLSLGFQQQINDVYRYLPNGTQIVLVSATLTQDVVSMTEKFMTKPVRILLKRDELTLDGIKQFFVSVEKEDWKFGTLCDIYDSL 269
[Close]
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A6_TOBAC (Eukaryotic initiation factor 4A-6 (Fragment) OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 6.521e-39
Identity = 75/110 (68.18%), Postives = 94/110 (85.45%), Query Frame = 3 
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DM++R++LR   IK+ VLDE+DEMLSRGFKDQIYD+++ LPP +QV + SAT+P E LE+T KFM  PV+ILVKRDELTLEGIKQF+V V++EEWK +TLCDLY+TL
Sbjct:    9 RVFDMLRRQSLRPDNIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGIFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETL 118
[Close]
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A_PHANO (ATP-dependent RNA helicase eIF4A OS=Phaeosphaeria nodorum GN=TIF1 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.517e-39
Identity = 73/110 (66.36%), Postives = 96/110 (87.27%), Query Frame = 3 
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DMI+R+ L+T  +K+ VLDE+DEMLSRGF +QIYD+++ LP   QVVL+SAT+P ++LE+TTKFM DPV+ILVK+DELTLEGIKQF++AVE+E+WK DTL DLY+T+
Sbjct:  151 RVHDMIQRRVLKTDHMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVTTKFMRDPVRILVKKDELTLEGIKQFYIAVEKEDWKLDTLSDLYETV 260
[Close]
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A_NEUCR (ATP-dependent RNA helicase eIF4A OS=Neurospora crassa GN=tif-1 PE=3 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 8.517e-39
Identity = 73/110 (66.36%), Postives = 97/110 (88.18%), Query Frame = 3 
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DMI+R+ L+T ++K+ VLDE+DEMLSRGF +QIYD+++ LP   QVVL+SAT+P ++LE+TTKFM +PV+ILVK+DELTLEGIKQF++AVE+EEWK DTL DLY+T+
Sbjct:  152 RVHDMIQRRFLKTDSMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVTTKFMREPVRILVKKDELTLEGIKQFYIAVEKEEWKLDTLSDLYETV 261
[Close]
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A_NEOFI (ATP-dependent RNA helicase eIF4A OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=tif1 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.517e-39
Identity = 73/110 (66.36%), Postives = 95/110 (86.36%), Query Frame = 3 
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DMI+R+ LRT  +K+ +LDE+DEMLSRGF +QIYD+++ LP   QVVL+SAT+P ++LE+TTKFM DPV+ILVK+ ELTLEGIKQF++AVE+EEWK DTL DLY+T+
Sbjct:  153 RVQDMIQRRVLRTDNLKMFILDEADEMLSRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKLDTLSDLYETV 262
[Close]
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A_CHAGB (ATP-dependent RNA helicase eIF4A OS=Chaetomium globosum GN=TIF1 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.517e-39
Identity = 73/110 (66.36%), Postives = 96/110 (87.27%), Query Frame = 3 
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DMI+R+ L+T  +K+ VLDE+DEMLSRGF +QIYD+++ LP   QVVL+SAT+P ++LE+TTKFM DPV+ILVK+DELTLEGIKQF++AVE+E+WK DTL DLY+T+
Sbjct:  152 RVHDMIQRRILKTDQMKMFVLDEADEMLSRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVTTKFMRDPVRILVKKDELTLEGIKQFYIAVEKEDWKLDTLSDLYETV 261
[Close]
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A_ASPFU (ATP-dependent RNA helicase eIF4A OS=Aspergillus fumigatus GN=tif1 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.517e-39
Identity = 73/110 (66.36%), Postives = 95/110 (86.36%), Query Frame = 3 
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DMI+R+ LRT  +K+ +LDE+DEMLSRGF +QIYD+++ LP   QVVL+SAT+P ++LE+TTKFM DPV+ILVK+ ELTLEGIKQF++AVE+EEWK DTL DLY+T+
Sbjct:  153 RVQDMIQRRVLRTDNLKMFILDEADEMLSRGFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVTTKFMRDPVRILVKKQELTLEGIKQFYIAVEKEEWKLDTLSDLYETV 262
[Close]
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A9_TOBAC (Eukaryotic initiation factor 4A-9 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.517e-39
Identity = 75/110 (68.18%), Postives = 94/110 (85.45%), Query Frame = 3 
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DM++R++LR   IK+ VLDE+DEMLSRGFKDQIYD+++ LPP +QV + SAT+P E LE+T KFM  PV+ILVKRDELTLEGIKQF+V V++EEWK +TLCDLY+TL
Sbjct:  168 RVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETL 277
[Close]
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF4A2_NICPL (Eukaryotic initiation factor 4A-2 OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.517e-39
Identity = 75/110 (68.18%), Postives = 94/110 (85.45%), Query Frame = 3 
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DM++R++LR   IK+ VLDE+DEMLSRGFKDQIYD+++ LPP +QV + SAT+P E LE+T KFM  PV+ILVKRDELTLEGIKQF+V V++EEWK +TLCDLY+TL
Sbjct:  168 RVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETL 277
[Close]
BLAST of CF503860 vs. ExPASy Swiss-Prot
Match: IF415_TOBAC (Eukaryotic initiation factor 4A-15 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.517e-39
Identity = 75/110 (68.18%), Postives = 94/110 (85.45%), Query Frame = 3 
Query:    3 RVCDMIKRKTLRTRAIKLLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVVLISATLPHEILEMTTKFMTDPVKILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 332
            RV DM++R++LR   IK+ VLDE+DEMLSRGFKDQIYD+++ LPP +QV + SAT+P E LE+T KFM  PV+ILVKRDELTLEGIKQF+V V++EEWK +TLCDLY+TL
Sbjct:  168 RVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETL 277
The following BLAST results are available for this feature:
BLAST of CF503860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
IF4A_DICDI6.521e-3968.18Eukaryotic initiation factor 4A OS=Dictyostelium d... [more]
IF4A6_TOBAC6.521e-3968.18Eukaryotic initiation factor 4A-6 (Fragment) OS=Ni... [more]
IF4A_PHANO8.517e-3966.36ATP-dependent RNA helicase eIF4A OS=Phaeosphaeria ... [more]
IF4A_NEUCR8.517e-3966.36ATP-dependent RNA helicase eIF4A OS=Neurospora cra... [more]
IF4A_NEOFI8.517e-3966.36ATP-dependent RNA helicase eIF4A OS=Neosartorya fi... [more]
IF4A_CHAGB8.517e-3966.36ATP-dependent RNA helicase eIF4A OS=Chaetomium glo... [more]
IF4A_ASPFU8.517e-3966.36ATP-dependent RNA helicase eIF4A OS=Aspergillus fu... [more]
IF4A9_TOBAC8.517e-3968.18Eukaryotic initiation factor 4A-9 OS=Nicotiana tab... [more]
IF4A2_NICPL8.517e-3968.18Eukaryotic initiation factor 4A-2 OS=Nicotiana plu... [more]
IF415_TOBAC8.517e-3968.18Eukaryotic initiation factor 4A-15 OS=Nicotiana ta... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-347 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503860 ID=CF503860; Name=CF503860; organism=Citrus sinensis; type=EST; length=333bp
GTAGAGTCTGTGATATGATTAAGAGGAAAACTTTGCGTACTAGAGCTATT
AAATTATTGGTGCTTGATGAGTCTGATGAGATGCTGAGCAGAGGGTTCAA
GGATCAAATTTATGATGTGTACCGTTATCTTCCACCGGATCTTCAGGTTG
TTTTGATATCTGCCACCCTTCCTCACGAAATATTGGAGATGACGACCAAA
TTCATGACAGATCCTGTAAAGATTCTTGTGAAGCGTGATGAGTTGACTTT
GGAGGGAATCAAGCAATTTTTTGTTGCAGTGGAAAGAGAGGAGTGGAAGT
TTGATACACTCTGTGATCTTTATGATACCCTTA
back to top